Wall clock time and date at job start Fri Apr 10 2020 17:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99835 * 2 1 4 4 H 1.48502 * 109.46778 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47238 * 300.00034 * 3 2 1 6 6 H 1.48503 * 109.46910 * 60.00461 * 3 2 1 7 7 C 1.38811 * 120.00105 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00212 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99997 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00039 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46822 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47362 * 304.99115 * 11 10 9 13 13 O 1.42895 * 109.47283 * 64.99978 * 11 10 9 14 14 C 1.53006 * 109.46623 * 184.99666 * 11 10 9 15 15 N 1.46500 * 109.46998 * 179.97438 * 14 11 10 16 16 C 1.34769 * 120.00237 * 180.02562 * 15 14 11 17 17 O 1.21587 * 120.00170 * 359.97438 * 16 15 14 18 18 C 1.47513 * 120.00217 * 180.02562 * 16 15 14 19 19 O 1.35189 * 127.15561 * 0.02562 * 18 16 15 20 20 N 1.21473 * 111.55857 * 179.97438 * 19 18 16 21 21 C 1.29077 * 111.67997 * 359.90549 * 20 19 18 22 22 C 1.35252 * 127.15252 * 179.70583 * 18 16 15 23 23 C 1.50100 * 131.33682 * 0.39012 * 22 18 16 24 24 C 1.53578 * 108.01460 * 163.70890 * 23 22 18 25 25 C 1.53004 * 109.80306 * 50.04800 * 24 23 22 26 26 C 1.50650 * 130.33240 * 180.41783 * 21 20 19 27 27 H 0.97004 * 119.99993 * 359.97438 * 1 2 3 28 28 H 0.96995 * 119.99933 * 359.97438 * 9 7 2 29 29 H 1.08994 * 109.47386 * 59.99658 * 10 9 7 30 30 H 1.08998 * 109.46411 * 299.99980 * 10 9 7 31 31 H 0.96695 * 114.00385 * 60.00116 * 13 11 10 32 32 H 1.08993 * 109.46955 * 300.00075 * 14 11 10 33 33 H 1.09000 * 109.47050 * 59.99904 * 14 11 10 34 34 H 0.97010 * 119.99909 * 359.97438 * 15 14 11 35 35 H 1.08999 * 109.75842 * 283.33655 * 23 22 18 36 36 H 1.09004 * 109.75520 * 44.03678 * 23 22 18 37 37 H 1.09005 * 109.41735 * 170.14940 * 24 23 22 38 38 H 1.08998 * 109.41720 * 289.93974 * 24 23 22 39 39 H 1.08992 * 109.37981 * 48.42895 * 25 24 23 40 40 H 1.08993 * 109.38001 * 168.21257 * 25 24 23 41 41 H 1.08997 * 109.74401 * 282.81875 * 26 21 20 42 42 H 1.08999 * 109.74507 * 43.52590 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3794 -4.7131 0.8405 13 8 0.3220 -4.8115 -1.2225 14 6 1.8247 -6.1412 0.1245 15 7 0.8727 -7.2547 0.1245 16 6 1.3184 -8.5224 0.2266 17 8 2.5108 -8.7421 0.3184 18 6 0.3599 -9.6437 0.2261 19 8 -0.9865 -9.5668 0.1307 20 7 -1.4994 -10.6676 0.1586 21 6 -0.6164 -11.6025 0.2694 22 6 0.6456 -10.9627 0.3149 23 6 1.9538 -11.6871 0.4442 24 6 1.6589 -13.1207 0.9096 25 6 0.5781 -13.7416 0.0224 26 6 -0.7830 -13.0984 0.3339 27 1 -0.4850 0.8401 0.0004 28 1 0.3556 -2.3881 0.0002 29 1 2.6848 -3.7146 0.8893 30 1 2.6847 -3.7144 -0.8905 31 1 0.8682 -4.9028 -2.0151 32 1 2.5091 -6.2478 -0.7171 33 1 2.3906 -6.1475 1.0560 34 1 -0.0787 -7.0795 0.0517 35 1 2.4594 -11.7099 -0.5212 36 1 2.5832 -11.1831 1.1778 37 1 2.5687 -13.7174 0.8437 38 1 1.3130 -13.1022 1.9430 39 1 0.8313 -13.5773 -1.0249 40 1 0.5214 -14.8125 0.2172 41 1 -1.1205 -13.3887 1.3288 42 1 -1.5109 -13.4203 -0.4109 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753917671.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:40 Heat of formation + Delta-G solvation = -53.992050 kcal Electronic energy + Delta-G solvation = -24838.697940 eV Core-core repulsion = 21013.666694 eV Total energy + Delta-G solvation = -3825.031246 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -46.08783 -40.92981 -39.04084 -38.65980 -36.11940 -35.45261 -34.02944 -33.40821 -33.19423 -31.24409 -30.34805 -27.40836 -26.05705 -24.90584 -24.26171 -23.55601 -22.78898 -21.38923 -20.78957 -19.44288 -19.10396 -18.87599 -17.89781 -17.22657 -16.97545 -16.72711 -16.42666 -16.00621 -15.91863 -15.53592 -15.29777 -14.98631 -14.87837 -14.78793 -14.28485 -14.21535 -13.85905 -13.66199 -13.42474 -13.28155 -12.96371 -12.84452 -12.78470 -12.12007 -11.99505 -11.91878 -11.89778 -11.80881 -11.60633 -11.45660 -11.01672 -11.01441 -10.93581 -10.68108 -10.25100 -9.00770 -7.94817 -5.24267 -0.34155 0.95521 1.43443 1.48374 1.48937 1.59081 1.80152 2.06942 2.56153 2.83097 3.31864 3.37671 3.49021 3.55510 3.67787 3.79699 3.93807 3.95389 4.01940 4.20173 4.28595 4.35214 4.40354 4.40498 4.52130 4.61359 4.68709 4.83947 4.88612 4.95354 4.96918 5.07871 5.12803 5.15132 5.22454 5.28192 5.39349 5.49202 6.16156 6.26650 6.75342 6.83710 6.96618 7.33504 8.09294 8.31361 9.28665 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.042016 B = 0.002180 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.257044 B =12841.217628 C =13350.337526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.078 4.078 3 Si 0.975 3.025 4 H -0.264 1.264 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.245 4.245 8 H 0.079 0.921 9 N -0.742 5.742 10 C 0.123 3.877 11 C 0.105 3.895 12 H 0.100 0.900 13 O -0.564 6.564 14 C 0.101 3.899 15 N -0.697 5.697 16 C 0.608 3.392 17 O -0.537 6.537 18 C -0.095 4.095 19 O 0.089 5.911 20 N -0.355 5.355 21 C 0.019 3.981 22 C -0.121 4.121 23 C -0.051 4.051 24 C -0.119 4.119 25 C -0.115 4.115 26 C -0.044 4.044 27 H 0.251 0.749 28 H 0.376 0.624 29 H 0.037 0.963 30 H 0.035 0.965 31 H 0.386 0.614 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.417 0.583 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.452 -31.434 0.509 31.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.271 4.271 3 Si 0.804 3.196 4 H -0.188 1.188 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.377 4.377 8 H 0.097 0.903 9 N -0.385 5.385 10 C -0.004 4.004 11 C 0.045 3.955 12 H 0.118 0.882 13 O -0.371 6.371 14 C -0.023 4.023 15 N -0.348 5.348 16 C 0.392 3.608 17 O -0.415 6.415 18 C -0.159 4.159 19 O 0.022 5.978 20 N -0.061 5.061 21 C -0.142 4.142 22 C -0.126 4.126 23 C -0.089 4.089 24 C -0.156 4.156 25 C -0.153 4.153 26 C -0.081 4.081 27 H 0.060 0.940 28 H 0.208 0.792 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.235 0.765 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.254 0.746 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.113 0.887 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.669 -31.361 0.888 31.418 hybrid contribution 0.468 1.421 -0.326 1.531 sum 2.137 -29.940 0.561 30.022 Atomic orbital electron populations 1.69844 1.06696 1.26000 1.59417 1.25619 0.96415 1.01289 1.03747 0.85049 0.78278 0.79681 0.76588 1.18839 1.22131 1.22115 1.19690 0.91578 0.85261 1.41161 0.90350 1.42453 1.05767 1.00869 1.89365 1.21415 0.94126 0.85464 0.99443 1.22130 0.93661 0.91413 0.88259 0.88234 1.86580 1.38245 1.96210 1.16062 1.22042 0.91637 0.84227 1.04374 1.45736 1.12265 1.04633 1.72136 1.16494 0.85775 0.81344 0.77168 1.90845 1.14984 1.84201 1.51487 1.23404 0.84694 0.96733 1.11082 1.85252 1.17802 1.25661 1.69085 1.73444 1.23358 0.91327 1.17938 1.24073 0.88303 1.00099 1.01750 1.21530 0.99207 0.91009 1.00811 1.20240 0.89841 0.95477 1.03306 1.21705 1.00492 0.93478 0.99922 1.21699 0.91924 1.01268 1.00375 1.20453 1.00503 0.82468 1.04709 0.94041 0.79204 0.94466 0.94757 0.76492 0.89537 0.89340 0.74586 0.89103 0.89873 0.88652 0.91280 0.91364 0.87782 0.87769 0.88540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.88 13.06 21.65 0.28 -59.60 16 2 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 3 Si 0.97 46.10 29.55 68.60 2.03 48.12 16 4 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 7 C -0.25 -13.56 9.99 84.03 0.84 -12.72 16 8 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 9 N -0.74 -36.96 5.55 -343.45 -1.91 -38.87 16 10 C 0.12 4.46 5.90 86.38 0.51 4.97 16 11 C 0.11 3.00 3.09 30.60 0.09 3.09 16 12 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 13 O -0.56 -16.82 13.03 -148.98 -1.94 -18.76 16 14 C 0.10 2.32 5.34 86.38 0.46 2.78 16 15 N -0.70 -15.57 5.44 -466.30 -2.54 -18.11 16 16 C 0.61 14.97 7.82 86.69 0.68 15.64 16 17 O -0.54 -15.36 15.93 -3.99 -0.06 -15.43 16 18 C -0.10 -2.22 7.28 24.03 0.17 -2.05 16 19 O 0.09 2.17 11.10 59.47 0.66 2.83 16 20 N -0.36 -8.53 12.03 -50.85 -0.61 -9.14 16 21 C 0.02 0.36 7.21 43.77 0.32 0.67 16 22 C -0.12 -2.45 6.02 -19.92 -0.12 -2.57 16 23 C -0.05 -0.79 5.59 29.85 0.17 -0.62 16 24 C -0.12 -1.06 5.87 30.79 0.18 -0.88 16 25 C -0.11 -0.83 5.86 30.84 0.18 -0.64 16 26 C -0.04 -0.47 6.32 30.08 0.19 -0.28 16 27 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 28 H 0.38 20.44 7.67 -92.71 -0.71 19.73 16 29 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.39 9.19 9.05 -74.06 -0.67 8.52 16 32 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.42 8.80 8.19 -92.70 -0.76 8.04 16 35 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.08 1.46 7.77 -2.39 -0.02 1.44 16 37 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 38 H 0.07 0.62 8.10 -2.39 -0.02 0.60 16 39 H 0.07 0.55 8.10 -2.39 -0.02 0.53 16 40 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 41 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -71.59 355.23 -1.02 -72.61 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: -1.06 Total: 32.98 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 4.14 Total: 3.36 kcal Atomic # 7 Polarization: -120.94 SS G_CDS: -4.77 Total: -125.72 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -1.34 Total: -31.36 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.12 kcal Total: -71.59 -1.02 -72.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753917671.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.620 kcal (2) G-P(sol) polarization free energy of solvation -71.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds