Wall clock time and date at job start Fri Apr 10 2020 18:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46497 * 109.46779 * 2 1 4 4 C 1.46505 * 119.99809 * 269.99402 * 3 2 1 5 5 C 1.50698 * 109.47136 * 270.00078 * 4 3 2 6 6 H 1.08000 * 120.00325 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00027 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99882 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00290 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46920 * 90.00173 * 9 7 5 11 11 H 1.48500 * 109.47231 * 210.00305 * 9 7 5 12 12 H 1.48501 * 109.46885 * 330.00412 * 9 7 5 13 13 C 1.34778 * 120.00016 * 90.00277 * 3 2 1 14 14 O 1.21288 * 119.99798 * 179.97438 * 13 3 2 15 15 C 1.50701 * 120.00015 * 359.97438 * 13 3 2 16 16 N 1.46505 * 109.46708 * 180.02562 * 15 13 3 17 17 C 1.34781 * 119.99511 * 180.02562 * 16 15 13 18 18 O 1.21584 * 119.99970 * 359.97438 * 17 16 15 19 19 N 1.34771 * 119.99489 * 180.02562 * 17 16 15 20 20 C 1.46505 * 119.99622 * 180.02562 * 19 17 16 21 21 C 1.50703 * 109.47064 * 179.97438 * 20 19 17 22 22 C 1.34515 * 125.79060 * 89.99944 * 21 20 19 23 23 C 1.41380 * 106.83832 * 179.97438 * 22 21 20 24 24 C 1.34506 * 106.84493 * 359.97438 * 23 22 21 25 25 O 1.34306 * 125.78568 * 269.69282 * 21 20 19 26 26 H 1.08998 * 109.46950 * 300.00164 * 1 2 3 27 27 H 1.09002 * 109.46547 * 60.00065 * 1 2 3 28 28 H 1.09002 * 109.46779 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46950 * 239.99836 * 2 1 3 30 30 H 1.09002 * 109.46547 * 119.99935 * 2 1 3 31 31 H 1.08993 * 109.46865 * 30.00402 * 4 3 2 32 32 H 1.09005 * 109.46679 * 150.00614 * 4 3 2 33 33 H 0.97001 * 120.00350 * 179.97438 * 8 7 5 34 34 H 1.08994 * 109.46995 * 60.00543 * 15 13 3 35 35 H 1.08994 * 109.46942 * 300.00312 * 15 13 3 36 36 H 0.97003 * 120.00113 * 0.02562 * 16 15 13 37 37 H 0.96996 * 120.00772 * 359.97438 * 19 17 16 38 38 H 1.09002 * 109.47068 * 299.99729 * 20 19 17 39 39 H 1.09001 * 109.47372 * 59.99816 * 20 19 17 40 40 H 1.07996 * 126.58016 * 0.03378 * 22 21 20 41 41 H 1.08006 * 126.57610 * 179.97438 * 23 22 21 42 42 H 1.08005 * 125.79499 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.6859 1.8350 -1.7037 6 1 4.3428 1.2303 -1.0961 7 6 4.1493 2.3896 -2.8779 8 7 3.3493 3.1256 -3.6181 9 14 5.9133 2.0956 -3.4174 10 1 5.9762 0.8743 -4.2600 11 1 6.3924 3.2626 -4.2007 12 1 6.7736 1.9159 -2.2204 13 6 2.2430 2.0166 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9914 1.3063 2.4723 16 7 2.3083 2.2041 3.5858 17 6 2.1585 1.7805 4.8565 18 8 1.7601 0.6535 5.0787 19 7 2.4496 2.6066 5.8808 20 6 2.2874 2.1460 7.2621 21 6 2.6774 3.2514 8.2093 22 6 1.8521 4.1914 8.7039 23 6 2.6311 5.0190 9.5447 24 6 3.8857 4.5351 9.5141 25 8 3.9069 3.4616 8.7072 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.5818 1.6876 -2.0284 32 1 2.0956 3.1410 -1.1384 33 1 3.6753 3.5160 -4.4441 34 1 2.6213 0.4187 2.5302 35 1 0.9434 1.0125 2.5299 36 1 2.6258 3.1034 3.4085 37 1 2.7671 3.5059 5.7036 38 1 1.2467 1.8706 7.4334 39 1 2.9256 1.2792 7.4334 40 1 0.7967 4.2935 8.4989 41 1 2.2851 5.8756 10.1043 42 1 4.7317 4.9388 10.0504 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121542903.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:17 Heat of formation + Delta-G solvation = -45.414246 kcal Electronic energy + Delta-G solvation = -24680.636408 eV Core-core repulsion = 20855.977124 eV Total energy + Delta-G solvation = -3824.659284 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.93495 -40.13425 -38.98717 -35.58058 -35.24543 -34.22614 -33.30861 -32.81501 -30.78255 -30.14126 -28.47566 -26.65354 -25.43012 -23.06695 -22.54171 -22.11790 -20.94270 -20.91455 -19.18213 -18.37927 -17.58211 -16.72877 -16.51084 -16.19594 -15.99243 -15.85609 -15.36868 -14.95216 -14.60535 -14.46975 -14.09690 -13.78623 -13.48191 -13.35084 -13.19345 -13.00395 -12.97088 -12.63388 -12.29725 -12.04488 -11.96946 -11.59879 -11.23698 -10.93845 -10.77272 -10.56732 -10.40379 -10.26687 -10.16993 -9.68545 -9.42550 -9.11412 -8.94900 -8.88275 -8.46931 -7.77328 -6.07975 -4.12836 1.21764 2.16655 2.52414 2.82128 3.13911 3.25956 3.28507 3.35241 3.40117 3.82494 4.22574 4.30604 4.42125 4.65497 4.68697 4.90864 5.05990 5.22504 5.26873 5.31411 5.42914 5.47701 5.56980 5.59412 5.64956 5.69744 5.79507 6.04628 6.09769 6.19872 6.21901 6.39984 6.50343 6.75484 6.82107 7.00114 7.37504 7.45693 7.87850 7.96063 8.18458 8.28465 8.54134 8.79862 8.95923 9.52305 11.00151 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.017795 B = 0.002549 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.061413 B =10983.074073 C =11956.125102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.590 5.590 4 C 0.246 3.754 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.500 3.500 14 O -0.542 6.542 15 C 0.119 3.881 16 N -0.728 5.728 17 C 0.710 3.290 18 O -0.595 6.595 19 N -0.747 5.747 20 C 0.224 3.776 21 C -0.036 4.036 22 C -0.184 4.184 23 C -0.219 4.219 24 C -0.030 4.030 25 O -0.171 6.171 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.035 0.965 32 H 0.044 0.956 33 H 0.264 0.736 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.409 0.591 37 H 0.401 0.599 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.152 0.848 41 H 0.150 0.850 42 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.140 -0.657 22.761 23.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.022 4.022 3 N -0.321 5.321 4 C 0.127 3.873 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.286 3.714 14 O -0.420 6.420 15 C -0.009 4.009 16 N -0.386 5.386 17 C 0.410 3.590 18 O -0.473 6.473 19 N -0.404 5.404 20 C 0.100 3.900 21 C -0.086 4.086 22 C -0.204 4.204 23 C -0.238 4.238 24 C -0.098 4.098 25 O -0.066 6.066 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.246 0.754 37 H 0.235 0.765 38 H 0.117 0.883 39 H 0.102 0.898 40 H 0.169 0.831 41 H 0.168 0.832 42 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -4.057 -1.190 22.658 23.049 hybrid contribution 1.144 0.921 -0.448 1.536 sum -2.912 -0.268 22.210 22.402 Atomic orbital electron populations 1.22221 0.96509 1.01705 1.02359 1.21514 0.93764 0.83824 1.03127 1.48216 1.62984 1.13427 1.07469 1.19323 0.96436 0.93658 0.77869 1.21419 0.96850 1.32001 1.06336 0.92410 1.24935 0.97910 0.94878 0.96373 1.69930 1.35719 1.33367 1.14317 0.86488 0.84587 0.77695 0.78608 1.20607 1.21094 1.19891 1.20193 0.78921 0.87043 0.85289 1.90656 1.46433 1.18052 1.86857 1.21057 1.02558 0.92953 0.84370 1.44793 1.71679 1.18789 1.03364 1.15713 0.78686 0.84232 0.80372 1.90922 1.53432 1.18769 1.84209 1.45081 1.73395 1.17480 1.04444 1.19364 1.02271 0.91707 0.76648 1.22343 0.82840 1.01187 1.02272 1.21741 1.01237 0.96425 1.00961 1.21896 0.93669 1.03572 1.04655 1.24154 0.99934 0.88592 0.97146 1.84064 1.31679 1.41302 1.49580 0.92970 0.91985 0.91917 0.89591 0.91365 0.94738 0.93785 0.92682 0.89002 0.89039 0.75383 0.76472 0.88327 0.89773 0.83071 0.83207 0.77893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.24 37.16 0.38 -1.86 16 2 C 0.10 1.59 5.93 -4.04 -0.02 1.56 16 3 N -0.59 -11.99 2.46 -175.05 -0.43 -12.42 16 4 C 0.25 6.24 5.16 -5.19 -0.03 6.22 16 5 C -0.53 -14.65 9.39 -34.44 -0.32 -14.98 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 9 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.50 9.92 7.74 -10.98 -0.09 9.84 16 14 O -0.54 -12.70 15.25 5.55 0.08 -12.61 16 15 C 0.12 1.85 4.71 -5.19 -0.02 1.82 16 16 N -0.73 -10.68 5.53 -66.42 -0.37 -11.05 16 17 C 0.71 10.13 8.57 -86.92 -0.74 9.38 16 18 O -0.59 -10.17 16.34 5.29 0.09 -10.08 16 19 N -0.75 -8.13 5.55 -66.41 -0.37 -8.50 16 20 C 0.22 2.13 6.20 -5.19 -0.03 2.10 16 21 C -0.04 -0.33 6.69 -35.62 -0.24 -0.57 16 22 C -0.18 -1.51 10.81 -39.70 -0.43 -1.94 16 23 C -0.22 -1.60 10.91 -39.71 -0.43 -2.03 16 24 C -0.03 -0.21 12.09 29.41 0.36 0.14 16 25 O -0.17 -1.64 10.65 5.68 0.06 -1.58 16 26 H 0.05 0.66 7.22 -51.93 -0.37 0.29 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.09 1.39 8.07 -51.93 -0.42 0.97 16 30 H 0.07 0.91 6.44 -51.93 -0.33 0.57 16 31 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 32 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.09 1.38 7.40 -51.93 -0.38 0.99 16 35 H 0.09 1.31 7.18 -51.93 -0.37 0.94 16 36 H 0.41 5.92 7.45 -40.82 -0.30 5.62 16 37 H 0.40 3.77 8.48 -40.82 -0.35 3.43 16 38 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.15 1.03 8.06 -52.49 -0.42 0.60 16 41 H 0.15 0.78 8.06 -52.48 -0.42 0.36 16 42 H 0.20 0.70 8.06 -52.48 -0.42 0.28 16 LS Contribution 364.42 15.07 5.49 5.49 Total: -1.00 -34.64 364.42 -7.29 -41.93 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -5.85 Total: 6.35 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: -1.72 Total: 11.32 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: -0.43 Total: -57.44 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: 0.23 Total: -24.27 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.64 -7.29 -41.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121542903.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.482 kcal (2) G-P(sol) polarization free energy of solvation -34.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds