Wall clock time and date at job start Fri Apr 10 2020 18:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34254 * 126.52831 * 2 1 4 4 C 1.34046 * 108.22884 * 180.02562 * 3 2 1 5 5 N 1.29933 * 109.24296 * 359.72225 * 4 3 2 6 6 C 1.36068 * 108.47828 * 0.44150 * 5 4 3 7 7 C 1.47417 * 126.44886 * 179.82652 * 6 5 4 8 8 O 1.21612 * 119.99845 * 184.68188 * 7 6 5 9 9 N 1.34771 * 119.99974 * 4.40681 * 7 6 5 10 10 C 1.46511 * 119.99736 * 174.81410 * 9 7 6 11 11 C 1.53002 * 109.54225 * 64.23242 * 10 9 7 12 12 N 1.46496 * 109.47084 * 54.98453 * 11 10 9 13 13 C 1.36942 * 119.99956 * 184.97860 * 12 11 10 14 14 H 1.08004 * 119.99837 * 5.00151 * 13 12 11 15 15 C 1.38810 * 120.00150 * 184.99885 * 13 12 11 16 16 N 1.31621 * 119.99942 * 184.93015 * 15 13 12 17 17 Si 1.86799 * 120.00061 * 4.93049 * 15 13 12 18 18 H 1.48502 * 109.47154 * 94.82296 * 17 15 13 19 19 H 1.48499 * 109.47436 * 214.82832 * 17 15 13 20 20 H 1.48505 * 109.47093 * 334.82822 * 17 15 13 21 21 C 1.53177 * 109.54181 * 304.05375 * 10 9 7 22 22 C 1.53283 * 109.06265 * 297.02766 * 21 10 9 23 23 O 1.42897 * 109.46361 * 302.44595 * 22 21 10 24 24 C 1.42911 * 114.09629 * 61.15741 * 23 22 21 25 25 C 1.53085 * 109.41626 * 298.84625 * 24 23 22 26 26 H 1.09003 * 109.46948 * 274.71310 * 1 2 3 27 27 H 1.09004 * 109.47183 * 34.70981 * 1 2 3 28 28 H 1.08990 * 109.47241 * 154.71296 * 1 2 3 29 29 H 1.08004 * 125.38056 * 180.02562 * 4 3 2 30 30 H 0.96994 * 120.00411 * 354.81216 * 9 7 6 31 31 H 1.08993 * 109.47129 * 174.98989 * 11 10 9 32 32 H 1.08996 * 109.46835 * 294.98813 * 11 10 9 33 33 H 0.97001 * 120.00549 * 4.98591 * 12 11 10 34 34 H 0.96999 * 119.99440 * 179.97438 * 16 15 13 35 35 H 1.08998 * 109.52203 * 57.02064 * 21 10 9 36 36 H 1.08999 * 109.51858 * 177.21122 * 21 10 9 37 37 H 1.08999 * 109.45483 * 182.45172 * 22 21 10 38 38 H 1.08998 * 109.46704 * 62.45531 * 22 21 10 39 39 H 1.09003 * 109.48025 * 178.85779 * 24 23 22 40 40 H 1.09005 * 109.48808 * 58.83186 * 24 23 22 41 41 H 1.09007 * 109.52331 * 297.69787 * 25 24 23 42 42 H 1.09002 * 109.57640 * 177.54725 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0788 0.0000 4 6 3.5788 0.6579 -0.0006 5 7 3.6002 -0.6412 0.0050 6 6 2.3169 -1.0937 -0.0005 7 6 1.8853 -2.5033 -0.0007 8 8 0.7040 -2.7774 -0.0920 9 7 2.8002 -3.4882 0.0947 10 6 2.3660 -4.8828 0.2091 11 6 1.6313 -5.2964 -1.0677 12 7 2.4897 -5.0457 -2.2280 13 6 2.0053 -5.2439 -3.4935 14 1 0.9680 -5.5066 -3.6398 15 6 2.8476 -5.1071 -4.5884 16 7 2.3621 -5.2016 -5.8081 17 14 4.6702 -4.7889 -4.3307 18 1 5.4077 -6.0773 -4.3674 19 1 5.1744 -3.8990 -5.4073 20 1 4.8774 -4.1373 -3.0124 21 6 1.4279 -5.0304 1.4109 22 6 2.1977 -4.6892 2.6917 23 8 3.3376 -5.5436 2.8040 24 6 4.2720 -5.4139 1.7305 25 6 3.5874 -5.7846 0.4124 26 1 -0.3633 0.0844 1.0242 27 1 -0.3634 0.8448 -0.5852 28 1 -0.3633 -0.9291 -0.4389 29 1 4.4490 1.2976 -0.0003 30 1 3.7462 -3.2738 0.0877 31 1 1.3870 -6.3574 -1.0188 32 1 0.7134 -4.7162 -1.1627 33 1 3.4011 -4.7395 -2.1001 34 1 2.9507 -5.1057 -6.5731 35 1 0.5830 -4.3509 1.2991 36 1 1.0660 -6.0571 1.4664 37 1 1.5483 -4.8342 3.5551 38 1 2.5245 -3.6501 2.6532 39 1 5.1170 -6.0809 1.9014 40 1 4.6262 -4.3843 1.6791 41 1 3.2689 -6.8265 0.4477 42 1 4.2849 -5.6448 -0.4134 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755093384.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:08 Heat of formation + Delta-G solvation = -38.293492 kcal Electronic energy + Delta-G solvation = -27230.352621 eV Core-core repulsion = 23406.002116 eV Total energy + Delta-G solvation = -3824.350505 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.50000 -40.54140 -38.36437 -35.94718 -34.92237 -33.73146 -32.43156 -31.71006 -31.13801 -30.73545 -27.52703 -26.80668 -24.16867 -23.75467 -23.22229 -22.14102 -21.29407 -20.66318 -19.15513 -18.28590 -17.73221 -16.96231 -16.39097 -16.04684 -15.96863 -15.48502 -14.96354 -14.78277 -14.57338 -14.32896 -14.09890 -13.59973 -13.50385 -13.23308 -13.13719 -12.78400 -12.57607 -12.48369 -12.42548 -11.95181 -11.80880 -11.41197 -11.24292 -11.13450 -10.89058 -10.86506 -10.61829 -10.36246 -10.11309 -9.74038 -9.56751 -9.45698 -9.00527 -8.82814 -8.64180 -7.14386 -5.72829 -3.06422 1.07442 2.02394 2.47665 3.24121 3.35534 3.38712 3.44959 3.47559 3.88840 3.97799 4.57263 4.61108 4.64845 4.83793 4.89974 4.99863 5.05164 5.11273 5.22593 5.33410 5.36958 5.38536 5.57417 5.64590 5.66693 5.74620 5.76120 5.92668 5.95822 5.96424 6.01013 6.14842 6.20313 6.28172 6.44790 6.77532 6.94257 7.19267 7.33246 7.76096 8.06176 8.39360 8.46476 9.26554 9.98624 10.19554 11.45936 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.009670 B = 0.006728 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2894.842833 B = 4160.651497 C = 5681.700856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.041 3.959 3 O -0.203 6.203 4 C 0.169 3.831 5 N -0.462 5.462 6 C -0.073 4.073 7 C 0.611 3.389 8 O -0.523 6.523 9 N -0.698 5.698 10 C 0.169 3.831 11 C 0.148 3.852 12 N -0.750 5.750 13 C -0.234 4.234 14 H 0.089 0.911 15 C 0.002 3.998 16 N -0.935 5.935 17 Si 0.885 3.115 18 H -0.285 1.285 19 H -0.292 1.292 20 H -0.280 1.280 21 C -0.164 4.164 22 C 0.065 3.935 23 O -0.384 6.384 24 C 0.061 3.939 25 C -0.157 4.157 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.120 0.880 29 H 0.253 0.747 30 H 0.403 0.597 31 H 0.030 0.970 32 H 0.055 0.945 33 H 0.359 0.641 34 H 0.258 0.742 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.046 0.954 39 H 0.095 0.905 40 H 0.048 0.952 41 H 0.092 0.908 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.772 9.823 18.586 21.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.015 4.015 3 O -0.089 6.089 4 C -0.059 4.059 5 N -0.192 5.192 6 C -0.193 4.193 7 C 0.397 3.603 8 O -0.400 6.400 9 N -0.349 5.349 10 C 0.084 3.916 11 C 0.020 3.980 12 N -0.397 5.397 13 C -0.364 4.364 14 H 0.107 0.893 15 C -0.193 4.193 16 N -0.583 5.583 17 Si 0.716 3.284 18 H -0.212 1.212 19 H -0.219 1.219 20 H -0.207 1.207 21 C -0.203 4.203 22 C -0.011 4.011 23 O -0.302 6.302 24 C -0.016 4.016 25 C -0.195 4.195 26 H 0.106 0.894 27 H 0.099 0.901 28 H 0.138 0.862 29 H 0.269 0.731 30 H 0.238 0.762 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.193 0.807 34 H 0.068 0.932 35 H 0.117 0.883 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.064 0.936 39 H 0.113 0.887 40 H 0.066 0.934 41 H 0.111 0.889 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.336 9.047 18.509 20.645 hybrid contribution 1.570 1.156 -0.471 2.006 sum 2.906 10.203 18.038 20.927 Atomic orbital electron populations 1.20675 0.82542 1.06366 1.04100 1.23768 0.95226 0.83276 0.99217 1.84356 1.18566 1.36395 1.69590 1.27939 0.85284 0.91264 1.01422 1.70721 1.21994 1.10158 1.16277 1.21600 0.88688 0.95918 1.13094 1.16520 0.85539 0.82214 0.76044 1.90708 1.16650 1.82733 1.49948 1.45747 1.09735 1.05824 1.73608 1.20716 0.94707 0.79801 0.96396 1.21061 0.94514 0.97987 0.84402 1.42664 1.12684 1.82099 1.02211 1.19055 0.96497 1.39337 0.81537 0.89342 1.24667 0.97377 1.02196 0.95095 1.69714 1.34239 1.57374 0.97005 0.86527 0.87551 0.77668 0.76614 1.21211 1.21903 1.20707 1.22593 0.99864 1.04168 0.93678 1.22549 0.87323 0.93414 0.97848 1.87896 1.33124 1.63720 1.45506 1.22597 0.91735 1.00811 0.86480 1.22459 0.97651 1.01022 0.98333 0.89358 0.90120 0.86207 0.73119 0.76165 0.95236 0.92709 0.80689 0.93216 0.88280 0.89934 0.89112 0.93606 0.88718 0.93381 0.88938 0.89877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.05 36.00 0.36 -0.50 16 2 C 0.04 0.55 7.44 -35.08 -0.26 0.29 16 3 O -0.20 -2.36 10.73 6.53 0.07 -2.29 16 4 C 0.17 1.77 13.19 51.96 0.69 2.45 16 5 N -0.46 -6.52 11.07 -11.48 -0.13 -6.64 16 6 C -0.07 -1.13 6.99 -83.02 -0.58 -1.71 16 7 C 0.61 10.40 7.21 -12.53 -0.09 10.31 16 8 O -0.52 -9.60 10.99 5.27 0.06 -9.54 16 9 N -0.70 -11.23 3.68 -48.50 -0.18 -11.40 16 10 C 0.17 2.70 0.32 -131.63 -0.04 2.66 16 11 C 0.15 3.02 4.95 -4.04 -0.02 3.00 16 12 N -0.75 -18.20 4.99 -59.91 -0.30 -18.50 16 13 C -0.23 -6.83 10.47 -15.06 -0.16 -6.98 16 14 H 0.09 2.79 8.06 -52.48 -0.42 2.36 16 15 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 16 N -0.93 -30.04 13.97 55.49 0.78 -29.26 16 17 Si 0.89 22.67 28.02 -169.99 -4.76 17.90 16 18 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 19 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 20 H -0.28 -6.70 6.14 56.52 0.35 -6.35 16 21 C -0.16 -2.29 4.72 -26.49 -0.13 -2.41 16 22 C 0.07 0.82 6.68 37.30 0.25 1.06 16 23 O -0.38 -5.14 10.77 -35.23 -0.38 -5.52 16 24 C 0.06 0.74 6.67 37.20 0.25 0.99 16 25 C -0.16 -2.23 4.79 -26.60 -0.13 -2.36 16 26 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.12 1.55 6.15 -51.93 -0.32 1.23 16 29 H 0.25 1.23 8.06 -52.48 -0.42 0.80 16 30 H 0.40 6.20 7.41 -40.82 -0.30 5.90 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 1.23 6.44 -51.93 -0.33 0.90 16 33 H 0.36 8.50 4.22 -40.82 -0.17 8.33 16 34 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 35 H 0.10 1.48 5.99 -51.93 -0.31 1.17 16 36 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.05 0.58 7.75 -51.93 -0.40 0.18 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.57 7.19 -51.93 -0.37 0.19 16 41 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.08 1.27 7.18 -51.93 -0.37 0.90 16 LS Contribution 337.29 15.07 5.08 5.08 Total: -1.00 -35.50 337.29 -5.30 -40.80 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -5.58 Total: 12.60 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: 0.05 Total: 6.76 kcal Atomic # 7 Polarization: -65.98 SS G_CDS: 0.17 Total: -65.81 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.25 Total: -17.35 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.76 Total: 17.90 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.50 -5.30 -40.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755093384.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.509 kcal (2) G-P(sol) polarization free energy of solvation -35.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds