Wall clock time and date at job start Fri Apr 10 2020 18:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.49079 * 2 1 4 4 C 1.53052 * 109.50962 * 239.93968 * 2 1 3 5 5 N 1.46959 * 109.36380 * 181.62207 * 4 2 1 6 6 C 1.46900 * 111.00061 * 183.18617 * 5 4 2 7 7 C 1.50696 * 109.47281 * 170.30855 * 6 5 4 8 8 O 1.21297 * 120.00024 * 354.54228 * 7 6 5 9 9 N 1.34777 * 120.00219 * 174.54525 * 7 6 5 10 10 C 1.37097 * 120.00389 * 180.02562 * 9 7 6 11 11 H 1.08003 * 119.99578 * 359.97438 * 10 9 7 12 12 C 1.38941 * 120.00440 * 179.97438 * 10 9 7 13 13 N 1.31406 * 120.00538 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 119.99913 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.46745 * 89.99997 * 14 12 10 16 16 H 1.48497 * 109.47320 * 210.00355 * 14 12 10 17 17 H 1.48498 * 109.47087 * 330.00609 * 14 12 10 18 18 C 1.46958 * 110.88129 * 59.32216 * 5 4 2 19 19 C 1.53052 * 109.36310 * 300.67826 * 18 5 4 20 20 N 1.46954 * 109.36714 * 58.40260 * 19 18 5 21 21 C 1.46900 * 111.00400 * 176.81379 * 20 19 18 22 22 C 1.52998 * 109.46812 * 288.95077 * 21 20 19 23 23 F 1.39896 * 109.47436 * 65.96161 * 22 21 20 24 24 F 1.39904 * 109.47011 * 185.96274 * 22 21 20 25 25 F 1.39908 * 109.46926 * 305.95887 * 22 21 20 26 26 H 1.08995 * 109.47498 * 300.00888 * 1 2 3 27 27 H 1.09005 * 109.46889 * 60.00475 * 1 2 3 28 28 H 1.08994 * 109.47267 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.48940 * 301.58865 * 4 2 1 30 30 H 1.09002 * 109.48819 * 61.65733 * 4 2 1 31 31 H 1.08994 * 109.47318 * 290.31591 * 6 5 4 32 32 H 1.09004 * 109.46517 * 50.30917 * 6 5 4 33 33 H 0.96999 * 119.99703 * 359.97438 * 9 7 6 34 34 H 0.97001 * 120.00321 * 179.97438 * 13 12 10 35 35 H 1.09000 * 109.49313 * 180.71333 * 18 5 4 36 36 H 1.09000 * 109.49036 * 60.64469 * 18 5 4 37 37 H 1.09005 * 109.49192 * 298.43242 * 19 18 5 38 38 H 1.09005 * 109.51019 * 178.37782 * 19 18 5 39 39 H 1.09000 * 109.47244 * 48.94528 * 21 20 19 40 40 H 1.08995 * 109.47390 * 168.95121 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0411 -0.7226 -1.2486 5 7 3.5102 -0.7548 -1.2259 6 6 4.0421 -1.3748 -2.4468 7 6 5.5353 -1.1785 -2.5003 8 8 6.0879 -0.4973 -1.6625 9 7 6.2567 -1.7597 -3.4792 10 6 7.6152 -1.5816 -3.5276 11 1 8.1072 -0.9751 -2.7816 12 6 8.3591 -2.1812 -4.5364 13 7 9.6611 -2.0101 -4.5831 14 14 7.5082 -3.2308 -5.8263 15 1 7.1051 -2.3765 -6.9722 16 1 8.4399 -4.2860 -6.2992 17 1 6.3031 -3.8640 -5.2331 18 6 4.0004 -1.4483 -0.0266 19 6 3.4893 -0.7257 1.2221 20 7 2.0202 -0.6935 1.1994 21 6 1.4883 -0.0735 2.4203 22 6 1.7040 -1.0158 3.6063 23 9 3.0748 -1.1521 3.8503 24 9 1.0786 -0.4879 4.7410 25 9 1.1558 -2.2688 3.3120 26 1 -0.3634 0.5139 0.8898 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.6552 -1.7419 -1.2624 30 1 1.7027 -0.1932 -2.1393 31 1 3.8157 -2.4409 -2.4412 32 1 3.5830 -0.9105 -3.3196 33 1 5.8149 -2.3047 -4.1490 34 1 10.1804 -2.4290 -5.2872 35 1 5.0904 -1.4480 -0.0262 36 1 3.6367 -2.4759 -0.0265 37 1 3.8752 0.2936 1.2359 38 1 3.8276 -1.2548 2.1130 39 1 2.0061 0.8676 2.6052 40 1 0.4222 0.1165 2.2965 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128132372.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:19 Heat of formation + Delta-G solvation = -187.290437 kcal Electronic energy + Delta-G solvation = -26631.424726 eV Core-core repulsion = 22258.756488 eV Total energy + Delta-G solvation = -4372.668238 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.07968 -48.66281 -48.49364 -40.96247 -39.84218 -36.80845 -35.83211 -33.75358 -33.52670 -31.59821 -29.01604 -28.09156 -26.62779 -24.96351 -23.78953 -22.90090 -21.23210 -20.81331 -20.16138 -19.52653 -19.42627 -18.45385 -17.80136 -17.00511 -16.83871 -16.55257 -16.31717 -15.83720 -15.58477 -15.50124 -15.37147 -15.23876 -14.90608 -14.86392 -14.83304 -14.71116 -14.58538 -14.33168 -14.13602 -13.80761 -13.23631 -12.95918 -12.92161 -12.78653 -12.64043 -12.55606 -12.40793 -12.06498 -11.98829 -11.75601 -11.59435 -11.44840 -10.36736 -10.22652 -9.64052 -9.23219 -8.40613 -6.01287 1.30589 1.35974 1.44796 1.73941 1.97055 2.23527 2.44052 2.60275 2.87338 3.06901 3.15016 3.20896 3.41636 3.74911 3.92832 3.99347 4.15534 4.22533 4.23376 4.32595 4.38600 4.41686 4.53077 4.55454 4.69680 4.81657 4.85763 4.91622 5.07591 5.08476 5.37267 5.53035 5.67347 5.77348 5.92122 6.02207 6.18217 6.60946 6.89580 7.41136 7.98656 8.77157 Molecular weight = 309.14amu Principal moments of inertia in cm(-1) A = 0.026222 B = 0.003069 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.542877 B = 9121.306508 C = 9657.876339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.086 3.914 3 H 0.051 0.949 4 C 0.062 3.938 5 N -0.538 5.538 6 C 0.056 3.944 7 C 0.451 3.549 8 O -0.605 6.605 9 N -0.592 5.592 10 C -0.327 4.327 11 H 0.055 0.945 12 C -0.016 4.016 13 N -0.936 5.936 14 Si 0.965 3.035 15 H -0.256 1.256 16 H -0.276 1.276 17 H -0.232 1.232 18 C 0.062 3.938 19 C 0.049 3.951 20 N -0.534 5.534 21 C 0.006 3.994 22 C 0.456 3.544 23 F -0.193 7.193 24 F -0.184 7.184 25 F -0.182 7.182 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.049 0.951 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.125 0.875 33 H 0.389 0.611 34 H 0.279 0.721 35 H 0.061 0.939 36 H 0.038 0.962 37 H 0.037 0.963 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.773 0.831 9.360 27.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.021 4.021 3 H 0.069 0.931 4 C -0.065 4.065 5 N -0.263 5.263 6 C -0.075 4.075 7 C 0.239 3.761 8 O -0.489 6.489 9 N -0.234 5.234 10 C -0.456 4.456 11 H 0.073 0.927 12 C -0.214 4.214 13 N -0.577 5.577 14 Si 0.785 3.215 15 H -0.180 1.180 16 H -0.201 1.201 17 H -0.155 1.155 18 C -0.066 4.066 19 C -0.079 4.079 20 N -0.260 5.260 21 C -0.123 4.123 22 C 0.401 3.599 23 F -0.175 7.175 24 F -0.166 7.166 25 F -0.163 7.163 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.120 0.880 31 H 0.092 0.908 32 H 0.143 0.857 33 H 0.225 0.775 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -25.203 1.237 9.847 27.087 hybrid contribution 0.893 -0.715 -0.415 1.217 sum -24.309 0.522 9.432 26.080 Atomic orbital electron populations 1.21916 0.91063 1.03438 1.03606 1.21782 0.96958 0.95698 0.87690 0.93142 1.22355 0.85106 1.00486 0.98595 1.61708 1.09222 1.54357 1.01001 1.21810 0.90520 0.99844 0.95324 1.20903 0.90291 0.82476 0.82471 1.90529 1.73667 1.43104 1.41636 1.42044 1.06655 1.47186 1.27561 1.18989 0.82521 1.31068 1.13009 0.92728 1.26108 0.95995 0.99063 1.00237 1.69804 1.07315 1.45385 1.35164 0.85362 0.79364 0.78414 0.78357 1.18013 1.20145 1.15542 1.22072 0.99924 0.95166 0.89435 1.22452 0.86834 1.00038 0.98532 1.62090 1.08360 1.53785 1.01727 1.23440 1.06990 0.94595 0.87325 1.20785 0.73151 0.81210 0.84756 1.93093 1.33198 1.96257 1.94910 1.93182 1.82516 1.86275 1.54597 1.93185 1.85443 1.44424 1.93246 0.90800 0.89879 0.91423 0.93229 0.87970 0.90766 0.85706 0.77545 0.91181 0.92037 0.94348 0.94441 0.88870 0.88948 0.83135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.92 71.98 0.64 -0.81 16 2 C 0.09 1.50 2.56 44.92 0.12 1.61 16 3 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 4 C 0.06 1.25 4.89 86.31 0.42 1.67 16 5 N -0.54 -16.03 4.42 -900.29 -3.98 -20.01 16 6 C 0.06 1.71 5.45 85.56 0.47 2.18 16 7 C 0.45 20.33 7.36 87.66 0.65 20.98 16 8 O -0.61 -33.45 14.17 -3.08 -0.04 -33.49 16 9 N -0.59 -27.93 5.09 -306.99 -1.56 -29.49 16 10 C -0.33 -19.19 10.16 84.04 0.85 -18.34 16 11 H 0.05 3.83 7.39 -2.91 -0.02 3.81 16 12 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 13 N -0.94 -56.73 13.96 21.66 0.30 -56.43 16 14 Si 0.97 38.79 27.74 68.60 1.90 40.70 16 15 H -0.26 -9.69 7.11 99.48 0.71 -8.99 16 16 H -0.28 -11.07 7.11 99.48 0.71 -10.37 16 17 H -0.23 -7.85 6.52 99.48 0.65 -7.20 16 18 C 0.06 2.00 5.26 86.31 0.45 2.45 16 19 C 0.05 1.32 5.28 86.31 0.46 1.77 16 20 N -0.53 -10.72 4.31 -870.47 -3.75 -14.48 16 21 C 0.01 0.09 4.91 86.30 0.42 0.51 16 22 C 0.46 8.56 3.23 71.98 0.23 8.80 16 23 F -0.19 -4.43 14.40 44.97 0.65 -3.78 16 24 F -0.18 -3.31 17.32 44.97 0.78 -2.53 16 25 F -0.18 -3.91 17.13 44.97 0.77 -3.14 16 26 H 0.07 0.54 6.06 -2.39 -0.01 0.52 16 27 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.10 1.66 8.07 -2.39 -0.02 1.64 16 31 H 0.07 1.94 8.12 -2.39 -0.02 1.92 16 32 H 0.13 3.03 8.03 -2.39 -0.02 3.01 16 33 H 0.39 15.14 5.76 -92.71 -0.53 14.61 16 34 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 35 H 0.06 2.52 6.02 -2.39 -0.01 2.51 16 36 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.09 2.50 5.32 -2.38 -0.01 2.49 16 39 H 0.09 1.24 8.07 -2.39 -0.02 1.22 16 40 H 0.15 1.40 5.53 -2.39 -0.01 1.38 16 Total: -1.00 -76.28 328.33 0.73 -75.55 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 0.49 Total: 26.68 kcal Atomic # 6 Polarization: 15.24 SS G_CDS: 5.18 Total: 20.41 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -8.99 Total: -120.40 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -0.04 Total: -33.49 kcal Atomic # 9 Polarization: -11.64 SS G_CDS: 2.20 Total: -9.45 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 1.90 Total: 40.70 kcal Total: -76.28 0.73 -75.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128132372.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.742 kcal (2) G-P(sol) polarization free energy of solvation -76.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds