Wall clock time and date at job start Fri Apr 10 2020 18:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30262 * 125.61954 * 2 1 4 4 C 1.34478 * 108.69823 * 180.18878 * 3 2 1 5 5 C 1.34330 * 107.67101 * 359.56422 * 4 3 2 6 6 C 1.50703 * 126.44424 * 180.24387 * 5 4 3 7 7 C 1.50700 * 109.47152 * 89.99817 * 6 5 4 8 8 O 1.21274 * 120.00022 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99877 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00265 * 179.97438 * 9 7 6 11 11 C 1.52993 * 109.47582 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.67876 * 300.09464 * 11 10 9 13 13 C 1.53294 * 109.68475 * 179.53523 * 11 10 9 14 14 O 1.42967 * 109.22237 * 187.97228 * 13 11 10 15 15 C 1.42961 * 114.16327 * 62.58831 * 14 13 11 16 16 C 1.53293 * 109.22052 * 297.41265 * 15 14 13 17 17 N 1.47150 * 109.68027 * 60.60943 * 11 10 9 18 18 C 1.36937 * 120.98664 * 350.23679 * 17 11 10 19 19 H 1.07999 * 119.99436 * 31.20384 * 18 17 11 20 20 C 1.38809 * 120.00671 * 211.20674 * 18 17 11 21 21 N 1.31623 * 119.99532 * 10.72787 * 20 18 17 22 22 Si 1.86794 * 120.00207 * 190.72704 * 20 18 17 23 23 H 1.48499 * 109.47014 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47039 * 119.99865 * 22 20 18 25 25 H 1.48500 * 109.46912 * 239.99895 * 22 20 18 26 26 O 1.33968 * 125.61947 * 179.70647 * 2 1 3 27 27 H 1.08999 * 109.47105 * 270.29093 * 1 2 3 28 28 H 1.08998 * 109.46894 * 30.28886 * 1 2 3 29 29 H 1.08996 * 109.47146 * 150.29189 * 1 2 3 30 30 H 1.08004 * 126.16578 * 179.82519 * 4 3 2 31 31 H 1.09007 * 109.46733 * 209.99942 * 6 5 4 32 32 H 1.08997 * 109.46975 * 329.99241 * 6 5 4 33 33 H 0.97005 * 119.99638 * 0.02562 * 9 7 6 34 34 H 1.09000 * 109.47252 * 300.00416 * 10 9 7 35 35 H 1.09005 * 109.47042 * 60.00076 * 10 9 7 36 36 H 1.08998 * 109.51522 * 307.90144 * 13 11 10 37 37 H 1.09006 * 109.50969 * 68.05228 * 13 11 10 38 38 H 1.08997 * 109.51059 * 177.49558 * 15 14 13 39 39 H 1.08996 * 109.55915 * 57.36662 * 15 14 13 40 40 H 1.09001 * 109.68208 * 292.58300 * 16 15 14 41 41 H 1.08999 * 109.68108 * 172.03147 * 16 15 14 42 42 H 0.96999 * 119.99797 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6675 -0.0042 5 6 3.5698 -0.6757 0.0029 6 6 4.7937 -1.5549 0.0068 7 6 5.2026 -1.8404 1.4289 8 8 4.5629 -1.3761 2.3486 9 7 6.2786 -2.6126 1.6785 10 6 6.6765 -2.8898 3.0609 11 6 7.9190 -3.7825 3.0648 12 1 7.6985 -4.7208 2.5557 13 6 8.3465 -4.0661 4.5094 14 8 9.6067 -4.7412 4.5034 15 6 10.6764 -3.9787 3.9393 16 6 10.3683 -3.6906 2.4656 17 7 9.0253 -3.0952 2.3800 18 6 8.8113 -1.9359 1.6831 19 1 8.0387 -1.2507 1.9992 20 6 9.5874 -1.6415 0.5705 21 7 10.3791 -2.5601 0.0587 22 14 9.5081 0.0581 -0.2004 23 1 8.5494 0.9013 0.5580 24 1 10.8548 0.6828 -0.1609 25 1 9.0576 -0.0586 -1.6106 26 8 2.2872 -1.0890 0.0056 27 1 -0.3633 0.0052 1.0276 28 1 -0.3633 0.8874 -0.5183 29 1 -0.3633 -0.8926 -0.5093 30 1 4.4157 1.3162 -0.0079 31 1 4.5691 -2.4925 -0.5020 32 1 5.6076 -1.0469 -0.5104 33 1 6.7901 -2.9843 0.9428 34 1 6.9017 -1.9522 3.5691 35 1 5.8624 -3.3973 3.5785 36 1 8.4396 -3.1258 5.0528 37 1 7.5990 -4.6947 4.9935 38 1 11.6051 -4.5444 4.0132 39 1 10.7790 -3.0381 4.4805 40 1 10.3948 -4.6199 1.8965 41 1 11.1050 -2.9938 2.0659 42 1 10.9217 -2.3543 -0.7185 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754968693.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:01 Heat of formation + Delta-G solvation = -52.705886 kcal Electronic energy + Delta-G solvation = -26205.670493 eV Core-core repulsion = 22380.695020 eV Total energy + Delta-G solvation = -3824.975473 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.35546 -40.87797 -39.87709 -36.97695 -35.79637 -35.30711 -34.21258 -33.26204 -32.21229 -31.24933 -29.00307 -27.65194 -26.21581 -25.22547 -23.62621 -23.21938 -22.22789 -21.48694 -21.17341 -18.90756 -18.13927 -18.04472 -17.58091 -17.37962 -17.15592 -16.50940 -16.36349 -16.20531 -15.70958 -15.42464 -15.32077 -14.96469 -14.92070 -14.57592 -14.29755 -14.06116 -13.81522 -13.66291 -13.29225 -13.20611 -13.00786 -12.83702 -12.71675 -12.47244 -12.31729 -12.09425 -12.00180 -11.85268 -11.63214 -11.31018 -11.09867 -10.65070 -10.55645 -9.89724 -9.70115 -8.61142 -7.85011 -5.36758 0.37567 1.42122 1.51025 1.54840 1.56450 1.63152 1.67428 2.38084 2.48678 3.03654 3.13465 3.31315 3.44727 3.61666 3.89187 4.01304 4.04367 4.11176 4.22480 4.34240 4.35919 4.47637 4.59521 4.63068 4.63781 4.65718 4.66095 4.67417 4.75652 4.96389 5.00430 5.01446 5.12015 5.31029 5.37665 5.53450 5.64128 5.71339 6.30121 6.38541 6.64235 6.67666 7.11972 7.26930 7.77798 8.34658 9.19450 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.016536 B = 0.004127 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.833202 B = 6783.210892 C = 8103.594438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.184 3.816 3 N -0.515 5.515 4 C -0.046 4.046 5 C -0.031 4.031 6 C -0.052 4.052 7 C 0.510 3.490 8 O -0.590 6.590 9 N -0.690 5.690 10 C 0.142 3.858 11 C 0.127 3.873 12 H 0.040 0.960 13 C 0.056 3.944 14 O -0.397 6.397 15 C 0.045 3.955 16 C 0.150 3.850 17 N -0.606 5.606 18 C -0.243 4.243 19 H 0.071 0.929 20 C -0.029 4.029 21 N -0.926 5.926 22 Si 0.941 3.059 23 H -0.274 1.274 24 H -0.299 1.299 25 H -0.282 1.282 26 O -0.208 6.208 27 H 0.105 0.895 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.188 0.812 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.416 0.584 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.048 0.952 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.042 0.958 40 H 0.008 0.992 41 H 0.066 0.934 42 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.404 -1.019 0.131 12.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.022 4.022 3 N -0.245 5.245 4 C -0.184 4.184 5 C -0.084 4.084 6 C -0.092 4.092 7 C 0.297 3.703 8 O -0.472 6.472 9 N -0.341 5.341 10 C 0.018 3.982 11 C 0.021 3.979 12 H 0.058 0.942 13 C -0.022 4.022 14 O -0.316 6.316 15 C -0.033 4.033 16 C 0.024 3.976 17 N -0.332 5.332 18 C -0.373 4.373 19 H 0.088 0.912 20 C -0.226 4.226 21 N -0.571 5.571 22 Si 0.771 3.229 23 H -0.199 1.199 24 H -0.227 1.227 25 H -0.208 1.208 26 O -0.096 6.096 27 H 0.124 0.876 28 H 0.133 0.867 29 H 0.129 0.871 30 H 0.205 0.795 31 H 0.158 0.842 32 H 0.161 0.839 33 H 0.254 0.746 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.066 0.934 37 H 0.135 0.865 38 H 0.122 0.878 39 H 0.061 0.939 40 H 0.026 0.974 41 H 0.084 0.916 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -12.963 -0.309 0.720 12.987 hybrid contribution 1.235 0.484 -1.000 1.661 sum -11.728 0.176 -0.280 11.733 Atomic orbital electron populations 1.20549 0.77755 1.06745 1.06026 1.27378 0.98162 0.77995 0.98678 1.70408 1.02405 1.31450 1.20273 1.23241 0.95533 0.93527 1.06105 1.22760 0.83522 0.95005 1.07109 1.20132 0.91932 1.02052 0.95067 1.20624 0.80201 0.78249 0.91236 1.90668 1.55448 1.53431 1.47684 1.45956 1.28017 1.50271 1.09841 1.21104 0.95267 0.98610 0.83205 1.21537 0.88012 0.94343 0.94015 0.94223 1.22999 0.86055 0.97659 0.95535 1.87809 1.18140 1.43579 1.82075 1.23223 0.89957 0.95399 0.94693 1.21233 0.87894 0.96205 0.92272 1.44309 1.02628 1.26159 1.60090 1.19335 1.17909 0.95861 1.04228 0.91196 1.25605 1.00453 0.99522 0.97052 1.70106 1.30049 1.33021 1.23944 0.85606 0.77113 0.81581 0.78631 1.19904 1.22685 1.20835 1.84342 1.16698 1.38376 1.70165 0.87642 0.86744 0.87136 0.79461 0.84188 0.83940 0.74612 0.93273 0.90339 0.93405 0.86524 0.87846 0.93936 0.97415 0.91609 0.94050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.75 10.51 71.23 0.75 -0.01 16 2 C 0.18 4.92 8.34 88.34 0.74 5.66 16 3 N -0.52 -16.32 11.29 -303.82 -3.43 -19.75 16 4 C -0.05 -1.48 11.80 83.39 0.98 -0.50 16 5 C -0.03 -0.95 5.88 24.79 0.15 -0.80 16 6 C -0.05 -1.42 6.25 29.10 0.18 -1.23 16 7 C 0.51 17.52 7.82 87.66 0.69 18.20 16 8 O -0.59 -24.61 16.03 -3.01 -0.05 -24.66 16 9 N -0.69 -23.59 3.77 -463.09 -1.75 -25.33 16 10 C 0.14 4.89 4.45 86.38 0.38 5.28 16 11 C 0.13 4.60 3.21 44.96 0.14 4.75 16 12 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 13 C 0.06 1.80 6.29 72.08 0.45 2.25 16 14 O -0.40 -14.23 10.74 -148.98 -1.60 -15.83 16 15 C 0.05 1.63 6.98 72.08 0.50 2.13 16 16 C 0.15 6.59 5.38 86.35 0.46 7.05 16 17 N -0.61 -26.54 3.03 -673.73 -2.04 -28.58 16 18 C -0.24 -11.40 7.06 84.03 0.59 -10.81 16 19 H 0.07 3.33 5.81 -2.91 -0.02 3.31 16 20 C -0.03 -1.44 5.06 84.86 0.43 -1.01 16 21 N -0.93 -48.44 11.13 21.65 0.24 -48.20 16 22 Si 0.94 40.55 29.57 68.60 2.03 42.58 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 25 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 26 O -0.21 -6.22 10.78 -3.77 -0.04 -6.26 16 27 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.19 5.42 8.06 -2.91 -0.02 5.39 16 31 H 0.14 2.95 8.14 -2.38 -0.02 2.93 16 32 H 0.14 3.45 8.14 -2.39 -0.02 3.43 16 33 H 0.42 14.54 7.31 -92.70 -0.68 13.86 16 34 H 0.05 1.89 7.57 -2.39 -0.02 1.87 16 35 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 36 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.12 2.97 8.14 -2.38 -0.02 2.95 16 38 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 39 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.07 3.25 6.33 -2.39 -0.02 3.23 16 42 H 0.25 12.91 8.31 -92.71 -0.77 12.14 16 Total: -1.00 -67.05 347.79 0.18 -66.87 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.37 Total: 28.21 kcal Atomic # 6 Polarization: 24.51 SS G_CDS: 6.45 Total: 30.96 kcal Atomic # 7 Polarization: -114.89 SS G_CDS: -6.98 Total: -121.87 kcal Atomic # 8 Polarization: -45.06 SS G_CDS: -1.69 Total: -46.75 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Total: -67.05 0.18 -66.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754968693.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.166 kcal (2) G-P(sol) polarization free energy of solvation -67.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds