Wall clock time and date at job start Fri Apr 10 2020 18:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99757 * 2 1 4 4 C 1.52998 * 109.46798 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47470 * 64.99623 * 4 3 2 6 6 C 1.46502 * 120.00164 * 269.99865 * 5 4 3 7 7 C 1.52992 * 109.47281 * 269.99960 * 6 5 4 8 8 O 1.42898 * 109.47366 * 64.99999 * 7 6 5 9 9 C 1.34786 * 119.99934 * 89.99799 * 5 4 3 10 10 O 1.21569 * 119.99713 * 0.02562 * 9 5 4 11 11 N 1.34775 * 119.99839 * 179.97438 * 9 5 4 12 12 C 1.39249 * 119.99864 * 185.79488 * 11 9 5 13 13 C 1.39682 * 119.57165 * 18.80827 * 12 11 9 14 14 C 1.38651 * 119.49357 * 180.02562 * 13 12 11 15 15 C 1.38347 * 118.66725 * 359.73017 * 14 13 12 16 16 C 1.40571 * 119.13385 * 0.53015 * 15 14 13 17 17 C 1.41336 * 119.78947 * 179.72833 * 16 15 14 18 18 H 1.08003 * 119.99990 * 6.98288 * 17 16 15 19 19 C 1.40024 * 119.99994 * 186.97847 * 17 16 15 20 20 N 1.30752 * 119.99743 * 181.93795 * 19 17 16 21 21 Si 1.86792 * 120.00153 * 1.93767 * 19 17 16 22 22 H 1.48505 * 109.47287 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.47074 * 299.99848 * 21 19 17 24 24 H 1.48500 * 109.47261 * 59.99944 * 21 19 17 25 25 N 1.31895 * 119.57457 * 198.82599 * 12 11 9 26 26 H 1.08999 * 109.46950 * 60.00662 * 1 2 3 27 27 H 1.09004 * 109.46836 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47335 * 299.99930 * 1 2 3 29 29 H 1.08996 * 109.47358 * 59.99594 * 3 2 1 30 30 H 1.09000 * 109.46533 * 299.99405 * 3 2 1 31 31 H 1.09002 * 109.47296 * 304.99699 * 4 3 2 32 32 H 1.09002 * 109.47107 * 185.00344 * 4 3 2 33 33 H 1.09000 * 109.47005 * 30.00084 * 6 5 4 34 34 H 1.09006 * 109.47066 * 149.99777 * 6 5 4 35 35 H 1.08997 * 109.47501 * 185.00138 * 7 6 5 36 36 H 1.09000 * 109.47242 * 304.99921 * 7 6 5 37 37 H 0.96697 * 114.00208 * 180.02562 * 8 7 6 38 38 H 0.96993 * 120.00038 * 5.80285 * 11 9 5 39 39 H 1.08005 * 120.25674 * 359.97438 * 13 12 11 40 40 H 1.08000 * 120.66499 * 179.97438 * 14 13 12 41 41 H 1.08001 * 120.43132 * 180.26525 * 15 14 13 42 42 H 0.97001 * 119.99902 * 354.82737 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2526 6 6 4.1052 -0.8922 -1.3426 7 6 5.5222 -1.3040 -0.9387 8 8 5.7351 -0.9900 0.4390 9 6 4.2615 1.3337 -2.3218 10 8 4.1544 2.5423 -2.2470 11 7 4.6670 0.7630 -3.4735 12 6 5.0777 1.5603 -4.5387 13 6 5.4450 2.8875 -4.3049 14 6 5.8531 3.6801 -5.3668 15 6 5.8893 3.1252 -6.6336 16 6 5.5020 1.7848 -6.8049 17 6 5.5281 1.2056 -8.0939 18 1 5.9500 1.7534 -8.9236 19 6 5.0071 -0.0784 -8.2952 20 7 5.0655 -0.6293 -9.4795 21 14 4.2287 -1.0042 -6.8718 22 1 3.7572 -2.3312 -7.3431 23 1 5.2329 -1.1895 -5.7936 24 1 3.0767 -0.2278 -6.3472 25 7 5.1145 1.0526 -5.7555 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6885 1.8464 0.8899 30 1 1.6886 1.8462 -0.8901 31 1 3.8514 0.5682 0.8410 32 1 3.9785 2.1765 0.0890 33 1 3.3853 -1.3630 -0.6732 34 1 3.9120 -1.2116 -2.3667 35 1 5.6461 -2.3763 -1.0902 36 1 6.2456 -0.7648 -1.5502 37 1 6.6151 -1.2240 0.7644 38 1 4.6727 -0.2030 -3.5604 39 1 5.4106 3.2936 -3.3046 40 1 6.1408 4.7088 -5.2076 41 1 6.2067 3.7155 -7.4805 42 1 5.4009 -0.1212 -10.2347 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881151427.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:24 Heat of formation + Delta-G solvation = -82.694386 kcal Electronic energy + Delta-G solvation = -26334.564373 eV Core-core repulsion = 22508.288501 eV Total energy + Delta-G solvation = -3826.275872 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.58296 -38.65153 -37.79960 -37.16526 -35.15698 -34.62042 -33.46686 -31.15742 -30.85661 -29.47694 -28.33961 -26.35483 -25.31739 -23.59123 -23.08135 -21.84847 -21.34612 -19.42856 -18.55611 -18.11760 -17.35351 -17.02368 -16.55091 -16.21282 -15.60338 -15.33407 -15.09315 -14.90217 -14.51363 -14.31043 -13.97723 -13.74915 -13.39068 -13.12462 -12.76241 -12.62608 -12.44544 -12.25537 -12.09805 -11.93451 -11.81125 -11.60351 -11.19446 -11.06350 -10.78938 -10.36278 -10.21172 -9.98525 -9.82141 -9.64323 -9.35474 -9.14213 -8.64117 -8.51214 -7.78680 -7.32888 -7.22976 -4.75721 2.40667 2.66815 2.69238 3.41001 3.52455 3.64836 3.70081 3.90961 4.00826 4.06313 4.38288 4.66948 4.90039 5.01606 5.04586 5.09670 5.17506 5.20691 5.27526 5.32330 5.41770 5.48667 5.54860 5.58307 5.78275 5.85738 5.88513 6.11780 6.35061 6.51378 6.56667 6.71606 6.87991 7.05404 7.19389 7.33335 7.43396 7.46313 7.64293 7.77168 7.90762 8.19868 8.34668 8.65264 8.78058 9.43172 10.01595 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.014894 B = 0.004425 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.481458 B = 6326.118100 C = 6715.864735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.388 6.388 3 C 0.041 3.959 4 C 0.143 3.857 5 N -0.613 5.613 6 C 0.109 3.891 7 C 0.054 3.946 8 O -0.567 6.567 9 C 0.709 3.291 10 O -0.564 6.564 11 N -0.668 5.668 12 C 0.404 3.596 13 C -0.309 4.309 14 C -0.034 4.034 15 C -0.280 4.280 16 C 0.276 3.724 17 C -0.478 4.478 18 H 0.083 0.917 19 C 0.044 3.956 20 N -0.809 5.809 21 Si 1.157 2.843 22 H -0.333 1.333 23 H -0.286 1.286 24 H -0.294 1.294 25 N -0.601 5.601 26 H 0.040 0.960 27 H 0.083 0.917 28 H 0.038 0.962 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.057 0.943 36 H 0.050 0.950 37 H 0.377 0.623 38 H 0.401 0.599 39 H 0.142 0.858 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.295 -2.602 19.030 19.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.307 6.307 3 C -0.037 4.037 4 C 0.020 3.980 5 N -0.350 5.350 6 C -0.014 4.014 7 C -0.025 4.025 8 O -0.372 6.372 9 C 0.411 3.589 10 O -0.441 6.441 11 N -0.317 5.317 12 C 0.173 3.827 13 C -0.334 4.334 14 C -0.058 4.058 15 C -0.302 4.302 16 C 0.152 3.848 17 C -0.510 4.510 18 H 0.101 0.899 19 C -0.177 4.177 20 N -0.431 5.431 21 Si 0.993 3.007 22 H -0.267 1.267 23 H -0.214 1.214 24 H -0.222 1.222 25 N -0.327 5.327 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.104 0.896 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.224 0.776 38 H 0.238 0.762 39 H 0.159 0.841 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.735 -3.907 19.207 20.164 hybrid contribution 1.351 1.921 -0.702 2.451 sum -3.384 -1.986 18.505 18.916 Atomic orbital electron populations 1.22709 0.81374 1.02511 0.99837 1.87857 1.19429 1.28023 1.95424 1.23121 0.94966 0.84848 1.00736 1.21374 0.91100 1.00244 0.85330 1.46960 1.70752 1.05898 1.11375 1.21662 0.96282 0.80953 1.02550 1.22756 0.97662 0.99016 0.83078 1.86463 1.38076 1.87064 1.25625 1.15733 0.77997 0.85224 0.79933 1.90828 1.58664 1.11808 1.82772 1.42529 1.67252 1.10086 1.11824 1.17815 0.91596 0.88232 0.85053 1.21553 1.16523 0.94231 1.01126 1.20927 0.94514 0.97700 0.92665 1.21578 1.15027 0.96915 0.96723 1.18250 0.87345 0.88696 0.90542 1.20710 1.34535 1.02260 0.93540 0.89868 1.27739 0.92178 0.95636 1.02153 1.70645 1.32446 1.38798 1.01185 0.81785 0.76225 0.71375 0.71271 1.26673 1.21449 1.22226 1.65860 1.30660 1.38034 0.98192 0.94166 0.89808 0.94335 0.92550 0.92679 0.88694 0.88449 0.87997 0.89618 0.92444 0.93201 0.77629 0.76182 0.84100 0.87657 0.87732 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.41 16 2 O -0.39 -4.54 9.53 -35.23 -0.34 -4.88 16 3 C 0.04 0.47 6.28 37.16 0.23 0.71 16 4 C 0.14 1.73 5.63 -4.05 -0.02 1.70 16 5 N -0.61 -8.57 2.40 -179.43 -0.43 -9.00 16 6 C 0.11 1.25 5.45 -4.04 -0.02 1.23 16 7 C 0.05 0.54 7.39 37.15 0.27 0.81 16 8 O -0.57 -5.43 12.48 -35.23 -0.44 -5.87 16 9 C 0.71 12.84 8.12 -86.91 -0.71 12.13 16 10 O -0.56 -11.71 12.72 5.30 0.07 -11.64 16 11 N -0.67 -13.06 5.29 -15.79 -0.08 -13.14 16 12 C 0.40 9.52 7.51 -155.00 -1.16 8.36 16 13 C -0.31 -7.15 8.83 -38.89 -0.34 -7.49 16 14 C -0.03 -0.75 10.15 -39.39 -0.40 -1.15 16 15 C -0.28 -6.78 9.83 -38.66 -0.38 -7.16 16 16 C 0.28 7.35 6.39 -85.00 -0.54 6.80 16 17 C -0.48 -13.18 9.58 -37.74 -0.36 -13.54 16 18 H 0.08 2.28 8.05 -52.48 -0.42 1.86 16 19 C 0.04 1.20 5.52 -17.34 -0.10 1.10 16 20 N -0.81 -22.16 13.65 55.55 0.76 -21.40 16 21 Si 1.16 28.29 25.53 -169.99 -4.34 23.95 16 22 H -0.33 -8.00 7.11 56.52 0.40 -7.60 16 23 H -0.29 -6.67 6.70 56.52 0.38 -6.29 16 24 H -0.29 -7.36 7.10 56.52 0.40 -6.96 16 25 N -0.60 -15.47 4.58 -10.26 -0.05 -15.52 16 26 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 1.05 7.11 -51.93 -0.37 0.68 16 32 H 0.10 1.23 7.42 -51.93 -0.39 0.84 16 33 H 0.10 1.11 7.11 -51.93 -0.37 0.74 16 34 H 0.09 0.97 6.29 -51.93 -0.33 0.64 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.38 2.10 9.12 45.56 0.42 2.52 16 38 H 0.40 7.02 6.52 -40.82 -0.27 6.75 16 39 H 0.14 3.21 5.33 -52.50 -0.28 2.93 16 40 H 0.11 2.00 8.06 -52.49 -0.42 1.58 16 41 H 0.10 2.36 8.06 -52.49 -0.42 1.94 16 42 H 0.28 7.41 8.72 -40.82 -0.36 7.06 16 LS Contribution 347.56 15.07 5.24 5.24 Total: -1.00 -33.01 347.56 -7.01 -40.02 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -4.98 Total: 7.33 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -2.42 Total: 4.91 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: 0.20 Total: -59.07 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.71 Total: -22.39 kcal Atomic # 14 Polarization: 28.29 SS G_CDS: -4.34 Total: 23.95 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.01 -7.01 -40.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881151427.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.670 kcal (2) G-P(sol) polarization free energy of solvation -33.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds