Wall clock time and date at job start Fri Apr 10 2020 17:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00161 * 2 1 4 4 H 1.48504 * 109.47088 * 239.99997 * 3 2 1 5 5 H 1.48494 * 109.47009 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47347 * 119.99967 * 3 2 1 7 7 C 1.38819 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99975 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00094 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64583 * 0.03301 * 9 7 2 11 11 C 1.54914 * 104.82992 * 204.09666 * 10 9 7 12 12 C 1.55405 * 101.66697 * 323.07703 * 11 10 9 13 13 H 1.09000 * 110.69068 * 277.04987 * 12 11 10 14 14 C 1.52995 * 110.85058 * 153.70010 * 12 11 10 15 15 N 1.46500 * 109.46848 * 180.08666 * 14 12 11 16 16 C 1.34783 * 119.99855 * 179.97438 * 15 14 12 17 17 O 1.21281 * 119.99953 * 359.97438 * 16 15 14 18 18 C 1.50697 * 119.99743 * 179.97438 * 16 15 14 19 19 C 1.53008 * 109.46885 * 180.02562 * 18 16 15 20 20 H 1.08995 * 110.53887 * 54.29896 * 19 18 16 21 21 C 1.54225 * 110.60297 * 177.14624 * 19 18 16 22 22 C 1.51316 * 103.55458 * 118.51648 * 21 19 18 23 23 O 1.21223 * 125.40149 * 179.97438 * 22 21 19 24 24 N 1.33874 * 109.20761 * 0.02562 * 22 21 19 25 25 C 1.34228 * 114.52719 * 0.08941 * 24 22 21 26 26 O 1.21225 * 125.59095 * 179.97438 * 25 24 22 27 27 C 1.47018 * 125.64899 * 179.97438 * 9 7 2 28 28 H 0.96998 * 120.00119 * 359.97438 * 1 2 3 29 29 H 1.08999 * 110.36956 * 322.94042 * 10 9 7 30 30 H 1.09001 * 110.36709 * 85.15235 * 10 9 7 31 31 H 1.09000 * 111.00339 * 81.07133 * 11 10 9 32 32 H 1.09001 * 111.00161 * 204.91727 * 11 10 9 33 33 H 1.08999 * 109.47410 * 300.08640 * 14 12 11 34 34 H 1.08997 * 109.47486 * 60.08432 * 14 12 11 35 35 H 0.96999 * 119.99864 * 359.97438 * 15 14 12 36 36 H 1.09003 * 109.47403 * 299.99829 * 18 16 15 37 37 H 1.09002 * 109.47369 * 60.00307 * 18 16 15 38 38 H 1.08995 * 110.60756 * 237.03370 * 21 19 18 39 39 H 1.09002 * 110.61199 * 359.84949 * 21 19 18 40 40 H 0.96998 * 122.76850 * 180.02562 * 24 22 21 41 41 H 1.09002 * 109.88241 * 298.39024 * 27 9 7 42 42 H 1.09000 * 109.88049 * 59.40154 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1415 -2.5332 -0.0007 11 6 -0.4021 -3.9323 0.6112 12 6 0.7808 -4.7551 0.0292 13 1 0.5495 -5.1029 -0.9776 14 6 1.1277 -5.9316 0.9437 15 7 2.2455 -6.6839 0.3686 16 6 2.7259 -7.7698 1.0063 17 8 2.2331 -8.1239 2.0564 18 6 3.8754 -8.5440 0.4145 19 6 4.2225 -9.7206 1.3290 20 1 3.3397 -10.3311 1.5184 21 6 5.3500 -10.5731 0.7123 22 6 6.4673 -10.4715 1.7277 23 8 7.5529 -11.0025 1.6328 24 7 6.0666 -9.7030 2.7480 25 6 4.8170 -9.2273 2.6301 26 8 4.2545 -8.5150 3.4337 27 6 1.9318 -3.7275 0.0005 28 1 -0.4850 0.8400 0.0004 29 1 -0.5998 -1.7587 0.6143 30 1 -0.5266 -2.4851 -1.0193 31 1 -0.3535 -3.8979 1.6996 32 1 -1.3592 -4.3327 0.2769 33 1 1.4101 -5.5564 1.9273 34 1 0.2608 -6.5854 1.0395 35 1 2.6399 -6.4005 -0.4710 36 1 3.5925 -8.9198 -0.5688 37 1 4.7424 -7.8904 0.3179 38 1 5.0291 -11.6084 0.5975 39 1 5.6619 -10.1607 -0.2472 40 1 6.6324 -9.5064 3.5110 41 1 2.5287 -3.8643 -0.9012 42 1 2.5600 -3.8500 0.8828 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753140293.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:38 Heat of formation + Delta-G solvation = -109.842200 kcal Electronic energy + Delta-G solvation = -25190.512390 eV Core-core repulsion = 21363.059300 eV Total energy + Delta-G solvation = -3827.453090 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.78322 -40.64562 -39.61218 -39.12996 -36.94545 -35.97872 -34.49631 -34.23571 -31.70065 -30.29634 -29.22459 -27.29661 -26.18089 -24.88445 -22.69099 -22.32515 -21.84169 -21.23367 -20.72776 -18.97772 -18.84542 -18.11069 -17.58119 -17.30063 -17.02501 -16.67959 -16.45827 -16.26831 -15.66182 -15.47617 -15.23174 -14.98156 -14.70568 -14.28097 -14.24742 -13.88695 -13.53192 -13.50009 -13.37883 -13.13074 -12.91031 -12.75953 -12.62814 -12.16360 -12.05567 -11.86246 -11.81610 -11.67880 -11.55886 -11.36769 -11.35141 -10.99501 -10.74243 -10.66930 -9.94617 -8.87687 -7.77569 -5.21612 0.51960 1.45813 1.48971 1.55333 1.75987 1.81333 1.85170 2.29647 2.49553 3.19835 3.25951 3.31883 3.46469 3.66752 3.74917 3.82917 4.01832 4.05107 4.12775 4.39727 4.49043 4.59511 4.67097 4.69811 4.74251 4.85673 4.87905 4.94324 4.96530 5.07446 5.08265 5.15226 5.39551 5.47040 5.56875 5.67265 5.68141 5.83699 6.32351 6.34408 6.69631 6.89809 7.11340 7.43052 7.79736 8.43050 9.24179 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.021909 B = 0.002574 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.688465 B =10876.742830 C =11575.165759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.068 4.068 3 Si 0.980 3.020 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.280 1.280 7 C -0.241 4.241 8 H 0.079 0.921 9 N -0.629 5.629 10 C 0.152 3.848 11 C -0.124 4.124 12 C -0.092 4.092 13 H 0.101 0.899 14 C 0.147 3.853 15 N -0.722 5.722 16 C 0.493 3.507 17 O -0.565 6.565 18 C -0.122 4.122 19 C -0.103 4.103 20 H 0.138 0.862 21 C -0.135 4.135 22 C 0.532 3.468 23 O -0.527 6.527 24 N -0.685 5.685 25 C 0.519 3.481 26 O -0.499 6.499 27 C 0.138 3.862 28 H 0.247 0.753 29 H 0.068 0.932 30 H -0.007 1.007 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.414 0.586 36 H 0.163 0.837 37 H 0.115 0.885 38 H 0.154 0.846 39 H 0.158 0.842 40 H 0.413 0.587 41 H 0.033 0.967 42 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.296 -24.383 -3.673 26.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.808 3.192 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.370 4.370 8 H 0.097 0.903 9 N -0.356 5.356 10 C 0.027 3.973 11 C -0.163 4.163 12 C -0.111 4.111 13 H 0.120 0.880 14 C 0.022 3.978 15 N -0.375 5.375 16 C 0.280 3.720 17 O -0.444 6.444 18 C -0.161 4.161 19 C -0.124 4.124 20 H 0.156 0.844 21 C -0.173 4.173 22 C 0.322 3.678 23 O -0.401 6.401 24 N -0.350 5.350 25 C 0.308 3.692 26 O -0.370 6.370 27 C 0.013 3.987 28 H 0.057 0.943 29 H 0.086 0.914 30 H 0.011 0.989 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.250 0.750 36 H 0.180 0.820 37 H 0.133 0.867 38 H 0.172 0.828 39 H 0.175 0.825 40 H 0.252 0.748 41 H 0.051 0.949 42 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 8.065 -24.346 -2.682 25.787 hybrid contribution 0.741 1.750 0.581 1.987 sum 8.806 -22.596 -2.101 24.342 Atomic orbital electron populations 1.70049 1.06194 1.25084 1.58581 1.25639 0.96653 1.01008 1.02779 0.85134 0.77139 0.78791 0.78170 1.20166 1.21929 1.20585 1.19417 0.90984 0.83952 1.42609 0.90284 1.44828 1.02862 1.01056 1.86820 1.21729 0.84084 0.94844 0.96689 1.22895 0.98075 0.95626 0.99734 1.22326 0.95376 0.93296 1.00115 0.88046 1.21057 0.89555 0.91757 0.95407 1.45946 1.35689 1.28842 1.26987 1.21330 0.85196 0.80976 0.84460 1.90796 1.61007 1.68938 1.23625 1.21753 0.96996 0.95731 1.01652 1.21889 1.01255 0.98318 0.90983 0.84438 1.22698 0.89785 1.05445 0.99400 1.21383 0.88509 0.74859 0.83030 1.90816 1.24822 1.46598 1.77906 1.45069 1.17528 1.47764 1.24651 1.21481 0.80584 0.77918 0.89264 1.90903 1.64223 1.34401 1.47449 1.21492 0.94840 0.84663 0.97677 0.94334 0.91368 0.98912 0.92513 0.89127 0.94261 0.90788 0.74961 0.81960 0.86719 0.82806 0.82457 0.74824 0.94934 0.96747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.89 10.09 21.65 0.22 -56.67 16 2 C -0.07 -3.90 5.49 84.86 0.47 -3.43 16 3 Si 0.98 45.82 29.55 68.60 2.03 47.84 16 4 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 5 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 7 C -0.24 -13.55 10.27 84.04 0.86 -12.69 16 8 H 0.08 4.26 7.83 -2.91 -0.02 4.23 16 9 N -0.63 -32.24 3.39 -691.97 -2.35 -34.59 16 10 C 0.15 7.40 5.89 86.86 0.51 7.91 16 11 C -0.12 -4.45 6.55 32.08 0.21 -4.24 16 12 C -0.09 -2.77 3.03 -9.52 -0.03 -2.80 16 13 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 14 C 0.15 3.95 5.00 86.38 0.43 4.38 16 15 N -0.72 -14.68 5.40 -463.07 -2.50 -17.18 16 16 C 0.49 10.19 7.51 87.66 0.66 10.85 16 17 O -0.57 -17.46 13.76 18.25 0.25 -17.21 16 18 C -0.12 -0.98 5.02 29.85 0.15 -0.83 16 19 C -0.10 -0.93 2.69 -10.93 -0.03 -0.96 16 20 H 0.14 1.22 7.96 -2.39 -0.02 1.20 16 21 C -0.13 -0.34 6.67 30.46 0.20 -0.14 16 22 C 0.53 6.42 8.55 87.99 0.75 7.17 16 23 O -0.53 -10.38 18.02 -2.86 -0.05 -10.43 16 24 N -0.69 -9.66 5.49 -427.36 -2.34 -12.01 16 25 C 0.52 9.60 7.74 87.94 0.68 10.28 16 26 O -0.50 -15.12 15.65 18.43 0.29 -14.83 16 27 C 0.14 5.37 6.52 86.73 0.57 5.93 16 28 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 29 H 0.07 3.86 5.87 -2.39 -0.01 3.85 16 30 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 31 H 0.06 2.10 8.05 -2.39 -0.02 2.08 16 32 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.04 1.30 8.06 -2.39 -0.02 1.28 16 34 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.41 6.09 8.33 -92.71 -0.77 5.31 16 36 H 0.16 -0.19 8.14 -2.39 -0.02 -0.21 16 37 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.15 -0.35 8.14 -2.39 -0.02 -0.37 16 39 H 0.16 -0.49 7.74 -2.39 -0.02 -0.51 16 40 H 0.41 5.52 8.96 -92.71 -0.83 4.69 16 41 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.01 0.59 7.76 -2.39 -0.02 0.57 16 Total: -1.00 -86.46 347.61 0.43 -86.02 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -0.54 Total: 7.62 kcal Atomic # 6 Polarization: 16.00 SS G_CDS: 5.43 Total: 21.44 kcal Atomic # 7 Polarization: -113.48 SS G_CDS: -6.98 Total: -120.45 kcal Atomic # 8 Polarization: -42.97 SS G_CDS: 0.49 Total: -42.48 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -86.46 0.43 -86.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753140293.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.818 kcal (2) G-P(sol) polarization free energy of solvation -86.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds