Wall clock time and date at job start Fri Apr 10 2020 18:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34236 * 116.99575 * 2 1 4 4 O 1.20822 * 120.00233 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99448 * 179.97438 * 3 2 1 6 6 N 1.46496 * 109.46745 * 179.97438 * 5 3 2 7 7 C 1.36832 * 120.00362 * 274.56734 * 6 5 3 8 8 H 1.08002 * 120.00458 * 127.26070 * 7 6 5 9 9 C 1.39053 * 119.99896 * 307.26724 * 7 6 5 10 10 N 1.31357 * 119.99982 * 4.44008 * 9 7 6 11 11 Si 1.86808 * 119.99954 * 184.44308 * 9 7 6 12 12 H 1.48500 * 109.47069 * 89.99692 * 11 9 7 13 13 H 1.48506 * 109.46883 * 210.00170 * 11 9 7 14 14 H 1.48504 * 109.47023 * 329.99698 * 11 9 7 15 15 C 1.34778 * 119.99922 * 94.57089 * 6 5 3 16 16 O 1.21681 * 120.00237 * 3.51823 * 15 6 5 17 17 C 1.47029 * 120.00189 * 183.51751 * 15 6 5 18 18 C 1.38521 * 126.89695 * 173.32422 * 17 15 6 19 19 C 1.39642 * 105.34493 * 180.10432 * 18 17 15 20 20 C 1.50705 * 126.05648 * 179.85418 * 19 18 17 21 21 C 1.52993 * 109.47278 * 74.71292 * 20 19 18 22 22 C 1.53001 * 109.46738 * 314.71206 * 20 19 18 23 23 C 1.52999 * 109.46882 * 194.71566 * 20 19 18 24 24 N 1.30877 * 107.88543 * 359.58766 * 19 18 17 25 25 N 1.28438 * 110.94560 * 0.26578 * 24 19 18 26 26 H 0.97007 * 125.19094 * 179.97438 * 25 24 19 27 27 H 1.08999 * 109.47266 * 300.00269 * 1 2 3 28 28 H 1.09001 * 109.47021 * 59.99995 * 1 2 3 29 29 H 1.08996 * 109.46982 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47269 * 59.99757 * 5 3 2 31 31 H 1.09005 * 109.47218 * 299.99447 * 5 3 2 32 32 H 0.97003 * 120.00073 * 180.02562 * 10 9 7 33 33 H 1.08000 * 127.32737 * 359.95240 * 18 17 15 34 34 H 1.09002 * 109.47497 * 300.00173 * 21 20 19 35 35 H 1.09000 * 109.47092 * 60.00389 * 21 20 19 36 36 H 1.09000 * 109.47005 * 179.97438 * 21 20 19 37 37 H 1.09000 * 109.46807 * 180.02562 * 22 20 19 38 38 H 1.08994 * 109.47386 * 300.00042 * 22 20 19 39 39 H 1.09002 * 109.46915 * 60.00514 * 22 20 19 40 40 H 1.09000 * 109.47350 * 299.99526 * 23 20 19 41 41 H 1.09003 * 109.47398 * 60.00010 * 23 20 19 42 42 H 1.09000 * 109.47084 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6798 -0.0002 7 6 4.0856 3.3619 -1.1817 8 1 3.5756 4.3056 -1.3073 9 6 4.8479 2.8401 -2.2211 10 7 5.3965 1.6526 -2.1011 11 14 5.0918 3.8278 -3.7878 12 1 6.3041 4.6751 -3.6551 13 1 5.2587 2.9011 -4.9362 14 1 3.9064 4.6923 -4.0175 15 6 4.2614 3.3004 1.1631 16 8 4.2312 2.6773 2.2078 17 6 4.6030 4.7304 1.1698 18 6 4.7879 5.5361 2.2813 19 6 5.0912 6.8014 1.7743 20 6 5.3768 8.0377 2.5873 21 6 6.7777 7.9369 3.1938 22 6 4.3431 8.1606 3.7087 23 6 5.2992 9.2708 1.6849 24 7 5.0891 6.7220 0.4679 25 7 4.8086 5.5299 0.0808 26 1 4.7511 5.2412 -0.8435 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.9565 0.7806 -0.8891 31 1 3.9557 0.7811 0.8909 32 1 5.9286 1.2887 -2.8260 33 1 4.7110 5.2477 3.3192 34 1 6.8330 7.0585 3.8368 35 1 7.5141 7.8494 2.3949 36 1 6.9844 8.8314 3.7815 37 1 4.5494 9.0550 4.2965 38 1 3.3451 8.2324 3.2766 39 1 4.3984 7.2821 4.3516 40 1 6.0355 9.1833 0.8860 41 1 4.3010 9.3426 1.2528 42 1 5.5053 10.1650 2.2730 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120648309.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:14 Heat of formation + Delta-G solvation = -65.123629 kcal Electronic energy + Delta-G solvation = -26448.882464 eV Core-core repulsion = 22623.368517 eV Total energy + Delta-G solvation = -3825.513947 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.41704 -41.55995 -40.16809 -37.74858 -37.57452 -36.83741 -33.82898 -32.01511 -31.81840 -30.06821 -28.14120 -28.00794 -27.93680 -27.04600 -23.91367 -23.48261 -22.05530 -21.52973 -20.45978 -19.53871 -18.74308 -18.11926 -17.50486 -17.20367 -17.10687 -16.68625 -16.44801 -16.21295 -15.56312 -15.32139 -14.84991 -14.75317 -14.56243 -14.44582 -14.29846 -14.20732 -13.57325 -13.33246 -13.06734 -13.01505 -12.94222 -12.87479 -12.64008 -12.45630 -12.24384 -12.14465 -11.90936 -11.81586 -11.80546 -11.61807 -11.38861 -11.25226 -10.88990 -10.03553 -9.93571 -9.64997 -8.57460 -6.62655 0.43027 1.22116 1.34129 1.36476 1.46393 1.62010 1.75047 2.09605 2.16439 2.42352 2.70442 2.86142 3.58685 3.89587 4.00254 4.04070 4.20326 4.27118 4.29999 4.34614 4.41413 4.53554 4.62997 4.66920 4.79675 4.83709 4.90107 4.94752 5.00480 5.12224 5.12465 5.14229 5.26013 5.31132 5.32162 5.54831 5.57663 5.66483 5.71389 6.02447 6.27730 6.74197 6.77930 7.09614 7.29280 7.59397 8.43871 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.013365 B = 0.004984 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.483719 B = 5616.126166 C = 6951.643804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.452 3.548 4 O -0.535 6.535 5 C 0.114 3.886 6 N -0.428 5.428 7 C -0.383 4.383 8 H 0.086 0.914 9 C 0.030 3.970 10 N -0.869 5.869 11 Si 0.967 3.033 12 H -0.261 1.261 13 H -0.264 1.264 14 H -0.259 1.259 15 C 0.550 3.450 16 O -0.605 6.605 17 C -0.018 4.018 18 C -0.183 4.183 19 C 0.031 3.969 20 C 0.016 3.984 21 C -0.133 4.133 22 C -0.134 4.134 23 C -0.129 4.129 24 N -0.300 5.300 25 N -0.362 5.362 26 H 0.450 0.550 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.139 0.861 30 H 0.148 0.852 31 H 0.104 0.896 32 H 0.288 0.712 33 H 0.161 0.839 34 H 0.054 0.946 35 H 0.044 0.956 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.045 0.955 39 H 0.057 0.943 40 H 0.049 0.951 41 H 0.044 0.956 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.131 6.019 3.270 6.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.295 3.705 4 O -0.425 6.425 5 C -0.010 4.010 6 N -0.146 5.146 7 C -0.510 4.510 8 H 0.103 0.897 9 C -0.179 4.179 10 N -0.502 5.502 11 Si 0.787 3.213 12 H -0.185 1.185 13 H -0.188 1.188 14 H -0.183 1.183 15 C 0.340 3.660 16 O -0.490 6.490 17 C -0.147 4.147 18 C -0.213 4.213 19 C -0.126 4.126 20 C 0.014 3.986 21 C -0.190 4.190 22 C -0.192 4.192 23 C -0.186 4.186 24 N -0.134 5.134 25 N -0.088 5.088 26 H 0.308 0.692 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.157 0.843 30 H 0.165 0.835 31 H 0.122 0.878 32 H 0.098 0.902 33 H 0.178 0.822 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.112 6.399 2.646 7.014 hybrid contribution -0.511 -0.849 -0.752 1.244 sum -1.623 5.551 1.894 6.085 Atomic orbital electron populations 1.23526 0.75184 1.05730 1.02054 1.86514 1.24904 1.32625 1.84086 1.24991 0.93270 0.81359 0.70901 1.90562 1.67606 1.37572 1.46725 1.21235 0.85302 0.87208 1.07295 1.42871 1.57090 1.09349 1.05316 1.19435 1.32514 1.06927 0.92144 0.89676 1.26425 0.92782 0.96638 1.02054 1.69598 1.29625 1.15964 1.35002 0.85322 0.79848 0.78883 0.77201 1.18526 1.18831 1.18271 1.17777 0.78610 0.85583 0.84002 1.90634 1.58771 1.66596 1.32975 1.21611 1.10972 0.92891 0.89272 1.22015 1.08186 0.92622 0.98468 1.22349 1.04461 0.96322 0.89460 1.19062 0.97227 0.88663 0.93629 1.21839 0.93763 1.03015 1.00431 1.21855 0.97350 1.03060 0.96954 1.21721 1.01525 0.96332 0.99042 1.72968 1.20436 1.03864 1.16148 1.45273 1.48293 1.04632 1.10560 0.69179 0.92562 0.92405 0.84277 0.83500 0.87825 0.90153 0.82171 0.92689 0.93659 0.89337 0.89359 0.93551 0.92413 0.93186 0.93692 0.89882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 10.56 113.37 1.20 1.98 16 2 O -0.37 -13.60 10.57 -51.47 -0.54 -14.14 16 3 C 0.45 20.41 8.00 71.24 0.57 20.98 16 4 O -0.54 -26.96 16.10 21.98 0.35 -26.61 16 5 C 0.11 5.39 5.72 85.63 0.49 5.88 16 6 N -0.43 -21.64 1.98 -643.76 -1.28 -22.91 16 7 C -0.38 -18.67 6.53 84.11 0.55 -18.12 16 8 H 0.09 4.17 6.04 -2.91 -0.02 4.15 16 9 C 0.03 1.36 5.40 84.96 0.46 1.82 16 10 N -0.87 -41.20 11.17 21.68 0.24 -40.96 16 11 Si 0.97 35.85 29.50 68.60 2.02 37.88 16 12 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 13 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 14 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 15 C 0.55 28.50 7.62 86.55 0.66 29.16 16 16 O -0.61 -33.02 16.42 -4.29 -0.07 -33.09 16 17 C -0.02 -0.82 6.85 40.77 0.28 -0.54 16 18 C -0.18 -7.43 10.14 22.68 0.23 -7.20 16 19 C 0.03 1.13 5.64 43.04 0.24 1.37 16 20 C 0.02 0.42 0.96 -52.93 -0.05 0.37 16 21 C -0.13 -2.98 8.46 71.98 0.61 -2.37 16 22 C -0.13 -2.99 8.21 71.98 0.59 -2.40 16 23 C -0.13 -3.04 8.04 71.98 0.58 -2.46 16 24 N -0.30 -11.98 11.47 -47.50 -0.55 -12.52 16 25 N -0.36 -15.82 6.26 -48.00 -0.30 -16.12 16 26 H 0.45 19.52 5.11 -220.00 -1.12 18.39 16 27 H 0.06 1.57 8.13 -2.39 -0.02 1.55 16 28 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 29 H 0.14 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.15 6.98 5.68 -2.39 -0.01 6.97 16 31 H 0.10 4.81 7.25 -2.38 -0.02 4.79 16 32 H 0.29 12.63 8.31 -92.71 -0.77 11.86 16 33 H 0.16 6.01 7.80 -2.91 -0.02 5.99 16 34 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 35 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.06 1.31 7.60 -2.39 -0.02 1.29 16 40 H 0.05 1.28 8.08 -2.39 -0.02 1.26 16 41 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.08 1.43 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -63.31 354.19 6.21 -57.10 By element: Atomic # 1 Polarization: 42.98 SS G_CDS: -0.08 Total: 42.91 kcal Atomic # 6 Polarization: 22.06 SS G_CDS: 6.40 Total: 28.46 kcal Atomic # 7 Polarization: -90.63 SS G_CDS: -1.88 Total: -92.51 kcal Atomic # 8 Polarization: -73.58 SS G_CDS: -0.26 Total: -73.84 kcal Atomic # 14 Polarization: 35.85 SS G_CDS: 2.02 Total: 37.88 kcal Total: -63.31 6.21 -57.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120648309.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.023 kcal (2) G-P(sol) polarization free energy of solvation -63.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds