Wall clock time and date at job start Fri Apr 10 2020 18:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.49079 * 2 1 4 4 C 1.53052 * 109.50962 * 239.93968 * 2 1 3 5 5 N 1.46959 * 109.36380 * 181.62207 * 4 2 1 6 6 C 1.46900 * 111.00061 * 183.18617 * 5 4 2 7 7 C 1.50696 * 109.47281 * 170.30855 * 6 5 4 8 8 O 1.21297 * 120.00024 * 354.54228 * 7 6 5 9 9 N 1.34777 * 120.00219 * 174.54525 * 7 6 5 10 10 C 1.37097 * 120.00389 * 180.02562 * 9 7 6 11 11 H 1.08003 * 119.99578 * 359.97438 * 10 9 7 12 12 C 1.38941 * 120.00440 * 179.97438 * 10 9 7 13 13 N 1.31406 * 120.00538 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 119.99913 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.46745 * 89.99997 * 14 12 10 16 16 H 1.48497 * 109.47320 * 210.00355 * 14 12 10 17 17 H 1.48498 * 109.47087 * 330.00609 * 14 12 10 18 18 C 1.46958 * 110.88129 * 59.32216 * 5 4 2 19 19 C 1.53052 * 109.36310 * 300.67826 * 18 5 4 20 20 N 1.46954 * 109.36714 * 58.40260 * 19 18 5 21 21 C 1.46900 * 111.00400 * 176.81379 * 20 19 18 22 22 C 1.52998 * 109.46812 * 288.95077 * 21 20 19 23 23 F 1.39896 * 109.47436 * 65.96161 * 22 21 20 24 24 F 1.39904 * 109.47011 * 185.96274 * 22 21 20 25 25 F 1.39908 * 109.46926 * 305.95887 * 22 21 20 26 26 H 1.08995 * 109.47498 * 300.00888 * 1 2 3 27 27 H 1.09005 * 109.46889 * 60.00475 * 1 2 3 28 28 H 1.08994 * 109.47267 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.48940 * 301.58865 * 4 2 1 30 30 H 1.09002 * 109.48819 * 61.65733 * 4 2 1 31 31 H 1.08994 * 109.47318 * 290.31591 * 6 5 4 32 32 H 1.09004 * 109.46517 * 50.30917 * 6 5 4 33 33 H 0.96999 * 119.99703 * 359.97438 * 9 7 6 34 34 H 0.97001 * 120.00321 * 179.97438 * 13 12 10 35 35 H 1.09000 * 109.49313 * 180.71333 * 18 5 4 36 36 H 1.09000 * 109.49036 * 60.64469 * 18 5 4 37 37 H 1.09005 * 109.49192 * 298.43242 * 19 18 5 38 38 H 1.09005 * 109.51019 * 178.37782 * 19 18 5 39 39 H 1.09000 * 109.47244 * 48.94528 * 21 20 19 40 40 H 1.08995 * 109.47390 * 168.95121 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0411 -0.7226 -1.2486 5 7 3.5102 -0.7548 -1.2259 6 6 4.0421 -1.3748 -2.4468 7 6 5.5353 -1.1785 -2.5003 8 8 6.0879 -0.4973 -1.6625 9 7 6.2567 -1.7597 -3.4792 10 6 7.6152 -1.5816 -3.5276 11 1 8.1072 -0.9751 -2.7816 12 6 8.3591 -2.1812 -4.5364 13 7 9.6611 -2.0101 -4.5831 14 14 7.5082 -3.2308 -5.8263 15 1 7.1051 -2.3765 -6.9722 16 1 8.4399 -4.2860 -6.2992 17 1 6.3031 -3.8640 -5.2331 18 6 4.0004 -1.4483 -0.0266 19 6 3.4893 -0.7257 1.2221 20 7 2.0202 -0.6935 1.1994 21 6 1.4883 -0.0735 2.4203 22 6 1.7040 -1.0158 3.6063 23 9 3.0748 -1.1521 3.8503 24 9 1.0786 -0.4879 4.7410 25 9 1.1558 -2.2688 3.3120 26 1 -0.3634 0.5139 0.8898 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.6552 -1.7419 -1.2624 30 1 1.7027 -0.1932 -2.1393 31 1 3.8157 -2.4409 -2.4412 32 1 3.5830 -0.9105 -3.3196 33 1 5.8149 -2.3047 -4.1490 34 1 10.1804 -2.4290 -5.2872 35 1 5.0904 -1.4480 -0.0262 36 1 3.6367 -2.4759 -0.0265 37 1 3.8752 0.2936 1.2359 38 1 3.8276 -1.2548 2.1130 39 1 2.0061 0.8676 2.6052 40 1 0.4222 0.1165 2.2965 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128132372.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:19 Heat of formation + Delta-G solvation = -161.884182 kcal Electronic energy + Delta-G solvation = -26630.323028 eV Core-core repulsion = 22258.756488 eV Total energy + Delta-G solvation = -4371.566540 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.25099 -47.83035 -47.64988 -39.80322 -38.25538 -35.59746 -33.89422 -32.68663 -31.69146 -30.54557 -27.71124 -27.26514 -25.06094 -23.63683 -22.92170 -21.85568 -19.86877 -19.34139 -18.69674 -18.60393 -18.25363 -17.62466 -16.33502 -15.82908 -15.61685 -15.20651 -14.99970 -14.70213 -14.62423 -14.39206 -14.22842 -14.14307 -14.01840 -13.86425 -13.72110 -13.55788 -13.25550 -13.15526 -12.57576 -12.28282 -12.18020 -12.08301 -12.00982 -11.58387 -11.55800 -11.16965 -11.15274 -10.72955 -10.63062 -10.59093 -9.97849 -9.54129 -8.78356 -8.56016 -8.18376 -7.99163 -6.31310 -3.82732 2.51620 3.02389 3.06552 3.14916 3.27790 3.64336 3.73726 3.81931 3.86496 4.10077 4.22512 4.57793 4.69575 4.77418 4.84974 4.89602 5.06625 5.21091 5.26578 5.38289 5.39697 5.47652 5.51962 5.64765 5.68802 5.74545 5.80165 5.91976 5.95593 6.11076 6.29084 6.54603 6.69878 7.13762 7.26711 7.58400 8.14287 8.60143 8.95138 9.42357 9.83312 10.81818 Molecular weight = 309.14amu Principal moments of inertia in cm(-1) A = 0.026222 B = 0.003069 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.542877 B = 9121.306508 C = 9657.876339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.087 3.913 3 H 0.058 0.942 4 C 0.063 3.937 5 N -0.518 5.518 6 C 0.044 3.956 7 C 0.452 3.548 8 O -0.559 6.559 9 N -0.591 5.591 10 C -0.304 4.304 11 H 0.120 0.880 12 C 0.041 3.959 13 N -0.882 5.882 14 Si 0.879 3.121 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.270 1.270 18 C 0.058 3.942 19 C 0.039 3.961 20 N -0.531 5.531 21 C 0.002 3.998 22 C 0.457 3.543 23 F -0.180 7.180 24 F -0.187 7.187 25 F -0.173 7.173 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.042 0.958 30 H 0.081 0.919 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.370 0.630 34 H 0.273 0.727 35 H 0.107 0.893 36 H 0.035 0.965 37 H 0.053 0.947 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.584 1.652 10.674 24.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 H 0.076 0.924 4 C -0.066 4.066 5 N -0.242 5.242 6 C -0.087 4.087 7 C 0.238 3.762 8 O -0.441 6.441 9 N -0.231 5.231 10 C -0.433 4.433 11 H 0.137 0.863 12 C -0.161 4.161 13 N -0.522 5.522 14 Si 0.706 3.294 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.195 1.195 18 C -0.070 4.070 19 C -0.088 4.088 20 N -0.257 5.257 21 C -0.128 4.128 22 C 0.402 3.598 23 F -0.162 7.162 24 F -0.168 7.168 25 F -0.154 7.154 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.203 0.797 34 H 0.084 0.916 35 H 0.125 0.875 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -20.968 2.053 11.146 23.835 hybrid contribution -0.445 -1.067 -0.969 1.508 sum -21.413 0.986 10.177 23.729 Atomic orbital electron populations 1.21953 0.93914 1.02972 1.02006 1.21684 0.94900 0.96615 0.88831 0.92360 1.22191 0.88113 0.99474 0.96809 1.61748 1.06459 1.54284 1.01746 1.21870 0.95611 0.97740 0.93478 1.19643 0.87636 0.84676 0.84286 1.90541 1.71860 1.41522 1.40151 1.42222 1.08363 1.46149 1.26335 1.19421 0.80094 1.30413 1.13375 0.86276 1.25032 0.95406 0.97916 0.97787 1.69618 1.04948 1.43880 1.33723 0.86676 0.79560 0.80850 0.82325 1.19621 1.20200 1.19518 1.22275 1.02520 0.94405 0.87784 1.22678 0.84824 1.01394 0.99898 1.62125 1.10373 1.52866 1.00295 1.23319 1.05306 0.95016 0.89132 1.20533 0.73797 0.81265 0.84159 1.93114 1.32081 1.96187 1.94794 1.93178 1.82673 1.86407 1.54591 1.93203 1.85398 1.43671 1.93174 0.92373 0.91402 0.91402 0.93991 0.90045 0.93327 0.89096 0.79733 0.91617 0.87509 0.94721 0.92909 0.88638 0.90032 0.85986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 8.92 37.16 0.33 -0.76 16 2 C 0.09 0.89 2.56 -67.65 -0.17 0.72 16 3 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 4 C 0.06 0.74 4.89 -3.77 -0.02 0.72 16 5 N -0.52 -8.09 4.42 -235.91 -1.04 -9.13 16 6 C 0.04 0.73 5.45 -4.98 -0.03 0.70 16 7 C 0.45 10.09 7.36 -10.99 -0.08 10.01 16 8 O -0.56 -14.64 14.17 5.54 0.08 -14.56 16 9 N -0.59 -13.92 5.09 -10.97 -0.06 -13.98 16 10 C -0.30 -8.54 10.16 -14.94 -0.15 -8.69 16 11 H 0.12 3.82 7.39 -52.48 -0.39 3.44 16 12 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 13 N -0.88 -25.69 13.96 55.49 0.77 -24.92 16 14 Si 0.88 19.26 27.74 -169.99 -4.71 14.55 16 15 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 16 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 18 C 0.06 0.92 5.26 -3.77 -0.02 0.90 16 19 C 0.04 0.52 5.28 -3.77 -0.02 0.50 16 20 N -0.53 -5.86 4.31 -226.49 -0.98 -6.83 16 21 C 0.00 0.02 4.91 -3.82 -0.02 0.00 16 22 C 0.46 4.63 3.23 37.16 0.12 4.75 16 23 F -0.18 -2.09 14.40 2.25 0.03 -2.06 16 24 F -0.19 -1.84 17.32 2.25 0.04 -1.80 16 25 F -0.17 -2.00 17.13 2.25 0.04 -1.96 16 26 H 0.06 0.35 6.06 -51.93 -0.31 0.03 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 31 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 32 H 0.09 1.29 8.03 -51.93 -0.42 0.88 16 33 H 0.37 7.66 5.76 -40.82 -0.24 7.42 16 34 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.11 2.06 6.02 -51.93 -0.31 1.74 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.10 1.25 5.32 -51.93 -0.28 0.98 16 39 H 0.08 0.64 8.07 -51.93 -0.42 0.22 16 40 H 0.12 0.80 5.53 -51.93 -0.29 0.52 16 LS Contribution 328.33 15.07 4.95 4.95 Total: -1.00 -31.97 328.33 -6.23 -38.20 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -5.20 Total: 7.66 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -0.15 Total: 9.89 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -1.30 Total: -54.86 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: 0.08 Total: -14.56 kcal Atomic # 9 Polarization: -5.93 SS G_CDS: 0.11 Total: -5.82 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.71 Total: 14.55 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.97 -6.23 -38.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128132372.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.689 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds