Wall clock time and date at job start Fri Apr 10 2020 18:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34254 * 126.52831 * 2 1 4 4 C 1.34046 * 108.22884 * 180.02562 * 3 2 1 5 5 N 1.29933 * 109.24296 * 359.72225 * 4 3 2 6 6 C 1.36068 * 108.47828 * 0.44150 * 5 4 3 7 7 C 1.47417 * 126.44886 * 179.82652 * 6 5 4 8 8 O 1.21612 * 119.99845 * 184.68188 * 7 6 5 9 9 N 1.34771 * 119.99974 * 4.40681 * 7 6 5 10 10 C 1.46511 * 119.99736 * 174.81410 * 9 7 6 11 11 C 1.53002 * 109.54225 * 64.23242 * 10 9 7 12 12 N 1.46496 * 109.47084 * 54.98453 * 11 10 9 13 13 C 1.36942 * 119.99956 * 184.97860 * 12 11 10 14 14 H 1.08004 * 119.99837 * 5.00151 * 13 12 11 15 15 C 1.38810 * 120.00150 * 184.99885 * 13 12 11 16 16 N 1.31621 * 119.99942 * 184.93015 * 15 13 12 17 17 Si 1.86799 * 120.00061 * 4.93049 * 15 13 12 18 18 H 1.48502 * 109.47154 * 94.82296 * 17 15 13 19 19 H 1.48499 * 109.47436 * 214.82832 * 17 15 13 20 20 H 1.48505 * 109.47093 * 334.82822 * 17 15 13 21 21 C 1.53177 * 109.54181 * 304.05375 * 10 9 7 22 22 C 1.53283 * 109.06265 * 297.02766 * 21 10 9 23 23 O 1.42897 * 109.46361 * 302.44595 * 22 21 10 24 24 C 1.42911 * 114.09629 * 61.15741 * 23 22 21 25 25 C 1.53085 * 109.41626 * 298.84625 * 24 23 22 26 26 H 1.09003 * 109.46948 * 274.71310 * 1 2 3 27 27 H 1.09004 * 109.47183 * 34.70981 * 1 2 3 28 28 H 1.08990 * 109.47241 * 154.71296 * 1 2 3 29 29 H 1.08004 * 125.38056 * 180.02562 * 4 3 2 30 30 H 0.96994 * 120.00411 * 354.81216 * 9 7 6 31 31 H 1.08993 * 109.47129 * 174.98989 * 11 10 9 32 32 H 1.08996 * 109.46835 * 294.98813 * 11 10 9 33 33 H 0.97001 * 120.00549 * 4.98591 * 12 11 10 34 34 H 0.96999 * 119.99440 * 179.97438 * 16 15 13 35 35 H 1.08998 * 109.52203 * 57.02064 * 21 10 9 36 36 H 1.08999 * 109.51858 * 177.21122 * 21 10 9 37 37 H 1.08999 * 109.45483 * 182.45172 * 22 21 10 38 38 H 1.08998 * 109.46704 * 62.45531 * 22 21 10 39 39 H 1.09003 * 109.48025 * 178.85779 * 24 23 22 40 40 H 1.09005 * 109.48808 * 58.83186 * 24 23 22 41 41 H 1.09007 * 109.52331 * 297.69787 * 25 24 23 42 42 H 1.09002 * 109.57640 * 177.54725 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0788 0.0000 4 6 3.5788 0.6579 -0.0006 5 7 3.6002 -0.6412 0.0050 6 6 2.3169 -1.0937 -0.0005 7 6 1.8853 -2.5033 -0.0007 8 8 0.7040 -2.7774 -0.0920 9 7 2.8002 -3.4882 0.0947 10 6 2.3660 -4.8828 0.2091 11 6 1.6313 -5.2964 -1.0677 12 7 2.4897 -5.0457 -2.2280 13 6 2.0053 -5.2439 -3.4935 14 1 0.9680 -5.5066 -3.6398 15 6 2.8476 -5.1071 -4.5884 16 7 2.3621 -5.2016 -5.8081 17 14 4.6702 -4.7889 -4.3307 18 1 5.4077 -6.0773 -4.3674 19 1 5.1744 -3.8990 -5.4073 20 1 4.8774 -4.1373 -3.0124 21 6 1.4279 -5.0304 1.4109 22 6 2.1977 -4.6892 2.6917 23 8 3.3376 -5.5436 2.8040 24 6 4.2720 -5.4139 1.7305 25 6 3.5874 -5.7846 0.4124 26 1 -0.3633 0.0844 1.0242 27 1 -0.3634 0.8448 -0.5852 28 1 -0.3633 -0.9291 -0.4389 29 1 4.4490 1.2976 -0.0003 30 1 3.7462 -3.2738 0.0877 31 1 1.3870 -6.3574 -1.0188 32 1 0.7134 -4.7162 -1.1627 33 1 3.4011 -4.7395 -2.1001 34 1 2.9507 -5.1057 -6.5731 35 1 0.5830 -4.3509 1.2991 36 1 1.0660 -6.0571 1.4664 37 1 1.5483 -4.8342 3.5551 38 1 2.5245 -3.6501 2.6532 39 1 5.1170 -6.0809 1.9014 40 1 4.6262 -4.3843 1.6791 41 1 3.2689 -6.8265 0.4477 42 1 4.2849 -5.6448 -0.4134 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755093384.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:07 Heat of formation + Delta-G solvation = -67.676718 kcal Electronic energy + Delta-G solvation = -27231.626773 eV Core-core repulsion = 23406.002116 eV Total energy + Delta-G solvation = -3825.624657 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.43710 -41.77515 -39.52210 -37.41728 -35.92642 -35.53664 -33.42155 -33.36827 -32.49625 -32.13398 -28.67047 -28.25105 -25.43660 -25.04029 -24.54867 -23.23889 -22.85806 -21.73177 -20.49099 -19.80044 -19.36375 -17.91211 -17.43678 -17.16694 -17.02882 -16.81393 -16.50570 -16.11720 -15.83537 -15.57990 -15.31675 -15.24461 -14.88236 -14.55671 -14.43759 -14.02501 -13.88997 -13.79638 -13.44038 -13.35881 -13.20382 -12.92050 -12.87010 -12.43482 -12.32584 -12.14283 -11.90767 -11.85802 -11.73717 -11.47223 -11.09616 -10.84715 -10.60330 -10.10301 -9.84553 -9.29363 -8.06175 -5.38610 0.05977 1.06888 1.29171 1.35670 1.41750 1.57284 2.07320 2.27388 2.43374 2.91602 3.09613 3.24568 3.41880 3.62816 3.64220 3.77910 3.81297 3.91763 4.05702 4.22704 4.23650 4.38786 4.41907 4.55960 4.58198 4.68229 4.75069 4.80390 4.82610 4.86255 4.99352 5.06012 5.07648 5.10466 5.17515 5.18707 5.53941 5.72448 6.16816 6.19748 6.31225 6.59296 7.04187 7.14172 7.79164 8.01569 9.15798 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.009670 B = 0.006728 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2894.842833 B = 4160.651497 C = 5681.700856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.042 3.958 3 O -0.199 6.199 4 C 0.193 3.807 5 N -0.496 5.496 6 C -0.109 4.109 7 C 0.603 3.397 8 O -0.548 6.548 9 N -0.695 5.695 10 C 0.175 3.825 11 C 0.148 3.852 12 N -0.746 5.746 13 C -0.231 4.231 14 H 0.048 0.952 15 C -0.064 4.064 16 N -0.983 5.983 17 Si 0.959 3.041 18 H -0.274 1.274 19 H -0.296 1.296 20 H -0.254 1.254 21 C -0.158 4.158 22 C 0.072 3.928 23 O -0.390 6.390 24 C 0.065 3.935 25 C -0.154 4.154 26 H 0.110 0.890 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.305 0.695 30 H 0.407 0.593 31 H 0.030 0.970 32 H 0.029 0.971 33 H 0.366 0.634 34 H 0.258 0.742 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.043 0.957 39 H 0.119 0.881 40 H 0.055 0.945 41 H 0.094 0.906 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.164 11.243 20.844 24.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.015 4.015 3 O -0.086 6.086 4 C -0.036 4.036 5 N -0.224 5.224 6 C -0.227 4.227 7 C 0.390 3.610 8 O -0.427 6.427 9 N -0.346 5.346 10 C 0.089 3.911 11 C 0.021 3.979 12 N -0.392 5.392 13 C -0.362 4.362 14 H 0.066 0.934 15 C -0.256 4.256 16 N -0.634 5.634 17 Si 0.786 3.214 18 H -0.200 1.200 19 H -0.223 1.223 20 H -0.179 1.179 21 C -0.197 4.197 22 C -0.004 4.004 23 O -0.308 6.308 24 C -0.012 4.012 25 C -0.192 4.192 26 H 0.129 0.871 27 H 0.119 0.881 28 H 0.112 0.888 29 H 0.320 0.680 30 H 0.243 0.757 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.200 0.800 34 H 0.066 0.934 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.130 0.870 38 H 0.062 0.938 39 H 0.136 0.864 40 H 0.073 0.927 41 H 0.113 0.887 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.735 10.452 20.823 23.597 hybrid contribution 0.714 0.769 -1.197 1.591 sum 4.449 11.221 19.627 23.042 Atomic orbital electron populations 1.20698 0.81364 1.05791 1.05625 1.24082 0.96125 0.83205 0.98060 1.84396 1.19014 1.35632 1.69529 1.29149 0.85880 0.90849 0.97711 1.70678 1.21379 1.11970 1.18386 1.21503 0.90044 0.95449 1.15686 1.16881 0.85364 0.83241 0.75528 1.90696 1.17583 1.83375 1.51004 1.45727 1.09862 1.05599 1.73445 1.20613 0.95636 0.80309 0.94538 1.21126 0.93768 0.97522 0.85509 1.42538 1.13258 1.81888 1.01508 1.18981 0.94913 1.38411 0.83859 0.93414 1.25522 1.02861 1.02637 0.94545 1.69907 1.36236 1.59148 0.98120 0.85347 0.80549 0.77957 0.77530 1.20043 1.22280 1.17862 1.22529 0.99230 1.04178 0.93733 1.22547 0.87253 0.93152 0.97475 1.87901 1.33327 1.63876 1.45728 1.22671 0.91796 1.01850 0.84852 1.22452 0.96606 1.00617 0.99502 0.87144 0.88064 0.88829 0.68036 0.75657 0.95208 0.95313 0.79996 0.93351 0.89620 0.89393 0.87007 0.93832 0.86350 0.92692 0.88732 0.90652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.63 10.05 71.24 0.72 -0.92 16 2 C 0.04 1.08 7.44 25.19 0.19 1.26 16 3 O -0.20 -4.12 10.73 0.45 0.00 -4.12 16 4 C 0.19 3.40 13.19 130.52 1.72 5.12 16 5 N -0.50 -13.00 11.07 -305.15 -3.38 -16.37 16 6 C -0.11 -3.28 6.99 40.41 0.28 -3.00 16 7 C 0.60 20.68 7.21 86.66 0.63 21.31 16 8 O -0.55 -20.84 10.99 -4.07 -0.04 -20.88 16 9 N -0.70 -21.97 3.68 -425.60 -1.56 -23.54 16 10 C 0.17 5.49 0.32 3.72 0.00 5.49 16 11 C 0.15 6.18 4.95 86.38 0.43 6.61 16 12 N -0.75 -36.51 4.99 -343.47 -1.71 -38.23 16 13 C -0.23 -13.87 10.47 84.03 0.88 -12.99 16 14 H 0.05 3.19 8.06 -2.91 -0.02 3.17 16 15 C -0.06 -3.93 5.50 84.86 0.47 -3.47 16 16 N -0.98 -65.00 13.97 21.65 0.30 -64.70 16 17 Si 0.96 46.76 28.02 68.60 1.92 48.68 16 18 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 19 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 20 H -0.25 -11.09 6.14 99.48 0.61 -10.48 16 21 C -0.16 -4.31 4.72 30.75 0.15 -4.16 16 22 C 0.07 1.66 6.68 72.08 0.48 2.14 16 23 O -0.39 -9.36 10.77 -148.98 -1.60 -10.96 16 24 C 0.06 1.40 6.67 72.01 0.48 1.88 16 25 C -0.15 -4.11 4.79 30.68 0.15 -3.96 16 26 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.09 2.50 6.15 -2.39 -0.01 2.49 16 29 H 0.30 1.44 8.06 -2.91 -0.02 1.42 16 30 H 0.41 12.00 7.41 -92.71 -0.69 11.32 16 31 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.03 1.36 6.44 -2.39 -0.02 1.35 16 33 H 0.37 16.93 4.22 -92.71 -0.39 16.54 16 34 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 35 H 0.09 2.60 5.99 -2.39 -0.01 2.59 16 36 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.04 1.03 7.75 -2.39 -0.02 1.02 16 39 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.05 1.13 7.19 -2.38 -0.02 1.12 16 41 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 42 H 0.07 2.15 7.18 -2.39 -0.02 2.13 16 Total: -1.00 -79.81 337.29 0.38 -79.43 By element: Atomic # 1 Polarization: 35.48 SS G_CDS: -0.10 Total: 35.38 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: 6.56 Total: 15.32 kcal Atomic # 7 Polarization: -136.49 SS G_CDS: -6.35 Total: -142.84 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -1.64 Total: -35.96 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.92 Total: 48.68 kcal Total: -79.81 0.38 -79.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755093384.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.750 kcal (2) G-P(sol) polarization free energy of solvation -79.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds