Wall clock time and date at job start Fri Apr 10 2020 17:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.47433 * 2 1 4 4 N 1.33694 * 126.26885 * 89.97854 * 3 2 1 5 5 C 1.30616 * 108.99186 * 180.02562 * 4 3 2 6 6 O 1.33664 * 109.16008 * 359.97438 * 5 4 3 7 7 C 1.35346 * 107.67916 * 0.02562 * 6 5 4 8 8 C 1.46724 * 126.64439 * 179.97438 * 7 6 5 9 9 O 1.21677 * 120.00208 * 180.02562 * 8 7 6 10 10 N 1.34776 * 119.99845 * 0.02562 * 8 7 6 11 11 C 1.46503 * 120.00077 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.47018 * 179.97438 * 11 10 8 13 13 O 1.42893 * 110.64164 * 66.69013 * 12 11 10 14 14 C 1.55161 * 110.71746 * 190.02232 * 12 11 10 15 15 C 1.54905 * 101.57998 * 153.86560 * 14 12 11 16 16 N 1.47425 * 104.83403 * 322.99050 * 15 14 12 17 17 C 1.36933 * 125.65028 * 204.16187 * 16 15 14 18 18 H 1.08007 * 120.00443 * 179.97438 * 17 16 15 19 19 C 1.38819 * 120.00302 * 359.95969 * 17 16 15 20 20 N 1.31618 * 119.99262 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00147 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46893 * 60.00331 * 21 19 17 23 23 H 1.48506 * 109.46763 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47322 * 300.00107 * 21 19 17 25 25 C 1.47027 * 108.70096 * 24.12937 * 16 15 14 26 26 H 1.09002 * 109.47818 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47151 * 299.99809 * 1 2 3 28 28 H 1.09010 * 109.47199 * 59.99462 * 1 2 3 29 29 H 1.09000 * 109.47151 * 240.00191 * 2 1 3 30 30 H 1.08998 * 109.47057 * 120.00184 * 2 1 3 31 31 H 1.08006 * 125.42506 * 179.97438 * 5 4 3 32 32 H 0.96998 * 120.00195 * 359.97438 * 10 8 7 33 33 H 1.08994 * 109.46757 * 299.99972 * 11 10 8 34 34 H 1.09003 * 109.47026 * 59.99376 * 11 10 8 35 35 H 0.96705 * 113.99941 * 300.70360 * 13 12 11 36 36 H 1.08997 * 111.00314 * 271.94022 * 14 12 11 37 37 H 1.09007 * 111.00069 * 35.79597 * 14 12 11 38 38 H 1.09004 * 110.36836 * 204.15570 * 15 14 12 39 39 H 1.08995 * 110.36723 * 81.82678 * 15 14 12 40 40 H 0.97006 * 119.99480 * 180.02562 * 20 19 17 41 41 H 1.09002 * 109.87777 * 239.52088 * 25 16 15 42 42 H 1.09004 * 109.87984 * 118.35749 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2957 2.1666 1.0779 5 6 2.7111 3.3426 0.6900 6 8 2.7264 3.3837 -0.6459 7 6 2.3015 2.1813 -1.0991 8 6 2.1580 1.7749 -2.5016 9 8 1.7624 0.6568 -2.7737 10 7 2.4644 2.6400 -3.4886 11 6 2.3206 2.2344 -4.8890 12 6 2.7304 3.3933 -5.8002 13 8 4.1282 3.6623 -5.6753 14 6 2.3552 3.0909 -7.2751 15 6 2.1973 4.5188 -7.8547 16 7 1.5848 5.3023 -6.7664 17 6 0.8436 6.4429 -6.9236 18 1 0.4358 6.9455 -6.0589 19 6 0.6164 6.9535 -8.1943 20 7 1.1131 6.3409 -9.2480 21 14 -0.3953 8.5090 -8.4087 22 1 0.2582 9.6283 -7.6839 23 1 -0.4907 8.8423 -9.8527 24 1 -1.7582 8.2927 -7.8601 25 6 1.9010 4.6557 -5.4843 26 1 -0.3635 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5140 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.9968 4.1529 1.3445 32 1 2.7794 3.5314 -3.2718 33 1 2.9599 1.3738 -5.0854 34 1 1.2821 1.9679 -5.0853 35 1 4.4054 3.8951 -4.7786 36 1 3.1567 2.5510 -7.7793 37 1 1.4169 2.5392 -7.3343 38 1 1.5428 4.5042 -8.7263 39 1 3.1713 4.9314 -8.1174 40 1 0.9547 6.6979 -10.1360 41 1 0.9798 4.3759 -4.9732 42 1 2.4823 5.3346 -4.8603 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754758126.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:57 Heat of formation + Delta-G solvation = -35.050462 kcal Electronic energy + Delta-G solvation = -25871.906300 eV Core-core repulsion = 22047.696423 eV Total energy + Delta-G solvation = -3824.209877 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.74003 -39.95589 -38.51636 -36.08277 -35.17187 -34.29039 -33.20173 -32.14767 -30.35412 -29.49207 -28.17003 -25.96719 -24.76229 -23.93106 -23.33713 -21.61260 -20.89215 -20.15050 -19.96484 -18.67888 -17.17898 -17.00492 -16.96305 -16.38952 -15.88035 -15.32962 -15.08600 -14.77866 -14.49343 -14.22219 -14.11124 -13.80205 -13.61729 -13.30264 -13.01710 -12.94326 -12.36540 -12.14824 -11.76918 -11.63616 -11.41556 -11.30636 -11.14907 -11.08486 -10.89791 -10.83672 -10.49841 -10.30127 -10.20815 -9.94431 -9.76377 -9.50218 -9.43486 -9.10029 -8.69000 -6.90778 -5.70311 -3.12963 0.54582 2.13430 2.17426 2.86301 2.97334 3.37303 3.41387 3.43002 3.71486 4.36946 4.39480 4.41439 4.48713 4.77424 5.03749 5.10095 5.11749 5.18427 5.24157 5.30611 5.44243 5.45543 5.56450 5.73660 5.77756 5.82534 5.88121 5.96468 6.06057 6.14873 6.18647 6.34615 6.44347 6.53281 6.55871 7.06531 7.31637 7.51417 7.56088 7.79015 7.82253 7.87423 8.29949 9.15936 9.76247 10.40301 11.33374 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.019299 B = 0.003178 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.501412 B = 8807.517026 C = 9301.615957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.052 4.052 3 C 0.082 3.918 4 N -0.493 5.493 5 C 0.202 3.798 6 O -0.190 6.190 7 C -0.112 4.112 8 C 0.608 3.392 9 O -0.512 6.512 10 N -0.713 5.713 11 C 0.103 3.897 12 C 0.105 3.895 13 O -0.543 6.543 14 C -0.127 4.127 15 C 0.156 3.844 16 N -0.599 5.599 17 C -0.228 4.228 18 H 0.076 0.924 19 C -0.008 4.008 20 N -0.920 5.920 21 Si 0.916 3.084 22 H -0.285 1.285 23 H -0.289 1.289 24 H -0.285 1.285 25 C 0.116 3.884 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.257 0.743 32 H 0.404 0.596 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.365 0.635 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.109 0.891 39 H 0.019 0.981 40 H 0.254 0.746 41 H 0.030 0.970 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.738 -9.602 17.526 20.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.090 4.090 3 C -0.041 4.041 4 N -0.222 5.222 5 C -0.023 4.023 6 O -0.076 6.076 7 C -0.167 4.167 8 C 0.393 3.607 9 O -0.389 6.389 10 N -0.364 5.364 11 C -0.020 4.020 12 C 0.063 3.937 13 O -0.347 6.347 14 C -0.166 4.166 15 C 0.031 3.969 16 N -0.325 5.325 17 C -0.356 4.356 18 H 0.094 0.906 19 C -0.204 4.204 20 N -0.568 5.568 21 Si 0.746 3.254 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.211 1.211 25 C -0.011 4.011 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.119 0.881 30 H 0.099 0.901 31 H 0.272 0.728 32 H 0.240 0.760 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.211 0.789 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.126 0.874 39 H 0.037 0.963 40 H 0.065 0.935 41 H 0.048 0.952 42 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 3.319 -10.505 17.044 20.294 hybrid contribution -0.117 1.948 0.229 1.965 sum 3.202 -8.557 17.272 19.540 Atomic orbital electron populations 1.21643 0.93689 1.02362 1.02111 1.20172 0.96751 0.87681 1.04392 1.22076 0.97513 0.98251 0.86310 1.70352 1.17094 1.03287 1.31424 1.28363 0.96990 0.97549 0.79406 1.84511 1.64607 1.33935 1.24503 1.22962 1.12172 0.85267 0.96336 1.16284 0.78234 0.84884 0.81279 1.90866 1.46680 1.19541 1.81823 1.45933 1.66950 1.16936 1.06621 1.22234 1.03124 0.98417 0.78247 1.22573 0.81298 0.92828 0.96996 1.86631 1.23125 1.91478 1.33452 1.23063 1.00402 1.01827 0.91336 1.21953 0.97608 0.84126 0.93194 1.44400 1.60464 1.27992 0.99677 1.19010 1.24230 0.99589 0.92771 0.90588 1.24798 1.00804 0.99467 0.95363 1.69778 1.49117 1.40214 0.97718 0.86132 0.79834 0.82534 0.76851 1.21186 1.21471 1.21109 1.21919 0.96061 0.92005 0.91132 0.91610 0.92725 0.92257 0.88138 0.90076 0.72757 0.76044 0.90120 0.89736 0.78897 0.90950 0.90478 0.87352 0.96336 0.93542 0.95188 0.95936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.89 37.16 0.37 -1.01 16 2 C -0.05 -0.54 5.92 -27.89 -0.17 -0.71 16 3 C 0.08 0.97 6.41 -82.47 -0.53 0.44 16 4 N -0.49 -5.35 11.26 -10.88 -0.12 -5.47 16 5 C 0.20 1.62 13.21 52.25 0.69 2.31 16 6 O -0.19 -1.93 10.57 4.42 0.05 -1.88 16 7 C -0.11 -1.35 7.18 -36.84 -0.26 -1.62 16 8 C 0.61 8.10 7.79 -12.83 -0.10 8.00 16 9 O -0.51 -7.80 14.79 5.21 0.08 -7.73 16 10 N -0.71 -8.88 5.13 -61.60 -0.32 -9.19 16 11 C 0.10 1.44 4.80 -4.04 -0.02 1.42 16 12 C 0.10 1.74 0.93 -88.79 -0.08 1.65 16 13 O -0.54 -8.80 13.10 -35.23 -0.46 -9.26 16 14 C -0.13 -2.37 6.26 -24.58 -0.15 -2.53 16 15 C 0.16 3.77 5.88 -2.53 -0.01 3.75 16 16 N -0.60 -15.11 3.39 -170.07 -0.58 -15.69 16 17 C -0.23 -6.28 10.27 -15.06 -0.15 -6.44 16 18 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 19 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 20 N -0.92 -26.57 10.09 55.49 0.56 -26.01 16 21 Si 0.92 21.82 29.55 -169.99 -5.02 16.80 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.12 2.28 5.76 -3.07 -0.02 2.27 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 29 H 0.10 1.13 6.47 -51.93 -0.34 0.79 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.26 0.64 8.06 -52.48 -0.42 0.22 16 32 H 0.40 4.50 7.27 -40.82 -0.30 4.21 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.23 8.03 -51.93 -0.42 0.82 16 35 H 0.36 4.43 8.44 45.56 0.38 4.81 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.08 1.35 7.96 -51.93 -0.41 0.94 16 38 H 0.11 2.92 5.87 -51.93 -0.30 2.61 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.03 0.59 7.82 -51.93 -0.41 0.19 16 42 H 0.02 0.44 8.07 -51.93 -0.42 0.02 16 LS Contribution 350.13 15.07 5.28 5.28 Total: -1.00 -33.51 350.13 -6.22 -39.73 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.14 Total: 6.22 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: -0.54 Total: 7.21 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: -0.46 Total: -56.37 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.34 Total: -18.87 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.51 -6.22 -39.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754758126.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.679 kcal (2) G-P(sol) polarization free energy of solvation -33.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds