Wall clock time and date at job start Fri Apr 10 2020 18:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.46950 * 2 1 4 4 C 1.50695 * 109.47518 * 239.99752 * 2 1 3 5 5 H 1.07997 * 120.00446 * 245.58664 * 4 2 1 6 6 C 1.37883 * 119.99801 * 65.57983 * 4 2 1 7 7 N 1.31516 * 120.00014 * 198.29137 * 6 4 2 8 8 Si 1.86803 * 120.00001 * 18.57489 * 6 4 2 9 9 H 1.48502 * 109.46996 * 179.72365 * 8 6 4 10 10 H 1.48498 * 109.46761 * 299.71964 * 8 6 4 11 11 H 1.48496 * 109.47235 * 59.72150 * 8 6 4 12 12 N 1.46900 * 109.47259 * 119.99389 * 2 1 3 13 13 C 1.46903 * 110.99472 * 58.95482 * 12 2 1 14 14 C 1.46897 * 111.00093 * 295.00639 * 12 2 1 15 15 C 1.50699 * 109.46951 * 189.99667 * 14 12 2 16 16 O 1.21236 * 120.00195 * 0.02562 * 15 14 12 17 17 N 1.34780 * 120.00125 * 179.97438 * 15 14 12 18 18 C 1.34776 * 120.00086 * 180.02562 * 17 15 14 19 19 O 1.21540 * 120.00409 * 359.97438 * 18 17 15 20 20 N 1.34778 * 119.99687 * 179.97438 * 18 17 15 21 21 C 1.46508 * 119.99609 * 179.97438 * 20 18 17 22 22 C 1.50699 * 109.46985 * 179.97438 * 21 20 18 23 23 C 1.34512 * 125.78918 * 89.99918 * 22 21 20 24 24 C 1.41376 * 106.84392 * 180.02562 * 23 22 21 25 25 C 1.34514 * 106.84174 * 0.02562 * 24 23 22 26 26 O 1.34301 * 125.78958 * 269.69357 * 22 21 20 27 27 H 1.09005 * 109.47053 * 54.32166 * 1 2 3 28 28 H 1.08997 * 109.47167 * 174.31792 * 1 2 3 29 29 H 1.09000 * 109.47599 * 294.31912 * 1 2 3 30 30 H 0.97002 * 119.99810 * 355.24611 * 7 6 4 31 31 H 1.08998 * 109.47081 * 60.00563 * 13 12 2 32 32 H 1.09008 * 109.46951 * 179.97438 * 13 12 2 33 33 H 1.08997 * 109.47794 * 299.99940 * 13 12 2 34 34 H 1.08997 * 109.46906 * 309.99690 * 14 12 2 35 35 H 1.08997 * 109.47330 * 69.99922 * 14 12 2 36 36 H 0.96999 * 120.00096 * 359.97438 * 17 15 14 37 37 H 0.97001 * 120.00380 * 359.97438 * 20 18 17 38 38 H 1.08997 * 109.47389 * 299.99887 * 21 20 18 39 39 H 1.08997 * 109.46957 * 60.00186 * 21 20 18 40 40 H 1.08002 * 126.58022 * 0.03497 * 23 22 21 41 41 H 1.07999 * 126.58622 * 179.97438 * 24 23 22 42 42 H 1.07999 * 125.80009 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5769 -1.6381 -1.1338 6 6 1.7968 -0.1761 -2.4794 7 7 1.9005 -0.9341 -3.5491 8 14 1.3379 1.6264 -2.6529 9 1 1.1452 1.9521 -4.0889 10 1 0.0782 1.8899 -1.9122 11 1 2.4256 2.4699 -2.0956 12 7 2.0196 -0.6924 1.1995 13 6 1.5283 -2.0760 1.2461 14 6 1.6486 0.0393 2.4180 15 6 2.3678 -0.5569 3.6006 16 8 3.1158 -1.4980 3.4437 17 7 2.1801 -0.0433 4.8325 18 6 2.8237 -0.5762 5.8899 19 8 3.5730 -1.5202 5.7328 20 7 2.6365 -0.0623 7.1217 21 6 3.3356 -0.6419 8.2713 22 6 2.9565 0.1098 9.5211 23 6 1.9257 -0.1843 10.3338 24 6 1.9393 0.7719 11.3751 25 6 2.9771 1.5936 11.1362 26 8 3.5938 1.1836 10.0156 27 1 -0.3633 0.5994 -0.8348 28 1 -0.3633 -1.0226 -0.1017 29 1 -0.3634 0.4232 0.9364 30 1 2.2094 -1.8499 -3.4665 31 1 1.8763 -2.6150 0.3649 32 1 1.9060 -2.5657 2.1437 33 1 0.4384 -2.0742 1.2640 34 1 1.9296 1.0871 2.3124 35 1 0.5721 -0.0344 2.5726 36 1 1.5825 0.7103 4.9579 37 1 2.0388 0.6914 7.2471 38 1 3.0540 -1.6895 8.3775 39 1 4.4121 -0.5690 8.1164 40 1 1.2228 -0.9954 10.2141 41 1 1.2484 0.8319 12.2030 42 1 3.2689 2.4364 11.7453 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129559432.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:25 Heat of formation + Delta-G solvation = -51.941113 kcal Electronic energy + Delta-G solvation = -24873.904170 eV Core-core repulsion = 21048.961859 eV Total energy + Delta-G solvation = -3824.942310 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.56048 -42.24712 -40.03481 -38.39750 -36.20853 -35.68807 -34.72733 -33.92286 -31.73257 -31.35059 -29.40378 -27.16974 -26.86941 -25.80063 -23.22835 -22.71035 -21.79278 -21.47274 -21.05003 -19.99151 -19.38026 -18.58255 -17.97320 -17.37193 -17.25470 -16.67611 -16.33308 -16.15005 -16.00322 -15.66556 -15.35215 -15.24500 -14.91592 -14.39334 -14.29935 -14.09160 -13.83527 -13.76728 -13.54524 -13.23311 -13.14211 -13.02616 -12.59217 -12.55378 -12.18523 -12.08557 -11.70377 -11.52290 -11.23591 -10.98470 -10.91604 -10.72873 -10.33251 -10.28268 -9.55870 -8.98208 -8.69987 -6.27770 0.51254 1.02207 1.30495 1.49389 1.61406 1.71167 1.77867 2.02034 2.18934 2.56307 2.87064 3.13573 3.31803 3.58241 3.73069 4.10184 4.11894 4.27896 4.33964 4.35004 4.44443 4.44935 4.57394 4.65887 4.77834 4.85113 4.88216 4.99404 5.00606 5.08538 5.13239 5.15182 5.23730 5.48316 5.55864 5.56208 5.81662 6.09070 6.15405 6.24021 6.42281 6.59334 6.76070 7.12589 7.27355 7.50814 8.69448 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.033660 B = 0.002285 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.660001 B =12249.612339 C =12624.623215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.189 3.811 3 H 0.048 0.952 4 C -0.590 4.590 5 H 0.013 0.987 6 C -0.029 4.029 7 N -0.942 5.942 8 Si 1.089 2.911 9 H -0.296 1.296 10 H -0.230 1.230 11 H -0.263 1.263 12 N -0.539 5.539 13 C 0.045 3.955 14 C 0.036 3.964 15 C 0.519 3.481 16 O -0.505 6.505 17 N -0.670 5.670 18 C 0.696 3.304 19 O -0.587 6.587 20 N -0.715 5.715 21 C 0.221 3.779 22 C -0.055 4.055 23 C -0.180 4.180 24 C -0.230 4.230 25 C -0.025 4.025 26 O -0.190 6.190 27 H 0.056 0.944 28 H 0.034 0.966 29 H 0.071 0.929 30 H 0.247 0.753 31 H 0.034 0.966 32 H 0.060 0.940 33 H 0.032 0.968 34 H 0.136 0.864 35 H 0.100 0.900 36 H 0.435 0.565 37 H 0.418 0.582 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.162 0.838 41 H 0.170 0.830 42 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.495 11.632 33.243 35.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.081 3.919 3 H 0.066 0.934 4 C -0.628 4.628 5 H 0.031 0.969 6 C -0.225 4.225 7 N -0.579 5.579 8 Si 0.909 3.091 9 H -0.223 1.223 10 H -0.154 1.154 11 H -0.188 1.188 12 N -0.263 5.263 13 C -0.103 4.103 14 C -0.095 4.095 15 C 0.306 3.694 16 O -0.374 6.374 17 N -0.339 5.339 18 C 0.396 3.604 19 O -0.462 6.462 20 N -0.374 5.374 21 C 0.098 3.902 22 C -0.104 4.104 23 C -0.200 4.200 24 C -0.249 4.249 25 C -0.093 4.093 26 O -0.086 6.086 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.090 0.910 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.154 0.846 35 H 0.118 0.882 36 H 0.275 0.725 37 H 0.256 0.744 38 H 0.120 0.880 39 H 0.093 0.907 40 H 0.180 0.820 41 H 0.188 0.812 42 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -5.008 11.422 31.737 34.099 hybrid contribution -0.560 -1.436 0.886 1.778 sum -5.568 9.986 32.623 34.568 Atomic orbital electron populations 1.22743 0.98781 1.00899 1.01631 1.19559 0.90900 0.94475 0.86939 0.93430 1.22162 1.38810 1.08777 0.93025 0.96859 1.27360 0.94434 1.09073 0.91660 1.71008 1.45139 1.08822 1.32891 0.83577 0.79239 0.70012 0.76276 1.22283 1.15360 1.18809 1.61750 1.60750 1.02358 1.01465 1.22145 0.97001 0.90413 1.00750 1.22182 0.99509 1.00452 0.87340 1.21445 0.81392 0.82726 0.83838 1.90798 1.34890 1.27225 1.84508 1.43884 1.46921 1.36647 1.06440 1.16273 0.80589 0.82293 0.81257 1.91070 1.40297 1.30108 1.84744 1.45084 1.50472 1.37787 1.04095 1.19375 0.97497 0.95466 0.77859 1.22044 0.97071 0.92102 0.99217 1.22013 0.99565 1.02606 0.95823 1.22225 1.02359 0.97664 1.02672 1.24913 0.94478 1.01945 0.87919 1.84055 1.49721 1.38794 1.36035 0.92484 0.94654 0.91039 0.94445 0.94668 0.92127 0.94998 0.84598 0.88249 0.72541 0.74405 0.87962 0.90688 0.82014 0.81236 0.74643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.85 8.12 71.98 0.58 -6.26 16 2 C 0.19 8.38 1.93 44.17 0.09 8.47 16 3 H 0.05 2.00 6.67 -2.39 -0.02 1.99 16 4 C -0.59 -33.77 8.31 25.60 0.21 -33.56 16 5 H 0.01 0.87 6.78 -2.91 -0.02 0.85 16 6 C -0.03 -1.65 5.34 84.66 0.45 -1.20 16 7 N -0.94 -60.03 13.70 21.45 0.29 -59.74 16 8 Si 1.09 47.73 26.46 68.60 1.82 49.55 16 9 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 10 H -0.23 -8.36 5.53 99.48 0.55 -7.81 16 11 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 12 N -0.54 -22.40 4.48 -906.07 -4.06 -26.45 16 13 C 0.05 1.94 8.53 127.69 1.09 3.03 16 14 C 0.04 1.00 4.90 85.56 0.42 1.42 16 15 C 0.52 15.88 7.46 87.66 0.65 16.54 16 16 O -0.50 -22.08 12.73 19.87 0.25 -21.82 16 17 N -0.67 -13.49 5.24 -440.52 -2.31 -15.80 16 18 C 0.70 17.25 8.50 179.05 1.52 18.77 16 19 O -0.59 -22.06 14.74 18.92 0.28 -21.79 16 20 N -0.72 -10.78 5.55 -482.34 -2.68 -13.45 16 21 C 0.22 3.46 6.20 85.63 0.53 3.99 16 22 C -0.05 -0.73 6.69 24.83 0.17 -0.56 16 23 C -0.18 -1.99 10.81 22.19 0.24 -1.75 16 24 C -0.23 -2.01 10.91 22.19 0.24 -1.77 16 25 C -0.02 -0.21 12.09 66.97 0.81 0.60 16 26 O -0.19 -2.66 10.65 -2.57 -0.03 -2.69 16 27 H 0.06 2.18 4.88 -2.38 -0.01 2.17 16 28 H 0.03 1.43 6.71 -2.39 -0.02 1.41 16 29 H 0.07 1.99 6.49 -2.39 -0.02 1.98 16 30 H 0.25 16.23 8.73 -92.71 -0.81 15.42 16 31 H 0.03 1.76 6.43 -2.39 -0.02 1.74 16 32 H 0.06 2.60 5.83 -2.38 -0.01 2.59 16 33 H 0.03 1.22 6.41 -2.39 -0.02 1.21 16 34 H 0.14 2.91 8.00 -2.39 -0.02 2.89 16 35 H 0.10 2.08 6.81 -2.39 -0.02 2.07 16 36 H 0.43 3.59 8.71 -92.71 -0.81 2.79 16 37 H 0.42 3.35 8.48 -92.71 -0.79 2.56 16 38 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 41 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 42 H 0.24 0.08 8.06 -2.91 -0.02 0.05 16 Total: -1.00 -90.17 344.47 -0.13 -90.30 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -0.71 Total: 14.19 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 7.01 Total: 7.71 kcal Atomic # 7 Polarization: -106.69 SS G_CDS: -8.75 Total: -115.45 kcal Atomic # 8 Polarization: -46.80 SS G_CDS: 0.50 Total: -46.30 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 1.82 Total: 49.55 kcal Total: -90.17 -0.13 -90.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129559432.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.359 kcal (2) G-P(sol) polarization free energy of solvation -90.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds