Wall clock time and date at job start Fri Apr 10 2020 17:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00161 * 2 1 4 4 H 1.48504 * 109.47088 * 239.99997 * 3 2 1 5 5 H 1.48494 * 109.47009 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47347 * 119.99967 * 3 2 1 7 7 C 1.38819 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99975 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00094 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64583 * 0.03301 * 9 7 2 11 11 C 1.54914 * 104.82992 * 204.09666 * 10 9 7 12 12 C 1.55405 * 101.66697 * 323.07703 * 11 10 9 13 13 H 1.09000 * 110.69068 * 277.04987 * 12 11 10 14 14 C 1.52995 * 110.85058 * 153.70010 * 12 11 10 15 15 N 1.46500 * 109.46848 * 180.08666 * 14 12 11 16 16 C 1.34783 * 119.99855 * 179.97438 * 15 14 12 17 17 O 1.21281 * 119.99953 * 359.97438 * 16 15 14 18 18 C 1.50697 * 119.99743 * 179.97438 * 16 15 14 19 19 C 1.53008 * 109.46885 * 180.02562 * 18 16 15 20 20 H 1.08995 * 110.53887 * 54.29896 * 19 18 16 21 21 C 1.54225 * 110.60297 * 177.14624 * 19 18 16 22 22 C 1.51316 * 103.55458 * 118.51648 * 21 19 18 23 23 O 1.21223 * 125.40149 * 179.97438 * 22 21 19 24 24 N 1.33874 * 109.20761 * 0.02562 * 22 21 19 25 25 C 1.34228 * 114.52719 * 0.08941 * 24 22 21 26 26 O 1.21225 * 125.59095 * 179.97438 * 25 24 22 27 27 C 1.47018 * 125.64899 * 179.97438 * 9 7 2 28 28 H 0.96998 * 120.00119 * 359.97438 * 1 2 3 29 29 H 1.08999 * 110.36956 * 322.94042 * 10 9 7 30 30 H 1.09001 * 110.36709 * 85.15235 * 10 9 7 31 31 H 1.09000 * 111.00339 * 81.07133 * 11 10 9 32 32 H 1.09001 * 111.00161 * 204.91727 * 11 10 9 33 33 H 1.08999 * 109.47410 * 300.08640 * 14 12 11 34 34 H 1.08997 * 109.47486 * 60.08432 * 14 12 11 35 35 H 0.96999 * 119.99864 * 359.97438 * 15 14 12 36 36 H 1.09003 * 109.47403 * 299.99829 * 18 16 15 37 37 H 1.09002 * 109.47369 * 60.00307 * 18 16 15 38 38 H 1.08995 * 110.60756 * 237.03370 * 21 19 18 39 39 H 1.09002 * 110.61199 * 359.84949 * 21 19 18 40 40 H 0.96998 * 122.76850 * 180.02562 * 24 22 21 41 41 H 1.09002 * 109.88241 * 298.39024 * 27 9 7 42 42 H 1.09000 * 109.88049 * 59.40154 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1415 -2.5332 -0.0007 11 6 -0.4021 -3.9323 0.6112 12 6 0.7808 -4.7551 0.0292 13 1 0.5495 -5.1029 -0.9776 14 6 1.1277 -5.9316 0.9437 15 7 2.2455 -6.6839 0.3686 16 6 2.7259 -7.7698 1.0063 17 8 2.2331 -8.1239 2.0564 18 6 3.8754 -8.5440 0.4145 19 6 4.2225 -9.7206 1.3290 20 1 3.3397 -10.3311 1.5184 21 6 5.3500 -10.5731 0.7123 22 6 6.4673 -10.4715 1.7277 23 8 7.5529 -11.0025 1.6328 24 7 6.0666 -9.7030 2.7480 25 6 4.8170 -9.2273 2.6301 26 8 4.2545 -8.5150 3.4337 27 6 1.9318 -3.7275 0.0005 28 1 -0.4850 0.8400 0.0004 29 1 -0.5998 -1.7587 0.6143 30 1 -0.5266 -2.4851 -1.0193 31 1 -0.3535 -3.8979 1.6996 32 1 -1.3592 -4.3327 0.2769 33 1 1.4101 -5.5564 1.9273 34 1 0.2608 -6.5854 1.0395 35 1 2.6399 -6.4005 -0.4710 36 1 3.5925 -8.9198 -0.5688 37 1 4.7424 -7.8904 0.3179 38 1 5.0291 -11.6084 0.5975 39 1 5.6619 -10.1607 -0.2472 40 1 6.6324 -9.5064 3.5110 41 1 2.5287 -3.8643 -0.9012 42 1 2.5600 -3.8500 0.8828 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753140293.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:38 Heat of formation + Delta-G solvation = -81.166166 kcal Electronic energy + Delta-G solvation = -25189.268904 eV Core-core repulsion = 21363.059300 eV Total energy + Delta-G solvation = -3826.209604 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.15978 -39.71913 -38.77264 -37.63343 -36.20348 -34.67128 -33.89714 -32.51074 -30.11788 -29.18173 -28.02346 -25.86017 -25.11672 -23.44324 -22.14737 -21.38357 -20.52728 -19.90302 -19.56868 -18.24441 -17.43974 -16.97446 -16.70631 -16.48749 -15.93942 -15.67145 -15.27323 -14.76455 -14.64142 -14.41183 -14.19036 -13.97803 -13.66658 -13.39457 -13.10110 -12.78460 -12.51717 -12.36219 -11.79211 -11.73991 -11.67900 -11.48099 -11.02744 -10.97034 -10.79777 -10.62429 -10.44621 -10.28093 -10.16300 -10.02555 -9.89958 -9.71977 -9.50560 -8.92922 -8.65970 -6.84890 -5.66658 -3.08432 1.16745 2.36542 2.41464 2.65715 3.11226 3.39508 3.43722 3.45075 3.65367 3.80267 3.94949 4.20069 4.47525 4.62666 4.81450 4.86723 5.02880 5.12068 5.16376 5.25834 5.36983 5.39553 5.51619 5.63143 5.69384 5.88550 6.06955 6.13095 6.27387 6.33651 6.46192 6.53470 6.58077 6.71118 6.89893 6.95201 7.49930 7.53040 7.54977 7.60966 7.84631 8.25907 8.35499 9.20875 9.81900 10.46680 11.37269 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.021909 B = 0.002574 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.688465 B =10876.742830 C =11575.165759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.011 4.011 3 Si 0.915 3.085 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.224 4.224 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.151 3.849 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.075 0.925 14 C 0.134 3.866 15 N -0.726 5.726 16 C 0.501 3.499 17 O -0.518 6.518 18 C -0.130 4.130 19 C -0.109 4.109 20 H 0.133 0.867 21 C -0.156 4.156 22 C 0.531 3.469 23 O -0.490 6.490 24 N -0.686 5.686 25 C 0.523 3.477 26 O -0.438 6.438 27 C 0.142 3.858 28 H 0.253 0.747 29 H 0.107 0.893 30 H 0.012 0.988 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.400 0.600 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.414 0.586 41 H 0.017 0.983 42 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.277 -22.268 -1.473 23.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.352 4.352 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.134 4.134 13 H 0.094 0.906 14 C 0.011 3.989 15 N -0.378 5.378 16 C 0.285 3.715 17 O -0.393 6.393 18 C -0.170 4.170 19 C -0.131 4.131 20 H 0.151 0.849 21 C -0.195 4.195 22 C 0.319 3.681 23 O -0.362 6.362 24 N -0.353 5.353 25 C 0.308 3.692 26 O -0.304 6.304 27 C 0.016 3.984 28 H 0.063 0.937 29 H 0.125 0.875 30 H 0.030 0.970 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.234 0.766 36 H 0.132 0.868 37 H 0.117 0.883 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.253 0.747 41 H 0.035 0.965 42 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 7.002 -22.189 -0.440 23.271 hybrid contribution 1.015 1.117 -0.150 1.517 sum 8.016 -21.072 -0.589 22.553 Atomic orbital electron populations 1.69782 1.04898 1.24919 1.57521 1.24791 0.95735 0.97738 1.02394 0.86147 0.78410 0.83021 0.77890 1.21232 1.21538 1.21140 1.19026 0.90451 0.82520 1.43242 0.90618 1.44493 1.02002 0.99716 1.86843 1.21936 0.84665 0.92550 0.98187 1.23051 0.95506 0.98524 1.00352 1.22481 0.98280 0.94068 0.98577 0.90617 1.21416 0.88107 0.92133 0.97254 1.46033 1.36338 1.28954 1.26486 1.20357 0.84588 0.81328 0.85184 1.90801 1.59275 1.67760 1.21487 1.21623 0.98976 0.96276 1.00124 1.21826 1.00379 0.97931 0.92944 0.84916 1.22604 0.93010 1.04087 0.99817 1.20740 0.88295 0.76198 0.82868 1.90822 1.23009 1.45224 1.77182 1.44965 1.17925 1.48110 1.24297 1.20777 0.80502 0.79246 0.88663 1.90928 1.62815 1.31498 1.45181 1.21312 0.93513 0.86015 0.97607 0.93651 0.87548 0.97006 0.91852 0.92126 0.91275 0.91705 0.76586 0.86843 0.88262 0.85763 0.85759 0.74663 0.96540 0.95858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.84 10.09 55.49 0.56 -26.28 16 2 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 3 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.22 -6.24 10.27 -15.06 -0.15 -6.39 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.60 -15.34 3.39 -170.07 -0.58 -15.92 16 10 C 0.15 3.62 5.89 -2.53 -0.01 3.61 16 11 C -0.14 -2.47 6.55 -24.44 -0.16 -2.63 16 12 C -0.11 -1.84 3.03 -88.65 -0.27 -2.11 16 13 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 14 C 0.13 1.91 5.00 -4.04 -0.02 1.89 16 15 N -0.73 -8.34 5.40 -60.30 -0.33 -8.67 16 16 C 0.50 5.75 7.51 -10.98 -0.08 5.67 16 17 O -0.52 -8.16 13.76 -16.71 -0.23 -8.39 16 18 C -0.13 -0.80 5.02 -27.88 -0.14 -0.94 16 19 C -0.11 -0.67 2.69 -90.82 -0.24 -0.92 16 20 H 0.13 0.80 7.96 -51.93 -0.41 0.38 16 21 C -0.16 -0.56 6.67 -26.94 -0.18 -0.74 16 22 C 0.53 3.81 8.55 -11.09 -0.09 3.72 16 23 O -0.49 -5.22 18.02 5.61 0.10 -5.11 16 24 N -0.69 -5.12 5.49 -11.32 -0.06 -5.19 16 25 C 0.52 5.04 7.74 -10.93 -0.08 4.96 16 26 O -0.44 -6.43 15.65 -16.66 -0.26 -6.69 16 27 C 0.14 2.82 6.52 -3.07 -0.02 2.80 16 28 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.11 2.89 5.87 -51.93 -0.30 2.58 16 30 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 1.17 8.05 -51.93 -0.42 0.76 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 1.15 8.06 -51.93 -0.42 0.73 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.40 3.69 8.33 -40.82 -0.34 3.35 16 36 H 0.11 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.12 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.12 0.21 7.74 -51.93 -0.40 -0.19 16 40 H 0.41 2.70 8.96 -40.82 -0.37 2.34 16 41 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.02 0.48 7.76 -51.93 -0.40 0.08 16 LS Contribution 347.61 15.07 5.24 5.24 Total: -1.00 -37.01 347.61 -8.13 -45.14 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -5.99 Total: 0.35 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -1.56 Total: 8.51 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: -0.41 Total: -56.04 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.39 Total: -20.20 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -37.01 -8.13 -45.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753140293.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.025 kcal (2) G-P(sol) polarization free energy of solvation -37.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds