Wall clock time and date at job start Fri Apr 10 2020 18:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99757 * 2 1 4 4 C 1.52998 * 109.46798 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47470 * 64.99623 * 4 3 2 6 6 C 1.46502 * 120.00164 * 269.99865 * 5 4 3 7 7 C 1.52992 * 109.47281 * 269.99960 * 6 5 4 8 8 O 1.42898 * 109.47366 * 64.99999 * 7 6 5 9 9 C 1.34786 * 119.99934 * 89.99799 * 5 4 3 10 10 O 1.21569 * 119.99713 * 0.02562 * 9 5 4 11 11 N 1.34775 * 119.99839 * 179.97438 * 9 5 4 12 12 C 1.39249 * 119.99864 * 185.79488 * 11 9 5 13 13 C 1.39682 * 119.57165 * 18.80827 * 12 11 9 14 14 C 1.38651 * 119.49357 * 180.02562 * 13 12 11 15 15 C 1.38347 * 118.66725 * 359.73017 * 14 13 12 16 16 C 1.40571 * 119.13385 * 0.53015 * 15 14 13 17 17 C 1.41336 * 119.78947 * 179.72833 * 16 15 14 18 18 H 1.08003 * 119.99990 * 6.98288 * 17 16 15 19 19 C 1.40024 * 119.99994 * 186.97847 * 17 16 15 20 20 N 1.30752 * 119.99743 * 181.93795 * 19 17 16 21 21 Si 1.86792 * 120.00153 * 1.93767 * 19 17 16 22 22 H 1.48505 * 109.47287 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.47074 * 299.99848 * 21 19 17 24 24 H 1.48500 * 109.47261 * 59.99944 * 21 19 17 25 25 N 1.31895 * 119.57457 * 198.82599 * 12 11 9 26 26 H 1.08999 * 109.46950 * 60.00662 * 1 2 3 27 27 H 1.09004 * 109.46836 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47335 * 299.99930 * 1 2 3 29 29 H 1.08996 * 109.47358 * 59.99594 * 3 2 1 30 30 H 1.09000 * 109.46533 * 299.99405 * 3 2 1 31 31 H 1.09002 * 109.47296 * 304.99699 * 4 3 2 32 32 H 1.09002 * 109.47107 * 185.00344 * 4 3 2 33 33 H 1.09000 * 109.47005 * 30.00084 * 6 5 4 34 34 H 1.09006 * 109.47066 * 149.99777 * 6 5 4 35 35 H 1.08997 * 109.47501 * 185.00138 * 7 6 5 36 36 H 1.09000 * 109.47242 * 304.99921 * 7 6 5 37 37 H 0.96697 * 114.00208 * 180.02562 * 8 7 6 38 38 H 0.96993 * 120.00038 * 5.80285 * 11 9 5 39 39 H 1.08005 * 120.25674 * 359.97438 * 13 12 11 40 40 H 1.08000 * 120.66499 * 179.97438 * 14 13 12 41 41 H 1.08001 * 120.43132 * 180.26525 * 15 14 13 42 42 H 0.97001 * 119.99902 * 354.82737 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2526 6 6 4.1052 -0.8922 -1.3426 7 6 5.5222 -1.3040 -0.9387 8 8 5.7351 -0.9900 0.4390 9 6 4.2615 1.3337 -2.3218 10 8 4.1544 2.5423 -2.2470 11 7 4.6670 0.7630 -3.4735 12 6 5.0777 1.5603 -4.5387 13 6 5.4450 2.8875 -4.3049 14 6 5.8531 3.6801 -5.3668 15 6 5.8893 3.1252 -6.6336 16 6 5.5020 1.7848 -6.8049 17 6 5.5281 1.2056 -8.0939 18 1 5.9500 1.7534 -8.9236 19 6 5.0071 -0.0784 -8.2952 20 7 5.0655 -0.6293 -9.4795 21 14 4.2287 -1.0042 -6.8718 22 1 3.7572 -2.3312 -7.3431 23 1 5.2329 -1.1895 -5.7936 24 1 3.0767 -0.2278 -6.3472 25 7 5.1145 1.0526 -5.7555 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6885 1.8464 0.8899 30 1 1.6886 1.8462 -0.8901 31 1 3.8514 0.5682 0.8410 32 1 3.9785 2.1765 0.0890 33 1 3.3853 -1.3630 -0.6732 34 1 3.9120 -1.2116 -2.3667 35 1 5.6461 -2.3763 -1.0902 36 1 6.2456 -0.7648 -1.5502 37 1 6.6151 -1.2240 0.7644 38 1 4.6727 -0.2030 -3.5604 39 1 5.4106 3.2936 -3.3046 40 1 6.1408 4.7088 -5.2076 41 1 6.2067 3.7155 -7.4805 42 1 5.4009 -0.1212 -10.2347 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881151427.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:23 Heat of formation + Delta-G solvation = -106.461795 kcal Electronic energy + Delta-G solvation = -26335.595005 eV Core-core repulsion = 22508.288501 eV Total energy + Delta-G solvation = -3827.306504 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.03239 -40.29749 -38.84462 -38.05311 -36.40604 -36.13964 -35.35027 -32.99856 -32.03253 -31.04849 -29.41594 -27.34335 -27.06449 -24.89264 -23.98345 -23.64213 -22.92132 -21.03679 -20.18406 -19.58381 -18.46557 -18.16561 -17.68091 -17.24099 -16.93231 -16.73063 -16.59443 -16.12539 -15.90761 -15.70675 -15.42325 -15.01929 -14.79993 -14.50158 -14.38975 -14.22381 -13.80573 -13.59333 -13.38532 -13.13278 -12.83098 -12.77282 -12.66325 -12.41031 -12.25197 -11.99128 -11.78381 -11.62242 -11.16205 -11.03205 -10.86304 -10.61831 -10.40902 -9.84442 -9.70933 -9.26746 -9.13840 -6.81483 0.58856 0.74994 1.33514 1.55139 1.67971 1.96130 2.03395 2.43286 2.65072 2.68746 2.86407 3.34251 3.56678 4.01964 4.02224 4.10578 4.19335 4.25189 4.33410 4.40321 4.45534 4.54132 4.55408 4.58949 4.64465 4.68236 4.70747 4.80324 4.84949 4.92809 4.96403 5.29765 5.36712 5.44457 5.49601 5.62948 5.80594 5.89671 6.01027 6.20578 6.41100 6.56414 6.71957 6.91525 7.32778 7.50537 7.95511 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.014894 B = 0.004425 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.481458 B = 6326.118100 C = 6715.864735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.046 3.954 4 C 0.142 3.858 5 N -0.602 5.602 6 C 0.102 3.898 7 C 0.060 3.940 8 O -0.579 6.579 9 C 0.707 3.293 10 O -0.594 6.594 11 N -0.665 5.665 12 C 0.395 3.605 13 C -0.306 4.306 14 C -0.026 4.026 15 C -0.294 4.294 16 C 0.260 3.740 17 C -0.509 4.509 18 H 0.069 0.931 19 C 0.016 3.984 20 N -0.830 5.830 21 Si 1.187 2.813 22 H -0.327 1.327 23 H -0.271 1.271 24 H -0.305 1.305 25 N -0.614 5.614 26 H 0.032 0.968 27 H 0.098 0.902 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.030 0.970 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.034 0.966 37 H 0.395 0.605 38 H 0.410 0.590 39 H 0.149 0.851 40 H 0.144 0.856 41 H 0.115 0.885 42 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.531 -2.947 21.895 22.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.031 4.031 4 C 0.020 3.980 5 N -0.337 5.337 6 C -0.021 4.021 7 C -0.019 4.019 8 O -0.387 6.387 9 C 0.409 3.591 10 O -0.473 6.473 11 N -0.315 5.315 12 C 0.163 3.837 13 C -0.330 4.330 14 C -0.050 4.050 15 C -0.316 4.316 16 C 0.135 3.865 17 C -0.542 4.542 18 H 0.088 0.912 19 C -0.200 4.200 20 N -0.454 5.454 21 Si 1.020 2.980 22 H -0.261 1.261 23 H -0.199 1.199 24 H -0.234 1.234 25 N -0.340 5.340 26 H 0.050 0.950 27 H 0.117 0.883 28 H 0.073 0.927 29 H 0.100 0.900 30 H 0.048 0.952 31 H 0.129 0.871 32 H 0.109 0.891 33 H 0.131 0.869 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.052 0.948 37 H 0.245 0.755 38 H 0.249 0.751 39 H 0.166 0.834 40 H 0.162 0.838 41 H 0.133 0.867 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.958 -4.295 22.127 23.079 hybrid contribution 1.400 2.126 -1.365 2.888 sum -3.558 -2.169 20.762 21.176 Atomic orbital electron populations 1.22869 0.80051 1.03683 1.00264 1.87822 1.20889 1.27924 1.95512 1.23028 0.94389 0.84986 1.00735 1.21525 0.91647 1.00182 0.84673 1.47059 1.69214 1.06853 1.10577 1.21905 0.97891 0.79171 1.03084 1.22637 0.95838 1.00260 0.83145 1.86406 1.39766 1.87343 1.25168 1.15865 0.77886 0.85160 0.80209 1.90786 1.60042 1.13200 1.83257 1.42475 1.67262 1.10331 1.11414 1.18116 0.91224 0.89105 0.85278 1.21869 1.15163 0.94221 1.01751 1.21327 0.92818 0.99361 0.91469 1.21751 1.15417 0.96286 0.98127 1.18434 0.87674 0.89863 0.90528 1.20715 1.36514 1.02953 0.93975 0.91232 1.28490 0.92180 0.96206 1.03165 1.70664 1.34180 1.39076 1.01443 0.81412 0.75595 0.70761 0.70195 1.26060 1.19864 1.23405 1.65852 1.30901 1.38471 0.98785 0.94960 0.88344 0.92675 0.90036 0.95178 0.87094 0.89054 0.86938 0.89531 0.89857 0.94767 0.75524 0.75109 0.83359 0.83837 0.86659 0.90817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.69 16 2 O -0.40 -8.49 9.53 -148.98 -1.42 -9.90 16 3 C 0.05 0.98 6.28 71.98 0.45 1.43 16 4 C 0.14 3.14 5.63 86.38 0.49 3.63 16 5 N -0.60 -15.71 2.40 -839.85 -2.02 -17.73 16 6 C 0.10 2.10 5.45 86.38 0.47 2.57 16 7 C 0.06 1.04 7.39 71.98 0.53 1.57 16 8 O -0.58 -9.36 12.48 -148.98 -1.86 -11.22 16 9 C 0.71 24.62 8.12 179.05 1.45 26.07 16 10 O -0.59 -23.95 12.72 -3.93 -0.05 -24.00 16 11 N -0.67 -25.11 5.29 -322.13 -1.70 -26.81 16 12 C 0.39 18.14 7.51 133.26 1.00 19.14 16 13 C -0.31 -13.58 8.83 22.72 0.20 -13.38 16 14 C -0.03 -1.09 10.15 22.39 0.23 -0.86 16 15 C -0.29 -13.99 9.83 22.87 0.22 -13.76 16 16 C 0.26 13.88 6.39 40.19 0.26 14.14 16 17 C -0.51 -28.69 9.58 23.47 0.22 -28.46 16 18 H 0.07 3.97 8.05 -2.91 -0.02 3.95 16 19 C 0.02 0.89 5.52 85.29 0.47 1.36 16 20 N -0.83 -46.45 13.65 21.84 0.30 -46.15 16 21 Si 1.19 57.33 25.53 68.60 1.75 59.08 16 22 H -0.33 -15.30 7.11 99.48 0.71 -14.59 16 23 H -0.27 -12.25 6.70 99.48 0.67 -11.59 16 24 H -0.30 -15.15 7.10 99.48 0.71 -14.45 16 25 N -0.61 -31.22 4.58 -186.37 -0.85 -32.08 16 26 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 30 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.11 2.14 7.11 -2.39 -0.02 2.12 16 32 H 0.09 2.15 7.42 -2.39 -0.02 2.14 16 33 H 0.11 2.13 7.11 -2.39 -0.02 2.11 16 34 H 0.09 1.77 6.29 -2.38 -0.01 1.75 16 35 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.40 3.23 9.12 -74.06 -0.68 2.55 16 38 H 0.41 13.72 6.52 -92.71 -0.60 13.12 16 39 H 0.15 6.47 5.33 -3.18 -0.02 6.46 16 40 H 0.14 4.95 8.06 -2.91 -0.02 4.93 16 41 H 0.12 5.14 8.06 -2.91 -0.02 5.11 16 42 H 0.28 15.22 8.72 -92.71 -0.81 14.41 16 Total: -1.00 -70.52 347.56 1.10 -69.43 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: -0.30 Total: 24.23 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: 7.25 Total: 15.14 kcal Atomic # 7 Polarization: -118.48 SS G_CDS: -4.28 Total: -122.76 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -3.33 Total: -45.12 kcal Atomic # 14 Polarization: 57.33 SS G_CDS: 1.75 Total: 59.08 kcal Total: -70.52 1.10 -69.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881151427.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.034 kcal (2) G-P(sol) polarization free energy of solvation -70.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds