Wall clock time and date at job start Fri Apr 10 2020 17:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99936 * 2 1 4 4 H 1.48497 * 109.47340 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47124 * 299.99602 * 3 2 1 6 6 H 1.48504 * 109.47350 * 59.99468 * 3 2 1 7 7 C 1.38814 * 120.00225 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00061 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99848 * 0.02562 * 7 2 1 10 10 C 1.46488 * 119.99804 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47240 * 184.93554 * 10 9 7 12 12 H 1.09002 * 109.99695 * 54.21768 * 11 10 9 13 13 C 1.54329 * 109.98836 * 293.18225 * 11 10 9 14 14 C 1.55155 * 103.02101 * 218.66054 * 13 11 10 15 15 C 1.54914 * 101.57955 * 35.30733 * 14 13 11 16 16 N 1.47021 * 109.88518 * 175.31212 * 11 10 9 17 17 C 1.34773 * 125.64930 * 298.39427 * 16 11 10 18 18 O 1.21284 * 120.00050 * 354.65904 * 17 16 11 19 19 C 1.50699 * 119.99870 * 174.65174 * 17 16 11 20 20 N 1.46502 * 109.47018 * 180.02562 * 19 17 16 21 21 C 1.33877 * 122.76498 * 90.00179 * 20 19 17 22 22 O 1.21220 * 125.39579 * 0.02562 * 21 20 19 23 23 C 1.51322 * 109.20541 * 180.02562 * 21 20 19 24 24 C 1.54228 * 103.69519 * 359.91776 * 23 21 20 25 25 C 1.33884 * 122.75987 * 269.99882 * 20 19 17 26 26 O 1.21224 * 125.39735 * 0.02562 * 25 20 19 27 27 H 0.97003 * 120.00365 * 0.02562 * 1 2 3 28 28 H 0.97004 * 119.99754 * 0.02562 * 9 7 2 29 29 H 1.08997 * 109.47819 * 64.93513 * 10 9 7 30 30 H 1.09002 * 109.47691 * 304.93252 * 10 9 7 31 31 H 1.09002 * 110.85373 * 100.19879 * 13 11 10 32 32 H 1.08999 * 110.52041 * 336.97364 * 13 11 10 33 33 H 1.08999 * 111.01097 * 277.23513 * 14 13 11 34 34 H 1.08997 * 111.00746 * 153.37869 * 14 13 11 35 35 H 1.09010 * 110.36734 * 204.15051 * 15 14 13 36 36 H 1.08999 * 110.45607 * 81.88001 * 15 14 13 37 37 H 1.08997 * 109.47591 * 60.00049 * 19 17 16 38 38 H 1.09000 * 109.47282 * 300.00060 * 19 17 16 39 39 H 1.08996 * 110.60336 * 118.51554 * 23 21 20 40 40 H 1.09000 * 110.59913 * 241.32368 * 23 21 20 41 41 H 1.08995 * 110.60526 * 118.59409 * 24 23 21 42 42 H 1.08997 * 110.60828 * 241.56251 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6567 0.0017 11 6 1.0686 -4.8171 -0.1227 12 1 0.4355 -4.6749 -0.9985 13 6 0.1938 -4.9026 1.1458 14 6 0.0576 -6.4312 1.3741 15 6 1.4475 -6.9391 0.9157 16 7 1.7996 -6.0877 -0.2352 17 6 2.6545 -6.4173 -1.2236 18 8 2.8011 -5.6747 -2.1713 19 6 3.4285 -7.7083 -1.1511 20 7 4.2818 -7.8332 -2.3354 21 6 5.5357 -7.3659 -2.3775 22 8 6.1045 -6.7990 -1.4695 23 6 6.1302 -7.6575 -3.7381 24 6 4.9933 -8.3842 -4.4852 25 6 3.8719 -8.4242 -3.4646 26 8 2.7777 -8.9142 -3.6435 27 1 -0.4851 0.8400 -0.0004 28 1 0.3556 -2.3881 -0.0002 29 1 2.6161 -3.7533 0.9330 30 1 2.7501 -3.6776 -0.8403 31 1 -0.7829 -4.4499 0.9748 32 1 0.6967 -4.4300 1.9894 33 1 -0.7352 -6.8499 0.7543 34 1 -0.1123 -6.6554 2.4272 35 1 1.3879 -7.9839 0.6105 36 1 2.1794 -6.8191 1.7144 37 1 2.7334 -8.5471 -1.1137 38 1 4.0488 -7.7103 -0.2549 39 1 6.3935 -6.7309 -4.2482 40 1 7.0027 -8.3041 -3.6448 41 1 4.6912 -7.8192 -5.3669 42 1 5.2993 -9.3933 -4.7612 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754621855.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:49 Heat of formation + Delta-G solvation = -74.747409 kcal Electronic energy + Delta-G solvation = -26094.201724 eV Core-core repulsion = 22268.270459 eV Total energy + Delta-G solvation = -3825.931265 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.15332 -39.95020 -38.76439 -37.44236 -36.00286 -34.52639 -33.70580 -31.78488 -31.32161 -29.00020 -27.86651 -26.43892 -25.08268 -23.29625 -22.64591 -22.08254 -21.12200 -19.80413 -18.94683 -17.86107 -17.41759 -17.00001 -16.78004 -16.53525 -16.22715 -15.18223 -14.83286 -14.53941 -14.43249 -14.40433 -14.15129 -13.92077 -13.69600 -13.37914 -13.19472 -13.04486 -12.80982 -12.70796 -12.38082 -12.24137 -11.69829 -11.54203 -11.21449 -10.92187 -10.89887 -10.82149 -10.58334 -10.55234 -10.37658 -10.28383 -9.98618 -9.72835 -9.51795 -8.82315 -8.50821 -6.87216 -5.71832 -3.00045 1.30520 2.04441 2.48072 2.61181 3.07403 3.47445 3.53249 3.55984 3.77273 3.91355 4.11690 4.30542 4.53456 4.56263 4.66267 4.71407 4.88270 4.91534 4.98699 5.10134 5.10229 5.27473 5.29944 5.35885 5.39825 5.55948 5.62814 5.79298 5.91598 6.02247 6.06066 6.16818 6.41750 6.51780 6.52332 6.83550 6.97264 7.06766 7.47906 7.58852 7.77046 8.17016 8.47088 9.58257 10.14175 10.50203 11.51329 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.014434 B = 0.003783 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.457273 B = 7399.157120 C = 8626.579684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.234 4.234 8 H 0.070 0.930 9 N -0.728 5.728 10 C 0.148 3.852 11 C 0.131 3.869 12 H 0.078 0.922 13 C -0.121 4.121 14 C -0.133 4.133 15 C 0.095 3.905 16 N -0.608 5.608 17 C 0.515 3.485 18 O -0.521 6.521 19 C 0.084 3.916 20 N -0.559 5.559 21 C 0.530 3.470 22 O -0.475 6.475 23 C -0.154 4.154 24 C -0.152 4.152 25 C 0.531 3.469 26 O -0.482 6.482 27 H 0.254 0.746 28 H 0.383 0.617 29 H 0.016 0.984 30 H 0.034 0.966 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.998 -23.974 -2.911 25.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.365 4.365 8 H 0.088 0.912 9 N -0.372 5.372 10 C 0.019 3.981 11 C 0.028 3.972 12 H 0.096 0.904 13 C -0.159 4.159 14 C -0.171 4.171 15 C -0.028 4.028 16 N -0.344 5.344 17 C 0.301 3.699 18 O -0.396 6.396 19 C -0.041 4.041 20 N -0.302 5.302 21 C 0.319 3.681 22 O -0.346 6.346 23 C -0.194 4.194 24 C -0.192 4.192 25 C 0.321 3.679 26 O -0.353 6.353 27 H 0.064 0.936 28 H 0.217 0.783 29 H 0.034 0.966 30 H 0.052 0.948 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.994 -23.435 -3.083 24.952 hybrid contribution 0.029 1.029 0.131 1.038 sum 8.022 -22.406 -2.952 23.981 Atomic orbital electron populations 1.69668 1.05066 1.25467 1.58186 1.24716 0.95544 0.97606 1.03142 0.86102 0.78848 0.84062 0.77144 1.20558 1.21858 1.21862 1.19275 0.91078 0.83997 1.42156 0.91213 1.42202 1.05746 0.99696 1.89586 1.20916 0.93571 0.85208 0.98360 1.21863 0.93477 0.83132 0.98717 0.90435 1.22686 1.00684 0.95058 0.97521 1.22786 0.95809 0.96607 1.01875 1.22410 0.97330 0.94378 0.88636 1.48463 1.44148 1.18075 1.23697 1.20220 0.79759 0.87799 0.82129 1.90769 1.64670 1.52179 1.31946 1.21554 0.95279 0.98134 0.89132 1.46329 1.15400 1.53139 1.15339 1.20838 0.80581 0.76128 0.90523 1.90806 1.64342 1.37353 1.42089 1.22453 0.99633 1.04595 0.92723 1.22508 0.93063 1.04725 0.98913 1.20926 0.88768 0.75380 0.82863 1.90776 1.22208 1.42946 1.79365 0.93619 0.78300 0.96638 0.94827 0.89617 0.89810 0.90675 0.89785 0.90824 0.90953 0.86156 0.85931 0.85849 0.86095 0.85911 0.86108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.99 13.06 55.49 0.72 -28.27 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 23.32 29.55 -169.99 -5.02 18.29 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 6 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 7 C -0.23 -6.94 9.99 -15.06 -0.15 -7.09 16 8 H 0.07 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.73 -19.57 5.45 -59.91 -0.33 -19.89 16 10 C 0.15 3.36 5.65 -4.05 -0.02 3.34 16 11 C 0.13 2.36 2.92 -66.95 -0.20 2.17 16 12 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 13 C -0.12 -1.78 6.09 -24.89 -0.15 -1.93 16 14 C -0.13 -1.37 7.09 -24.58 -0.17 -1.55 16 15 C 0.10 0.99 6.65 -2.53 -0.02 0.97 16 16 N -0.61 -9.22 3.06 -163.01 -0.50 -9.72 16 17 C 0.51 8.43 7.64 -10.99 -0.08 8.34 16 18 O -0.52 -10.89 15.62 5.55 0.09 -10.81 16 19 C 0.08 0.98 5.12 -5.19 -0.03 0.95 16 20 N -0.56 -6.52 2.04 -116.47 -0.24 -6.76 16 21 C 0.53 6.04 8.08 -11.08 -0.09 5.95 16 22 O -0.48 -7.18 17.48 5.61 0.10 -7.08 16 23 C -0.15 -0.94 7.02 -26.94 -0.19 -1.13 16 24 C -0.15 -0.89 7.05 -26.76 -0.19 -1.07 16 25 C 0.53 5.79 8.09 -10.90 -0.09 5.70 16 26 O -0.48 -6.78 17.48 5.61 0.10 -6.69 16 27 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.38 10.53 7.45 -40.82 -0.30 10.23 16 29 H 0.02 0.36 8.03 -51.93 -0.42 -0.06 16 30 H 0.03 0.86 6.90 -51.93 -0.36 0.50 16 31 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.08 1.31 7.77 -51.93 -0.40 0.91 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.56 7.51 -51.92 -0.39 0.17 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.12 1.12 7.45 -51.93 -0.39 0.73 16 38 H 0.12 1.22 7.83 -51.93 -0.41 0.81 16 39 H 0.12 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.12 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 354.31 15.07 5.34 5.34 Total: -1.00 -39.64 354.31 -7.23 -46.87 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.02 Total: 4.57 kcal Atomic # 6 Polarization: 15.60 SS G_CDS: -1.47 Total: 14.13 kcal Atomic # 7 Polarization: -64.29 SS G_CDS: -0.34 Total: -64.63 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: 0.28 Total: -24.57 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -5.02 Total: 18.29 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -39.64 -7.23 -46.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754621855.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.875 kcal (2) G-P(sol) polarization free energy of solvation -39.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds