Wall clock time and date at job start Fri Apr 10 2020 18:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36928 * 125.63263 * 2 1 4 4 C 1.35269 * 107.87207 * 180.13613 * 3 2 1 5 5 C 1.46460 * 126.39166 * 179.89861 * 4 3 2 6 6 O 1.21632 * 120.00029 * 179.68877 * 5 4 3 7 7 O 1.34901 * 120.00526 * 359.68760 * 5 4 3 8 8 C 1.45196 * 117.00599 * 180.02562 * 7 5 4 9 9 C 1.53034 * 109.46406 * 150.00025 * 8 7 5 10 10 C 1.53194 * 109.31631 * 181.38762 * 9 8 7 11 11 N 1.46928 * 108.88836 * 305.29172 * 10 9 8 12 12 C 1.36934 * 120.63084 * 233.67060 * 11 10 9 13 13 H 1.07993 * 120.00334 * 27.39912 * 12 11 10 14 14 C 1.38820 * 119.99795 * 207.39526 * 12 11 10 15 15 N 1.31613 * 120.00097 * 17.26991 * 14 12 11 16 16 Si 1.86807 * 119.99669 * 197.26997 * 14 12 11 17 17 H 1.48498 * 109.47115 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46875 * 120.00003 * 16 14 12 19 19 H 1.48497 * 109.47091 * 240.00248 * 16 14 12 20 20 C 1.47211 * 118.55611 * 53.54535 * 11 10 9 21 21 C 1.53045 * 109.46060 * 270.07049 * 8 7 5 22 22 N 1.39871 * 107.21252 * 359.63742 * 4 3 2 23 23 C 1.46490 * 126.18972 * 180.19018 * 22 4 3 24 24 C 1.34613 * 125.64006 * 179.72459 * 2 1 3 25 25 O 1.21725 * 125.71613 * 0.02562 * 24 2 1 26 26 H 1.09002 * 109.47539 * 270.26923 * 1 2 3 27 27 H 1.09003 * 109.47191 * 30.27281 * 1 2 3 28 28 H 1.09003 * 109.46658 * 150.26923 * 1 2 3 29 29 H 1.08007 * 126.07071 * 0.02562 * 3 2 1 30 30 H 1.08998 * 109.44693 * 30.03200 * 8 7 5 31 31 H 1.08997 * 109.49513 * 61.43633 * 9 8 7 32 32 H 1.09004 * 109.49828 * 301.33860 * 9 8 7 33 33 H 1.09000 * 109.58642 * 65.14938 * 10 9 8 34 34 H 1.09000 * 109.58560 * 185.43802 * 10 9 8 35 35 H 0.97008 * 119.99917 * 179.97438 * 15 14 12 36 36 H 1.08998 * 109.53679 * 186.67414 * 20 11 10 37 37 H 1.08996 * 109.68174 * 66.35764 * 20 11 10 38 38 H 1.09000 * 109.49621 * 298.56433 * 21 8 7 39 39 H 1.09005 * 109.49792 * 58.66048 * 21 8 7 40 40 H 1.09002 * 109.47080 * 90.00040 * 23 22 4 41 41 H 1.09002 * 109.47874 * 209.99759 * 23 22 4 42 42 H 1.08999 * 109.47668 * 330.00068 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2627 1.1129 0.0000 4 6 3.5509 0.7003 -0.0031 5 6 4.7381 1.5580 -0.0063 6 8 5.8480 1.0604 -0.0031 7 8 4.6008 2.9000 -0.0127 8 6 5.8206 3.6876 -0.0161 9 6 5.5714 5.0105 -0.7439 10 6 6.8693 5.8236 -0.7758 11 7 7.3676 5.9783 0.5977 12 6 7.6482 7.2200 1.1023 13 1 7.1279 8.0872 0.7234 14 6 8.6016 7.3640 2.1010 15 7 9.4674 6.3992 2.3284 16 14 8.6555 8.9273 3.1222 17 1 7.5825 9.8499 2.6720 18 1 8.4497 8.5907 4.5539 19 1 9.9767 9.5838 2.9530 20 6 7.5552 4.7708 1.4184 21 6 6.2495 3.9695 1.4257 22 7 3.5376 -0.6983 0.0035 23 6 4.7115 -1.5746 0.0069 24 6 2.2494 -1.0940 0.0053 25 8 1.8602 -2.2473 0.0104 26 1 -0.3634 0.0048 1.0276 27 1 -0.3634 0.8875 -0.5181 28 1 -0.3633 -0.8924 -0.5097 29 1 1.9236 2.1384 0.0004 30 1 6.6082 3.1344 -0.5276 31 1 4.8012 5.5752 -0.2186 32 1 5.2434 4.8086 -1.7637 33 1 7.6130 5.3013 -1.3777 34 1 6.6747 6.8057 -1.2068 35 1 10.1338 6.5001 3.0261 36 1 7.8125 5.0591 2.4376 37 1 8.3552 4.1617 0.9978 38 1 5.4728 4.5440 1.9305 39 1 6.4042 3.0266 1.9503 40 1 5.0033 -1.7871 1.0355 41 1 4.4702 -2.5076 -0.5023 42 1 5.5348 -1.0811 -0.5096 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892863768.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:34 Heat of formation + Delta-G solvation = -38.482174 kcal Electronic energy + Delta-G solvation = -25814.161794 eV Core-core repulsion = 21989.803107 eV Total energy + Delta-G solvation = -3824.358687 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.72055 -40.19469 -37.60036 -37.03293 -36.07783 -35.42265 -32.79615 -31.07797 -30.30842 -29.75059 -28.44786 -26.42408 -25.32713 -23.90299 -22.34622 -22.17140 -21.05979 -20.54324 -19.39409 -18.05771 -17.27233 -17.12064 -16.95372 -16.32599 -15.60611 -15.38583 -15.30840 -14.87515 -14.39478 -14.35874 -13.98717 -13.65010 -13.41787 -13.18260 -13.00796 -12.93197 -12.84711 -12.56459 -12.46968 -11.83337 -11.59338 -11.33617 -11.20626 -10.92019 -10.79094 -10.71761 -10.42191 -10.38811 -10.25557 -10.21364 -9.95225 -9.73254 -9.47970 -8.53515 -8.11802 -6.78500 -5.85234 -3.27745 0.96528 1.81699 2.37190 2.54430 2.89596 3.33901 3.38577 3.42449 3.44406 4.30206 4.44488 4.66737 4.78848 4.83417 4.87759 5.02689 5.16125 5.17333 5.24531 5.32590 5.35811 5.46976 5.51878 5.63634 5.67691 5.94742 6.00101 6.13878 6.16743 6.33157 6.38731 6.45488 6.53664 6.63686 6.75782 6.86228 6.89726 7.25914 7.56892 7.74277 7.78208 7.94875 8.37041 9.13063 9.76317 10.32481 11.23866 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.028723 B = 0.002842 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.600321 B = 9849.853756 C =10130.992452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.526 5.526 3 C 0.092 3.908 4 C -0.030 4.030 5 C 0.540 3.460 6 O -0.504 6.504 7 O -0.349 6.349 8 C 0.102 3.898 9 C -0.127 4.127 10 C 0.148 3.852 11 N -0.593 5.593 12 C -0.255 4.255 13 H 0.069 0.931 14 C 0.003 3.997 15 N -0.901 5.901 16 Si 0.903 3.097 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.290 1.290 20 C 0.173 3.827 21 C -0.154 4.154 22 N -0.511 5.511 23 C 0.098 3.902 24 C 0.651 3.349 25 O -0.564 6.564 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.202 0.798 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.022 0.978 34 H 0.064 0.936 35 H 0.255 0.745 36 H 0.094 0.906 37 H 0.023 0.977 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.208 -10.496 -5.624 20.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.242 5.242 3 C -0.038 4.038 4 C -0.136 4.136 5 C 0.383 3.617 6 O -0.393 6.393 7 O -0.265 6.265 8 C 0.048 3.952 9 C -0.167 4.167 10 C 0.021 3.979 11 N -0.315 5.315 12 C -0.384 4.384 13 H 0.086 0.914 14 C -0.196 4.196 15 N -0.546 5.546 16 Si 0.733 3.267 17 H -0.202 1.202 18 H -0.215 1.215 19 H -0.217 1.217 20 C 0.047 3.953 21 C -0.193 4.193 22 N -0.232 5.232 23 C -0.043 4.043 24 C 0.353 3.647 25 O -0.442 6.442 26 H 0.093 0.907 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.219 0.781 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.039 0.961 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.113 0.887 37 H 0.041 0.959 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -15.983 -11.486 -5.500 20.436 hybrid contribution 0.244 0.736 0.661 1.019 sum -15.739 -10.750 -4.840 19.665 Atomic orbital electron populations 1.21902 0.74298 1.04800 1.03727 1.45066 1.08243 1.06183 1.64714 1.22348 0.87592 0.93671 1.00229 1.18545 0.92638 0.83385 1.19050 1.19252 0.86685 0.82230 0.73522 1.90876 1.26810 1.75360 1.46249 1.86571 1.40236 1.16310 1.83354 1.23032 0.82896 0.90200 0.99036 1.22253 1.01616 0.93926 0.98890 1.20888 0.91406 0.97404 0.88235 1.44202 1.76207 1.03455 1.07680 1.19222 1.15858 0.85255 1.18104 0.91371 1.25065 0.95313 0.97688 1.01546 1.70032 1.17696 1.33425 1.33405 0.86214 0.77436 0.82815 0.80242 1.20188 1.21517 1.21689 1.20825 0.89831 0.85839 0.98761 1.22682 1.02219 1.00581 0.93843 1.45178 1.07180 1.04519 1.66332 1.21925 0.85190 0.93507 1.03683 1.16072 0.80676 0.84902 0.83018 1.91041 1.76415 1.16266 1.60468 0.90692 0.89182 0.89265 0.78142 0.90043 0.91000 0.92114 0.96051 0.91742 0.93541 0.88748 0.95866 0.91564 0.92649 0.91130 0.89829 0.88232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.52 11.01 59.85 0.66 1.18 16 2 N -0.53 -5.08 3.12 -128.77 -0.40 -5.49 16 3 C 0.09 0.84 11.20 -16.33 -0.18 0.65 16 4 C -0.03 -0.37 6.88 -81.94 -0.56 -0.93 16 5 C 0.54 7.88 7.90 34.04 0.27 8.15 16 6 O -0.50 -8.57 14.10 -19.37 -0.27 -8.85 16 7 O -0.35 -5.13 9.69 -41.04 -0.40 -5.53 16 8 C 0.10 1.73 2.42 -26.69 -0.06 1.67 16 9 C -0.13 -2.07 5.74 -26.61 -0.15 -2.23 16 10 C 0.15 2.91 6.51 -3.71 -0.02 2.88 16 11 N -0.59 -14.32 3.01 -172.09 -0.52 -14.84 16 12 C -0.25 -6.76 9.59 -15.06 -0.14 -6.90 16 13 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 14 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 15 N -0.90 -25.66 11.18 55.49 0.62 -25.04 16 16 Si 0.90 21.13 29.59 -169.99 -5.03 16.10 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 20 C 0.17 4.05 5.33 -3.55 -0.02 4.03 16 21 C -0.15 -2.94 5.72 -26.61 -0.15 -3.09 16 22 N -0.51 -6.59 3.21 -124.86 -0.40 -6.99 16 23 C 0.10 1.10 10.57 59.84 0.63 1.74 16 24 C 0.65 8.64 8.49 -87.08 -0.74 7.90 16 25 O -0.56 -9.07 17.58 5.17 0.09 -8.98 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.09 0.53 8.04 -51.93 -0.42 0.11 16 29 H 0.20 1.14 8.06 -52.48 -0.42 0.72 16 30 H 0.08 1.48 7.16 -51.93 -0.37 1.11 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 1.22 7.93 -51.93 -0.41 0.80 16 35 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.09 2.47 6.04 -51.93 -0.31 2.16 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 42 H 0.10 1.16 6.45 -51.93 -0.34 0.83 16 LS Contribution 350.31 15.07 5.28 5.28 Total: -1.00 -33.41 350.31 -7.64 -41.06 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -6.05 Total: -1.76 kcal Atomic # 6 Polarization: 15.59 SS G_CDS: -0.57 Total: 15.02 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: -0.70 Total: -52.35 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.58 Total: -23.35 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.41 -7.64 -41.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892863768.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.574 kcal (2) G-P(sol) polarization free energy of solvation -33.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds