Wall clock time and date at job start Fri Apr 10 2020 18:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00510 * 2 1 4 4 H 1.48500 * 109.46785 * 271.85002 * 3 2 1 5 5 H 1.48505 * 109.46931 * 31.85074 * 3 2 1 6 6 H 1.48499 * 109.47214 * 151.85129 * 3 2 1 7 7 C 1.38817 * 119.99457 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99951 * 341.62605 * 7 2 1 9 9 N 1.36935 * 119.99893 * 161.61747 * 7 2 1 10 10 C 1.46927 * 120.63137 * 148.83599 * 9 7 2 11 11 C 1.53190 * 108.77416 * 126.37280 * 10 9 7 12 12 C 1.53036 * 109.31343 * 54.63874 * 11 10 9 13 13 C 1.53003 * 109.45910 * 178.62982 * 12 11 10 14 14 O 1.42896 * 109.47041 * 183.01239 * 13 12 11 15 15 N 1.46494 * 109.46402 * 58.65521 * 12 11 10 16 16 C 1.34774 * 120.00152 * 62.48126 * 15 12 11 17 17 O 1.21279 * 120.00219 * 354.65020 * 16 15 12 18 18 C 1.50703 * 120.00090 * 174.36624 * 16 15 12 19 19 C 1.50700 * 109.47283 * 180.27763 * 18 16 15 20 20 C 1.41380 * 128.00777 * 269.68515 * 19 18 16 21 21 N 1.30174 * 106.39085 * 179.89342 * 20 19 18 22 22 O 1.20919 * 111.60833 * 0.39093 * 21 20 19 23 23 C 1.34043 * 111.56720 * 359.74289 * 22 21 20 24 24 C 1.53039 * 109.52529 * 298.63950 * 12 11 10 25 25 C 1.46927 * 120.63183 * 328.81663 * 9 7 2 26 26 H 0.97003 * 119.99340 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.58583 * 6.58339 * 10 9 7 28 28 H 1.09005 * 109.70544 * 246.23148 * 10 9 7 29 29 H 1.08997 * 109.49600 * 294.67887 * 11 10 9 30 30 H 1.09007 * 109.49510 * 174.58800 * 11 10 9 31 31 H 1.09004 * 109.47060 * 303.00860 * 13 12 11 32 32 H 1.08995 * 109.47580 * 63.00847 * 13 12 11 33 33 H 0.96697 * 113.99892 * 179.97438 * 14 13 12 34 34 H 0.97002 * 119.99827 * 242.49320 * 15 12 11 35 35 H 1.09002 * 109.47381 * 300.28412 * 18 16 15 36 36 H 1.09012 * 109.46790 * 60.28199 * 18 16 15 37 37 H 1.07996 * 126.80710 * 0.02610 * 20 19 18 38 38 H 1.07996 * 126.77706 * 179.97438 * 23 22 21 39 39 H 1.08998 * 109.49622 * 181.31639 * 24 12 11 40 40 H 1.09004 * 109.49683 * 301.40464 * 24 12 11 41 41 H 1.09003 * 109.58651 * 353.42099 * 25 9 7 42 42 H 1.09000 * 109.58655 * 113.84023 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4587 2.0688 -1.3994 5 1 1.4679 2.6410 0.7389 6 1 3.5669 1.4290 0.6605 7 6 2.0102 -1.2023 0.0005 8 1 1.5114 -2.1135 0.2958 9 7 3.3271 -1.2328 -0.3734 10 6 4.2496 -2.2140 0.2140 11 6 4.9411 -2.9799 -0.9182 12 6 5.6062 -1.9838 -1.8707 13 6 6.3269 -2.7466 -2.9842 14 8 7.0064 -1.8200 -3.8337 15 7 6.5745 -1.1718 -1.1297 16 6 7.6375 -1.7579 -0.5442 17 8 7.7419 -2.9662 -0.5474 18 6 8.6999 -0.9117 0.1088 19 6 9.7732 -1.8035 0.6777 20 6 9.8429 -2.3639 1.9738 21 7 10.9406 -3.0624 2.0135 22 8 11.5411 -3.0081 0.9653 23 6 10.8975 -2.2488 0.0676 24 6 4.5404 -1.0728 -2.4841 25 6 3.8445 -0.2852 -1.3701 26 1 -0.4849 0.8401 0.0004 27 1 3.6918 -2.9111 0.8394 28 1 4.9976 -1.6998 0.8175 29 1 4.2028 -3.5677 -1.4637 30 1 5.6977 -3.6435 -0.4994 31 1 7.0497 -3.4340 -2.5447 32 1 5.5993 -3.3094 -3.5689 33 1 7.4865 -2.2346 -4.5634 34 1 6.4504 -0.2122 -1.0602 35 1 9.1380 -0.2429 -0.6320 36 1 8.2536 -0.3233 0.9107 37 1 9.1262 -2.2392 2.7721 38 1 11.2133 -2.0341 -0.9426 39 1 5.0117 -0.3789 -3.1801 40 1 3.8059 -1.6785 -3.0150 41 1 3.0195 0.2904 -1.7898 42 1 4.5593 0.3883 -0.8973 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755179895.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:10 Heat of formation + Delta-G solvation = -18.275090 kcal Electronic energy + Delta-G solvation = -26864.621272 eV Core-core repulsion = 23041.138830 eV Total energy + Delta-G solvation = -3823.482442 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.85569 -41.55272 -39.15579 -37.49867 -35.72498 -35.38312 -33.89227 -33.12105 -32.27101 -32.00980 -29.51963 -28.40551 -25.41395 -24.49341 -24.01807 -23.31166 -22.54393 -21.48378 -20.24327 -19.01611 -18.71746 -18.56238 -18.14546 -17.86656 -17.20970 -16.59941 -16.40360 -15.81775 -15.81402 -15.40614 -15.29388 -15.19315 -14.56925 -14.43285 -14.24125 -13.99647 -13.94578 -13.71120 -13.45687 -13.24104 -12.95742 -12.75671 -12.41464 -12.17722 -12.13359 -12.08708 -11.67878 -11.52154 -11.39895 -11.28266 -11.02793 -10.73541 -10.51365 -10.17225 -9.90601 -8.86388 -8.15610 -5.52546 0.64264 1.29224 1.32712 1.44068 1.53826 1.78712 2.32364 2.43877 2.50661 3.08555 3.22444 3.40115 3.41043 3.71061 3.82912 3.91951 3.93777 4.10009 4.21985 4.29946 4.34823 4.43942 4.53136 4.61876 4.64319 4.67167 4.78293 4.80178 4.85901 4.91667 4.99220 5.09108 5.11901 5.17675 5.17969 5.32421 5.68254 5.89993 6.14324 6.71473 6.91566 6.93470 7.35100 7.39198 7.61990 8.03472 9.04614 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.018504 B = 0.004166 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.826274 B = 6719.460577 C = 7342.792636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.034 4.034 3 Si 0.953 3.047 4 H -0.268 1.268 5 H -0.314 1.314 6 H -0.252 1.252 7 C -0.254 4.254 8 H 0.042 0.958 9 N -0.615 5.615 10 C 0.157 3.843 11 C -0.134 4.134 12 C 0.196 3.804 13 C 0.077 3.923 14 O -0.572 6.572 15 N -0.703 5.703 16 C 0.518 3.482 17 O -0.570 6.570 18 C -0.058 4.058 19 C -0.192 4.192 20 C -0.008 4.008 21 N -0.402 5.402 22 O 0.084 5.916 23 C -0.036 4.036 24 C -0.122 4.122 25 C 0.123 3.877 26 H 0.262 0.738 27 H 0.044 0.956 28 H 0.031 0.969 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.393 0.607 34 H 0.407 0.593 35 H 0.140 0.860 36 H 0.122 0.878 37 H 0.196 0.804 38 H 0.252 0.748 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.051 0.949 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.050 0.433 -6.488 23.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.229 4.229 3 Si 0.781 3.219 4 H -0.194 1.194 5 H -0.244 1.244 6 H -0.176 1.176 7 C -0.384 4.384 8 H 0.060 0.940 9 N -0.340 5.340 10 C 0.032 3.968 11 C -0.174 4.174 12 C 0.110 3.890 13 C -0.002 4.002 14 O -0.380 6.380 15 N -0.355 5.355 16 C 0.306 3.694 17 O -0.450 6.450 18 C -0.098 4.098 19 C -0.197 4.197 20 C -0.187 4.187 21 N -0.108 5.108 22 O 0.022 5.978 23 C -0.117 4.117 24 C -0.162 4.162 25 C -0.002 4.002 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.242 0.758 34 H 0.244 0.756 35 H 0.158 0.842 36 H 0.140 0.860 37 H 0.213 0.787 38 H 0.268 0.732 39 H 0.109 0.891 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 23.351 -0.683 -5.144 23.921 hybrid contribution -1.118 0.975 -0.443 1.548 sum 22.233 0.292 -5.587 22.927 Atomic orbital electron populations 1.69974 1.07755 1.27360 1.55547 1.26072 0.95863 1.01428 0.99530 0.85795 0.78880 0.79245 0.78002 1.19418 1.24354 1.17616 1.18799 0.85888 0.93062 1.40623 0.94044 1.44397 1.05918 1.38723 1.44951 1.20859 0.91351 0.90881 0.93710 1.22218 0.99267 0.98030 0.97875 1.20097 0.87709 0.91184 0.90050 1.22396 0.95690 0.91219 0.90901 1.86391 1.70391 1.36688 1.44499 1.45905 1.24298 1.11592 1.53684 1.20882 0.82367 0.88653 0.77540 1.90634 1.78198 1.15990 1.60138 1.19960 0.91302 0.96060 1.02459 1.20931 0.98821 1.05712 0.94228 1.25294 0.96586 0.97010 0.99783 1.73844 1.10105 1.21650 1.05179 1.84755 1.42746 1.53628 1.16696 1.26475 0.93150 0.93886 0.98200 1.22100 0.96776 0.99351 0.97924 1.21398 0.96708 0.92242 0.89834 0.92944 0.93745 0.95061 0.92189 0.90212 0.92520 0.92870 0.75825 0.75644 0.84179 0.85971 0.78664 0.73163 0.89093 0.91516 0.93041 0.94038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.86 13.97 21.65 0.30 -59.56 16 2 C -0.03 -1.96 5.24 84.86 0.44 -1.51 16 3 Si 0.95 44.23 24.37 68.60 1.67 45.90 16 4 H -0.27 -11.51 6.65 99.48 0.66 -10.85 16 5 H -0.31 -15.12 7.11 99.48 0.71 -14.41 16 6 H -0.25 -10.78 6.68 99.48 0.66 -10.12 16 7 C -0.25 -14.24 10.01 84.03 0.84 -13.39 16 8 H 0.04 2.60 8.06 -2.91 -0.02 2.58 16 9 N -0.62 -27.65 2.72 -699.14 -1.90 -29.55 16 10 C 0.16 6.08 6.26 86.36 0.54 6.62 16 11 C -0.13 -4.38 4.70 30.67 0.14 -4.24 16 12 C 0.20 5.40 0.44 3.63 0.00 5.40 16 13 C 0.08 1.81 5.64 71.98 0.41 2.22 16 14 O -0.57 -11.26 12.89 -148.98 -1.92 -13.18 16 15 N -0.70 -16.41 3.93 -422.82 -1.66 -18.07 16 16 C 0.52 11.67 7.23 87.66 0.63 12.30 16 17 O -0.57 -16.75 12.31 -3.03 -0.04 -16.79 16 18 C -0.06 -0.83 6.29 29.10 0.18 -0.65 16 19 C -0.19 -3.46 4.82 -19.74 -0.10 -3.56 16 20 C -0.01 -0.18 12.16 85.71 1.04 0.86 16 21 N -0.40 -10.14 12.07 -59.26 -0.72 -10.85 16 22 O 0.08 1.80 11.20 71.61 0.80 2.60 16 23 C -0.04 -0.55 12.26 67.18 0.82 0.28 16 24 C -0.12 -3.73 4.86 30.66 0.15 -3.58 16 25 C 0.12 4.68 3.93 86.35 0.34 5.02 16 26 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 27 H 0.04 1.84 7.93 -2.38 -0.02 1.82 16 28 H 0.03 1.15 7.74 -2.38 -0.02 1.14 16 29 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.08 2.64 6.21 -2.38 -0.01 2.63 16 31 H 0.06 1.47 6.26 -2.39 -0.01 1.45 16 32 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.39 4.31 9.12 -74.06 -0.68 3.63 16 34 H 0.41 8.35 7.20 -92.71 -0.67 7.68 16 35 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.12 1.43 8.14 -2.38 -0.02 1.42 16 37 H 0.20 3.66 8.06 -2.91 -0.02 3.64 16 38 H 0.25 1.49 8.06 -2.91 -0.02 1.47 16 39 H 0.09 2.41 7.73 -2.39 -0.02 2.39 16 40 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 41 H 0.05 2.21 4.83 -2.39 -0.01 2.20 16 42 H 0.04 1.43 5.77 -2.39 -0.01 1.41 16 Total: -1.00 -76.11 333.71 1.64 -74.47 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -0.36 Total: 19.26 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 5.45 Total: 5.76 kcal Atomic # 7 Polarization: -114.06 SS G_CDS: -3.97 Total: -118.04 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -1.16 Total: -27.37 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.67 Total: 45.90 kcal Total: -76.11 1.64 -74.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755179895.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.198 kcal (2) G-P(sol) polarization free energy of solvation -76.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds