Wall clock time and date at job start Fri Apr 10 2020 17:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99835 * 2 1 4 4 H 1.48502 * 109.46778 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47238 * 300.00034 * 3 2 1 6 6 H 1.48503 * 109.46910 * 60.00461 * 3 2 1 7 7 C 1.38811 * 120.00105 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00212 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99997 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00039 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46822 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47362 * 304.99115 * 11 10 9 13 13 O 1.42895 * 109.47283 * 64.99978 * 11 10 9 14 14 C 1.53006 * 109.46623 * 184.99666 * 11 10 9 15 15 N 1.46500 * 109.46998 * 179.97438 * 14 11 10 16 16 C 1.34769 * 120.00237 * 180.02562 * 15 14 11 17 17 O 1.21587 * 120.00170 * 359.97438 * 16 15 14 18 18 C 1.47513 * 120.00217 * 180.02562 * 16 15 14 19 19 O 1.35189 * 127.15561 * 0.02562 * 18 16 15 20 20 N 1.21473 * 111.55857 * 179.97438 * 19 18 16 21 21 C 1.29077 * 111.67997 * 359.90549 * 20 19 18 22 22 C 1.35252 * 127.15252 * 179.70583 * 18 16 15 23 23 C 1.50100 * 131.33682 * 0.39012 * 22 18 16 24 24 C 1.53578 * 108.01460 * 163.70890 * 23 22 18 25 25 C 1.53004 * 109.80306 * 50.04800 * 24 23 22 26 26 C 1.50650 * 130.33240 * 180.41783 * 21 20 19 27 27 H 0.97004 * 119.99993 * 359.97438 * 1 2 3 28 28 H 0.96995 * 119.99933 * 359.97438 * 9 7 2 29 29 H 1.08994 * 109.47386 * 59.99658 * 10 9 7 30 30 H 1.08998 * 109.46411 * 299.99980 * 10 9 7 31 31 H 0.96695 * 114.00385 * 60.00116 * 13 11 10 32 32 H 1.08993 * 109.46955 * 300.00075 * 14 11 10 33 33 H 1.09000 * 109.47050 * 59.99904 * 14 11 10 34 34 H 0.97010 * 119.99909 * 359.97438 * 15 14 11 35 35 H 1.08999 * 109.75842 * 283.33655 * 23 22 18 36 36 H 1.09004 * 109.75520 * 44.03678 * 23 22 18 37 37 H 1.09005 * 109.41735 * 170.14940 * 24 23 22 38 38 H 1.08998 * 109.41720 * 289.93974 * 24 23 22 39 39 H 1.08992 * 109.37981 * 48.42895 * 25 24 23 40 40 H 1.08993 * 109.38001 * 168.21257 * 25 24 23 41 41 H 1.08997 * 109.74401 * 282.81875 * 26 21 20 42 42 H 1.08999 * 109.74507 * 43.52590 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3794 -4.7131 0.8405 13 8 0.3220 -4.8115 -1.2225 14 6 1.8247 -6.1412 0.1245 15 7 0.8727 -7.2547 0.1245 16 6 1.3184 -8.5224 0.2266 17 8 2.5108 -8.7421 0.3184 18 6 0.3599 -9.6437 0.2261 19 8 -0.9865 -9.5668 0.1307 20 7 -1.4994 -10.6676 0.1586 21 6 -0.6164 -11.6025 0.2694 22 6 0.6456 -10.9627 0.3149 23 6 1.9538 -11.6871 0.4442 24 6 1.6589 -13.1207 0.9096 25 6 0.5781 -13.7416 0.0224 26 6 -0.7830 -13.0984 0.3339 27 1 -0.4850 0.8401 0.0004 28 1 0.3556 -2.3881 0.0002 29 1 2.6848 -3.7146 0.8893 30 1 2.6847 -3.7144 -0.8905 31 1 0.8682 -4.9028 -2.0151 32 1 2.5091 -6.2478 -0.7171 33 1 2.3906 -6.1475 1.0560 34 1 -0.0787 -7.0795 0.0517 35 1 2.4594 -11.7099 -0.5212 36 1 2.5832 -11.1831 1.1778 37 1 2.5687 -13.7174 0.8437 38 1 1.3130 -13.1022 1.9430 39 1 0.8313 -13.5773 -1.0249 40 1 0.5214 -14.8125 0.2172 41 1 -1.1205 -13.3887 1.3288 42 1 -1.5109 -13.4203 -0.4109 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753917671.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:40 Heat of formation + Delta-G solvation = -27.948715 kcal Electronic energy + Delta-G solvation = -24837.568616 eV Core-core repulsion = 21013.666694 eV Total energy + Delta-G solvation = -3823.901922 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.25387 -39.90085 -38.17014 -37.66110 -34.59460 -34.05972 -33.23627 -32.71027 -31.37370 -30.38229 -29.07055 -26.02518 -25.19984 -23.59791 -23.47170 -22.25983 -21.50101 -20.57135 -20.07951 -18.46239 -18.01994 -17.18480 -16.70346 -16.14161 -16.02379 -15.67830 -15.35601 -14.85664 -14.68083 -14.48648 -14.34509 -14.14036 -13.70775 -13.56629 -13.03972 -12.99558 -12.88448 -12.77736 -12.40081 -12.12852 -11.91769 -11.44501 -11.41375 -10.98823 -10.96308 -10.84961 -10.70931 -10.54862 -10.25566 -10.16150 -9.84466 -9.81571 -9.57712 -9.29172 -8.93112 -6.96289 -5.78037 -3.08027 0.55769 1.74490 2.35284 2.76479 3.00495 3.42414 3.47796 3.50284 3.51577 4.08132 4.30710 4.39016 4.50951 4.52178 4.59635 4.69005 4.78779 4.83026 4.96315 5.02677 5.10678 5.15743 5.31661 5.36627 5.48747 5.52829 5.55081 5.55880 5.64386 5.67514 5.80563 5.83997 5.88378 6.07803 6.20921 6.46780 6.62718 7.12962 7.67035 7.71851 7.84166 7.90927 8.39869 9.51684 10.07793 10.43239 11.44285 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.042016 B = 0.002180 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.257044 B =12841.217628 C =13350.337526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.726 5.726 10 C 0.128 3.872 11 C 0.088 3.912 12 H 0.107 0.893 13 O -0.551 6.551 14 C 0.088 3.912 15 N -0.703 5.703 16 C 0.604 3.396 17 O -0.514 6.514 18 C -0.079 4.079 19 O 0.103 5.897 20 N -0.332 5.332 21 C 0.014 3.986 22 C -0.121 4.121 23 C -0.049 4.049 24 C -0.122 4.122 25 C -0.119 4.119 26 C -0.041 4.041 27 H 0.255 0.745 28 H 0.389 0.611 29 H 0.029 0.971 30 H 0.024 0.976 31 H 0.374 0.626 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.413 0.587 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.286 -29.433 0.519 29.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.371 5.371 10 C -0.001 4.001 11 C 0.028 3.972 12 H 0.125 0.875 13 O -0.356 6.356 14 C -0.036 4.036 15 N -0.354 5.354 16 C 0.387 3.613 17 O -0.391 6.391 18 C -0.143 4.143 19 O 0.033 5.967 20 N -0.034 5.034 21 C -0.146 4.146 22 C -0.126 4.126 23 C -0.086 4.086 24 C -0.160 4.160 25 C -0.157 4.157 26 C -0.079 4.079 27 H 0.065 0.935 28 H 0.223 0.777 29 H 0.047 0.953 30 H 0.042 0.958 31 H 0.221 0.779 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.249 0.751 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.464 -29.344 0.907 29.362 hybrid contribution 0.808 0.910 -0.320 1.258 sum 1.272 -28.434 0.587 28.468 Atomic orbital electron populations 1.69686 1.05114 1.25612 1.57311 1.24774 0.95547 0.97778 1.02811 0.86103 0.78750 0.84018 0.77211 1.20537 1.21814 1.21824 1.19255 0.91028 0.84054 1.43161 0.91121 1.42246 1.06101 0.99387 1.89365 1.21194 0.93439 0.86531 0.98942 1.22425 0.94709 0.91577 0.88493 0.87492 1.86600 1.37461 1.96200 1.15354 1.22252 0.92037 0.85535 1.03733 1.45828 1.12122 1.04951 1.72545 1.16479 0.85980 0.81149 0.77690 1.90862 1.14110 1.83840 1.50253 1.23443 0.84672 0.96386 1.09791 1.85281 1.17739 1.25359 1.68297 1.73458 1.22510 0.90891 1.16580 1.23435 0.88948 0.98635 1.03604 1.21112 0.98026 0.91299 1.02133 1.20123 0.91126 0.94004 1.03389 1.21689 0.99283 0.95139 0.99878 1.21680 0.93308 1.00002 1.00727 1.20191 0.99116 0.84989 1.03566 0.93488 0.77686 0.95290 0.95832 0.77927 0.90427 0.89787 0.75083 0.89367 0.88843 0.90538 0.91379 0.91128 0.90397 0.89156 0.89474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.25 13.06 55.49 0.72 -27.52 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.11 5.55 -59.91 -0.33 -18.44 16 10 C 0.13 2.38 5.90 -4.04 -0.02 2.36 16 11 C 0.09 1.29 3.09 -26.73 -0.08 1.20 16 12 H 0.11 1.64 8.14 -51.93 -0.42 1.21 16 13 O -0.55 -8.40 13.03 -35.23 -0.46 -8.85 16 14 C 0.09 1.07 5.34 -4.04 -0.02 1.04 16 15 N -0.70 -8.07 5.44 -61.36 -0.33 -8.40 16 16 C 0.60 7.53 7.82 -12.48 -0.10 7.43 16 17 O -0.51 -7.49 15.93 5.29 0.08 -7.40 16 18 C -0.08 -0.92 7.28 -36.87 -0.27 -1.19 16 19 O 0.10 1.24 11.10 13.82 0.15 1.40 16 20 N -0.33 -4.02 12.03 33.15 0.40 -3.62 16 21 C 0.01 0.15 7.21 -82.50 -0.60 -0.45 16 22 C -0.12 -1.27 6.02 -104.71 -0.63 -1.90 16 23 C -0.05 -0.41 5.59 -27.87 -0.16 -0.56 16 24 C -0.12 -0.70 5.87 -26.43 -0.16 -0.85 16 25 C -0.12 -0.60 5.86 -26.35 -0.15 -0.76 16 26 C -0.04 -0.27 6.32 -27.53 -0.17 -0.44 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 28 H 0.39 10.41 7.67 -40.82 -0.31 10.10 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.37 4.64 9.05 45.56 0.41 5.06 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.41 4.41 8.19 -40.82 -0.33 4.08 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.85 7.77 -51.93 -0.40 0.44 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 39 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 40 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 355.23 15.07 5.35 5.35 Total: -1.00 -33.40 355.23 -7.29 -40.69 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -5.25 Total: 10.98 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -2.61 Total: -1.51 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: 0.46 Total: -57.99 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.22 Total: -14.86 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.40 -7.29 -40.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753917671.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.742 kcal (2) G-P(sol) polarization free energy of solvation -33.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds