Wall clock time and date at job start Fri Apr 10 2020 18:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45198 * 109.47076 * 2 1 4 4 C 1.34233 * 116.99873 * 180.02562 * 3 2 1 5 5 O 1.20823 * 119.99935 * 359.97438 * 4 3 2 6 6 C 1.50695 * 119.99875 * 179.97438 * 4 3 2 7 7 N 1.46501 * 109.47119 * 179.97438 * 6 4 3 8 8 C 1.46502 * 120.00050 * 269.99901 * 7 6 4 9 9 C 1.34775 * 120.00295 * 90.00066 * 7 6 4 10 10 O 1.21611 * 119.99497 * 3.91014 * 9 7 6 11 11 C 1.47432 * 120.00338 * 183.91509 * 9 7 6 12 12 C 1.41288 * 126.41215 * 328.06987 * 11 9 7 13 13 N 1.30445 * 108.01858 * 179.70470 * 12 11 9 14 14 N 1.39934 * 108.90035 * 0.40805 * 13 12 11 15 15 C 1.46503 * 125.75611 * 179.84884 * 14 13 12 16 16 C 1.50693 * 109.47225 * 269.68774 * 15 14 13 17 17 H 1.08007 * 120.00098 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00265 * 179.72048 * 16 15 14 19 19 N 1.31511 * 119.99813 * 0.28234 * 18 16 15 20 20 Si 1.86800 * 120.00215 * 180.27722 * 18 16 15 21 21 H 1.48502 * 109.46848 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.46954 * 120.00291 * 20 18 16 23 23 H 1.48500 * 109.47220 * 240.00512 * 20 18 16 24 24 C 1.34258 * 108.49184 * 359.57912 * 14 13 12 25 25 C 1.50701 * 126.29603 * 180.21708 * 24 14 13 26 26 H 1.08996 * 109.47035 * 60.00153 * 1 2 3 27 27 H 1.08997 * 109.47097 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46727 * 300.00362 * 1 2 3 29 29 H 1.08999 * 109.47135 * 239.99396 * 2 1 3 30 30 H 1.09004 * 109.47196 * 119.99634 * 2 1 3 31 31 H 1.09001 * 109.47130 * 59.99856 * 6 4 3 32 32 H 1.08998 * 109.47392 * 299.99019 * 6 4 3 33 33 H 1.08998 * 109.47416 * 275.63131 * 8 7 6 34 34 H 1.08998 * 109.47070 * 35.63320 * 8 7 6 35 35 H 1.09004 * 109.47001 * 155.62910 * 8 7 6 36 36 H 1.07997 * 125.98989 * 359.93037 * 12 11 9 37 37 H 1.08998 * 109.47018 * 149.68521 * 15 14 13 38 38 H 1.09006 * 109.47098 * 29.68933 * 15 14 13 39 39 H 0.96999 * 120.00340 * 179.97438 * 19 18 16 40 40 H 1.09008 * 109.46790 * 90.00431 * 25 24 14 41 41 H 1.08997 * 109.47339 * 210.00454 * 25 24 14 42 42 H 1.08996 * 109.46930 * 330.01088 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9373 -0.0012 7 7 5.3838 2.8607 -0.0010 8 6 6.1152 2.8230 1.2677 9 6 6.0568 2.8249 -1.1681 10 8 5.4555 2.9278 -2.2202 11 6 7.5220 2.6608 -1.1695 12 6 8.4196 3.1324 -0.1855 13 7 9.6259 2.7846 -0.5399 14 7 9.5598 2.0925 -1.7543 15 6 10.7009 1.5381 -2.4870 16 6 11.2293 2.5702 -3.4495 17 1 10.7621 3.5422 -3.5092 18 6 12.3131 2.2760 -4.2494 19 7 12.8823 1.0927 -4.1764 20 14 12.9728 3.5581 -5.4370 21 1 12.1627 4.7979 -5.3272 22 1 14.3877 3.8607 -5.1028 23 1 12.8928 3.0353 -6.8246 24 6 8.2736 2.0169 -2.1319 25 6 7.7472 1.3521 -3.3777 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.5851 3.4698 0.8888 32 1 3.5847 3.4692 -0.8912 33 1 6.2630 3.8395 1.6324 34 1 5.5429 2.2538 2.0003 35 1 7.0841 2.3475 1.1146 36 1 8.1533 3.6810 0.7057 37 1 10.3829 0.6545 -3.0402 38 1 11.4858 1.2627 -1.7825 39 1 13.6445 0.8856 -4.7393 40 1 7.5213 0.3073 -3.1642 41 1 6.8402 1.8603 -3.7052 42 1 8.4992 1.4078 -4.1646 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889082703.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:27 Heat of formation + Delta-G solvation = -64.044612 kcal Electronic energy + Delta-G solvation = -25517.617157 eV Core-core repulsion = 21692.149999 eV Total energy + Delta-G solvation = -3825.467157 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.46388 -41.60488 -40.17359 -37.76230 -36.53469 -35.78579 -33.88606 -32.96196 -32.65939 -30.60138 -28.84517 -28.36459 -27.24361 -25.44377 -24.32529 -23.05549 -22.21698 -21.19769 -19.91637 -18.94890 -18.86043 -18.34094 -17.74797 -17.57847 -16.95725 -16.83794 -16.35728 -16.20210 -15.58793 -15.28717 -15.09344 -14.69343 -14.42516 -14.30173 -14.05721 -13.81543 -13.72355 -13.61072 -13.58263 -13.30230 -13.18073 -12.98653 -12.81205 -12.74909 -12.64360 -12.51008 -12.34064 -11.83509 -11.79596 -11.72129 -11.53975 -10.93211 -10.77676 -10.25164 -9.87683 -9.45554 -8.39154 -6.55647 0.65382 1.13754 1.25842 1.35590 1.36725 1.42541 1.50365 1.70352 2.16278 2.31878 2.35717 2.92719 3.64165 3.69720 3.72839 3.95527 3.99855 4.08535 4.13482 4.24135 4.25833 4.33828 4.40899 4.49079 4.55369 4.74989 4.76522 4.83199 4.88204 4.93097 4.96207 4.99383 5.11020 5.14680 5.36838 5.45284 5.48220 5.65673 5.73544 6.02545 6.23727 6.53817 6.69401 6.81507 7.13597 7.15766 8.68959 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.026523 B = 0.002873 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.445836 B = 9743.613723 C =10089.560457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.053 3.947 3 O -0.358 6.358 4 C 0.442 3.558 5 O -0.538 6.538 6 C 0.127 3.873 7 N -0.598 5.598 8 C 0.062 3.938 9 C 0.610 3.390 10 O -0.578 6.578 11 C -0.329 4.329 12 C 0.078 3.922 13 N -0.334 5.334 14 N -0.337 5.337 15 C 0.268 3.732 16 C -0.555 4.555 17 H 0.051 0.949 18 C 0.023 3.977 19 N -0.917 5.917 20 Si 0.973 3.027 21 H -0.273 1.273 22 H -0.272 1.272 23 H -0.268 1.268 24 C 0.140 3.860 25 C -0.094 4.094 26 H 0.067 0.933 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.172 0.828 32 H 0.128 0.872 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.232 0.768 37 H 0.048 0.952 38 H 0.033 0.967 39 H 0.275 0.725 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.886 2.012 12.032 25.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.020 4.020 3 O -0.274 6.274 4 C 0.285 3.715 5 O -0.427 6.427 6 C 0.003 3.997 7 N -0.330 5.330 8 C -0.079 4.079 9 C 0.401 3.599 10 O -0.458 6.458 11 C -0.344 4.344 12 C -0.108 4.108 13 N -0.154 5.154 14 N -0.114 5.114 15 C 0.149 3.851 16 C -0.593 4.593 17 H 0.069 0.931 18 C -0.178 4.178 19 N -0.555 5.555 20 Si 0.796 3.204 21 H -0.198 1.198 22 H -0.197 1.197 23 H -0.193 1.193 24 C 0.005 3.995 25 C -0.152 4.152 26 H 0.086 0.914 27 H 0.115 0.885 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.190 0.810 32 H 0.146 0.854 33 H 0.118 0.882 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.248 0.752 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.114 0.886 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -21.453 1.600 11.688 24.482 hybrid contribution 0.109 -0.167 -0.920 0.941 sum -21.344 1.433 10.768 23.949 Atomic orbital electron populations 1.21813 0.90059 1.04308 1.03938 1.23249 0.97271 0.79437 1.02091 1.86495 1.23715 1.33460 1.83705 1.25035 0.80881 0.94175 0.71426 1.90692 1.61292 1.44360 1.46366 1.21175 0.79514 0.89479 1.09536 1.47307 1.05396 1.73224 1.07031 1.22486 0.97967 1.04166 0.83277 1.17307 0.85531 0.73860 0.83176 1.90678 1.70399 1.52291 1.32450 1.19822 0.94031 1.19129 1.01443 1.24742 0.88202 0.98519 0.99362 1.77091 1.23614 1.15866 0.98848 1.49086 1.06313 1.39841 1.16195 1.19364 0.81384 0.94136 0.90210 1.21419 1.15975 0.99840 1.22077 0.93098 1.25742 0.95757 0.97868 0.98436 1.70001 1.23060 1.22019 1.40382 0.85283 0.78227 0.78478 0.78368 1.19772 1.19702 1.19329 1.21838 0.84611 0.96494 0.96586 1.20577 1.02198 1.00488 0.91970 0.91390 0.88492 0.90584 0.92565 0.91226 0.81038 0.85393 0.88189 0.89886 0.90632 0.75247 0.93389 0.94882 0.91627 0.89420 0.88554 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 10.29 71.98 0.74 -0.70 16 2 C 0.05 0.90 6.19 71.98 0.45 1.35 16 3 O -0.36 -7.10 10.22 -51.45 -0.53 -7.63 16 4 C 0.44 10.38 8.02 71.23 0.57 10.95 16 5 O -0.54 -17.09 16.18 21.97 0.36 -16.74 16 6 C 0.13 2.26 6.05 85.63 0.52 2.78 16 7 N -0.60 -14.14 2.36 -855.04 -2.02 -16.16 16 8 C 0.06 1.03 9.09 127.77 1.16 2.19 16 9 C 0.61 20.56 7.52 86.67 0.65 21.21 16 10 O -0.58 -22.54 14.90 -4.07 -0.06 -22.60 16 11 C -0.33 -12.32 5.54 -20.15 -0.11 -12.43 16 12 C 0.08 2.64 9.57 85.65 0.82 3.46 16 13 N -0.33 -14.61 12.50 -56.28 -0.70 -15.31 16 14 N -0.34 -16.03 3.56 -336.70 -1.20 -17.23 16 15 C 0.27 14.14 5.78 85.63 0.50 14.63 16 16 C -0.56 -31.19 9.39 25.60 0.24 -30.95 16 17 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 18 C 0.02 1.28 5.46 84.66 0.46 1.74 16 19 N -0.92 -51.90 13.29 21.45 0.28 -51.61 16 20 Si 0.97 43.34 29.54 68.60 2.03 45.37 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 23 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 24 C 0.14 6.04 7.00 42.14 0.29 6.33 16 25 C -0.09 -3.67 9.66 71.24 0.69 -2.98 16 26 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 1.10 8.13 -2.39 -0.02 1.08 16 30 H 0.07 1.15 8.13 -2.38 -0.02 1.13 16 31 H 0.17 1.24 8.07 -2.39 -0.02 1.22 16 32 H 0.13 2.37 7.37 -2.39 -0.02 2.35 16 33 H 0.10 0.94 7.86 -2.39 -0.02 0.92 16 34 H 0.08 1.10 8.11 -2.39 -0.02 1.08 16 35 H 0.08 1.59 4.71 -2.38 -0.01 1.58 16 36 H 0.23 5.15 6.11 -2.91 -0.02 5.13 16 37 H 0.05 2.55 7.62 -2.39 -0.02 2.53 16 38 H 0.03 1.87 8.14 -2.38 -0.02 1.85 16 39 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 40 H 0.09 3.10 8.14 -2.38 -0.02 3.08 16 41 H 0.10 3.69 6.50 -2.39 -0.02 3.67 16 42 H 0.07 3.06 7.70 -2.39 -0.02 3.04 16 Total: -1.00 -76.49 360.58 6.17 -70.31 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 1.04 Total: 14.01 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: 6.98 Total: 17.59 kcal Atomic # 7 Polarization: -96.68 SS G_CDS: -3.64 Total: -100.32 kcal Atomic # 8 Polarization: -46.73 SS G_CDS: -0.23 Total: -46.96 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -76.49 6.17 -70.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889082703.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.270 kcal (2) G-P(sol) polarization free energy of solvation -76.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds