Wall clock time and date at job start Fri Apr 10 2020 18:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36928 * 125.63263 * 2 1 4 4 C 1.35269 * 107.87207 * 180.13613 * 3 2 1 5 5 C 1.46460 * 126.39166 * 179.89861 * 4 3 2 6 6 O 1.21632 * 120.00029 * 179.68877 * 5 4 3 7 7 O 1.34901 * 120.00526 * 359.68760 * 5 4 3 8 8 C 1.45196 * 117.00599 * 180.02562 * 7 5 4 9 9 C 1.53034 * 109.46406 * 150.00025 * 8 7 5 10 10 C 1.53194 * 109.31631 * 181.38762 * 9 8 7 11 11 N 1.46928 * 108.88836 * 305.29172 * 10 9 8 12 12 C 1.36934 * 120.63084 * 233.67060 * 11 10 9 13 13 H 1.07993 * 120.00334 * 27.39912 * 12 11 10 14 14 C 1.38820 * 119.99795 * 207.39526 * 12 11 10 15 15 N 1.31613 * 120.00097 * 17.26991 * 14 12 11 16 16 Si 1.86807 * 119.99669 * 197.26997 * 14 12 11 17 17 H 1.48498 * 109.47115 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46875 * 120.00003 * 16 14 12 19 19 H 1.48497 * 109.47091 * 240.00248 * 16 14 12 20 20 C 1.47211 * 118.55611 * 53.54535 * 11 10 9 21 21 C 1.53045 * 109.46060 * 270.07049 * 8 7 5 22 22 N 1.39871 * 107.21252 * 359.63742 * 4 3 2 23 23 C 1.46490 * 126.18972 * 180.19018 * 22 4 3 24 24 C 1.34613 * 125.64006 * 179.72459 * 2 1 3 25 25 O 1.21725 * 125.71613 * 0.02562 * 24 2 1 26 26 H 1.09002 * 109.47539 * 270.26923 * 1 2 3 27 27 H 1.09003 * 109.47191 * 30.27281 * 1 2 3 28 28 H 1.09003 * 109.46658 * 150.26923 * 1 2 3 29 29 H 1.08007 * 126.07071 * 0.02562 * 3 2 1 30 30 H 1.08998 * 109.44693 * 30.03200 * 8 7 5 31 31 H 1.08997 * 109.49513 * 61.43633 * 9 8 7 32 32 H 1.09004 * 109.49828 * 301.33860 * 9 8 7 33 33 H 1.09000 * 109.58642 * 65.14938 * 10 9 8 34 34 H 1.09000 * 109.58560 * 185.43802 * 10 9 8 35 35 H 0.97008 * 119.99917 * 179.97438 * 15 14 12 36 36 H 1.08998 * 109.53679 * 186.67414 * 20 11 10 37 37 H 1.08996 * 109.68174 * 66.35764 * 20 11 10 38 38 H 1.09000 * 109.49621 * 298.56433 * 21 8 7 39 39 H 1.09005 * 109.49792 * 58.66048 * 21 8 7 40 40 H 1.09002 * 109.47080 * 90.00040 * 23 22 4 41 41 H 1.09002 * 109.47874 * 209.99759 * 23 22 4 42 42 H 1.08999 * 109.47668 * 330.00068 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2627 1.1129 0.0000 4 6 3.5509 0.7003 -0.0031 5 6 4.7381 1.5580 -0.0063 6 8 5.8480 1.0604 -0.0031 7 8 4.6008 2.9000 -0.0127 8 6 5.8206 3.6876 -0.0161 9 6 5.5714 5.0105 -0.7439 10 6 6.8693 5.8236 -0.7758 11 7 7.3676 5.9783 0.5977 12 6 7.6482 7.2200 1.1023 13 1 7.1279 8.0872 0.7234 14 6 8.6016 7.3640 2.1010 15 7 9.4674 6.3992 2.3284 16 14 8.6555 8.9273 3.1222 17 1 7.5825 9.8499 2.6720 18 1 8.4497 8.5907 4.5539 19 1 9.9767 9.5838 2.9530 20 6 7.5552 4.7708 1.4184 21 6 6.2495 3.9695 1.4257 22 7 3.5376 -0.6983 0.0035 23 6 4.7115 -1.5746 0.0069 24 6 2.2494 -1.0940 0.0053 25 8 1.8602 -2.2473 0.0104 26 1 -0.3634 0.0048 1.0276 27 1 -0.3634 0.8875 -0.5181 28 1 -0.3633 -0.8924 -0.5097 29 1 1.9236 2.1384 0.0004 30 1 6.6082 3.1344 -0.5276 31 1 4.8012 5.5752 -0.2186 32 1 5.2434 4.8086 -1.7637 33 1 7.6130 5.3013 -1.3777 34 1 6.6747 6.8057 -1.2068 35 1 10.1338 6.5001 3.0261 36 1 7.8125 5.0591 2.4376 37 1 8.3552 4.1617 0.9978 38 1 5.4728 4.5440 1.9305 39 1 6.4042 3.0266 1.9503 40 1 5.0033 -1.7871 1.0355 41 1 4.4702 -2.5076 -0.5023 42 1 5.5348 -1.0811 -0.5096 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892863768.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:34 Heat of formation + Delta-G solvation = -58.612561 kcal Electronic energy + Delta-G solvation = -25815.034713 eV Core-core repulsion = 21989.803107 eV Total energy + Delta-G solvation = -3825.231606 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.61582 -41.41293 -39.06647 -38.10580 -37.37320 -36.36107 -34.58238 -32.27842 -31.72316 -31.34959 -29.34608 -27.28088 -26.98525 -25.04501 -23.92159 -23.63667 -22.13725 -21.54124 -20.97193 -19.13166 -18.80705 -18.28846 -18.01252 -17.46325 -16.85420 -16.76259 -16.30920 -16.20622 -15.67871 -15.36713 -15.18404 -15.07238 -14.88226 -14.54021 -14.41189 -14.08296 -14.00599 -13.48331 -13.28130 -13.22290 -13.06075 -12.85935 -12.64608 -12.60855 -12.33594 -12.07717 -12.01329 -11.89235 -11.78092 -11.58647 -11.36176 -11.06736 -10.99877 -10.54486 -9.03289 -8.73907 -7.87885 -5.32900 0.04925 0.93855 1.37430 1.49232 1.51386 1.58581 1.61651 1.85406 2.46081 2.52745 3.28818 3.43546 3.63033 3.81822 3.87733 3.91720 3.92560 4.19089 4.21501 4.32193 4.35110 4.43884 4.52511 4.62296 4.63585 4.75367 4.80105 4.82244 4.91376 4.94367 5.02648 5.12181 5.17793 5.31041 5.38463 5.50067 5.53787 5.66010 5.69501 6.01789 6.38373 6.64616 6.98446 7.12847 7.83119 8.35578 9.19932 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.028723 B = 0.002842 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.600321 B = 9849.853756 C =10130.992452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.516 5.516 3 C 0.141 3.859 4 C -0.073 4.073 5 C 0.543 3.457 6 O -0.537 6.537 7 O -0.333 6.333 8 C 0.111 3.889 9 C -0.112 4.112 10 C 0.141 3.859 11 N -0.611 5.611 12 C -0.259 4.259 13 H 0.076 0.924 14 C -0.054 4.054 15 N -0.938 5.938 16 Si 0.968 3.032 17 H -0.262 1.262 18 H -0.292 1.292 19 H -0.295 1.295 20 C 0.182 3.818 21 C -0.140 4.140 22 N -0.518 5.518 23 C 0.097 3.903 24 C 0.637 3.363 25 O -0.601 6.601 26 H 0.088 0.912 27 H 0.129 0.871 28 H 0.082 0.918 29 H 0.247 0.753 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.016 0.984 34 H 0.074 0.926 35 H 0.249 0.751 36 H 0.061 0.939 37 H -0.005 1.005 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.450 -9.240 -6.385 22.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.231 5.231 3 C 0.010 3.990 4 C -0.177 4.177 5 C 0.389 3.611 6 O -0.428 6.428 7 O -0.248 6.248 8 C 0.056 3.944 9 C -0.151 4.151 10 C 0.016 3.984 11 N -0.335 5.335 12 C -0.389 4.389 13 H 0.094 0.906 14 C -0.249 4.249 15 N -0.584 5.584 16 Si 0.796 3.204 17 H -0.186 1.186 18 H -0.219 1.219 19 H -0.222 1.222 20 C 0.056 3.944 21 C -0.179 4.179 22 N -0.240 5.240 23 C -0.043 4.043 24 C 0.340 3.660 25 O -0.482 6.482 26 H 0.107 0.893 27 H 0.147 0.853 28 H 0.100 0.900 29 H 0.263 0.737 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.034 0.966 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.014 0.986 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.108 0.892 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.284 -10.210 -6.291 22.709 hybrid contribution 1.163 0.298 0.841 1.466 sum -18.121 -9.913 -5.450 21.362 Atomic orbital electron populations 1.22316 0.71556 1.06441 1.05222 1.45370 1.09735 1.05250 1.62702 1.23053 0.86103 0.94912 0.94944 1.18354 0.92979 0.82870 1.23528 1.19553 0.87076 0.82017 0.72471 1.90874 1.28284 1.75639 1.48036 1.86546 1.38298 1.16437 1.83562 1.22702 0.83583 0.90976 0.97128 1.22048 0.99496 0.92598 1.00981 1.21080 0.92814 0.98704 0.85825 1.44463 1.76504 1.02844 1.09678 1.19601 1.15114 0.86402 1.17791 0.90648 1.25840 0.95385 1.00635 1.03012 1.70194 1.18653 1.35498 1.34083 0.85200 0.77329 0.79600 0.78264 1.18565 1.21937 1.22233 1.20528 0.91334 0.85959 0.96618 1.22414 0.99888 0.99745 0.95854 1.45281 1.07388 1.05097 1.66203 1.21918 0.84945 0.93685 1.03796 1.16298 0.81022 0.85282 0.83434 1.91003 1.77050 1.17903 1.62223 0.89313 0.85275 0.89950 0.73713 0.91496 0.90217 0.88560 0.96579 0.90746 0.94158 0.92109 0.98647 0.91065 0.92675 0.90964 0.89158 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.59 11.01 127.77 1.41 2.00 16 2 N -0.52 -8.27 3.12 -679.62 -2.12 -10.39 16 3 C 0.14 1.97 11.20 83.21 0.93 2.91 16 4 C -0.07 -1.63 6.88 39.32 0.27 -1.36 16 5 C 0.54 15.02 7.90 69.96 0.55 15.58 16 6 O -0.54 -18.32 14.10 19.40 0.27 -18.04 16 7 O -0.33 -8.84 9.69 -58.16 -0.56 -9.41 16 8 C 0.11 3.57 2.42 30.62 0.07 3.65 16 9 C -0.11 -3.31 5.74 30.67 0.18 -3.13 16 10 C 0.14 5.37 6.51 86.36 0.56 5.93 16 11 N -0.61 -29.56 3.01 -698.36 -2.10 -31.66 16 12 C -0.26 -13.69 9.59 84.04 0.81 -12.88 16 13 H 0.08 3.80 7.88 -2.91 -0.02 3.78 16 14 C -0.05 -2.93 4.92 84.86 0.42 -2.51 16 15 N -0.94 -55.14 11.18 21.65 0.24 -54.90 16 16 Si 0.97 43.77 29.59 68.60 2.03 45.80 16 17 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 18 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 19 H -0.30 -13.48 7.11 99.48 0.71 -12.77 16 20 C 0.18 8.74 5.33 86.31 0.46 9.20 16 21 C -0.14 -5.29 5.72 30.67 0.18 -5.11 16 22 N -0.52 -12.95 3.21 -667.16 -2.14 -15.09 16 23 C 0.10 2.25 10.57 127.77 1.35 3.60 16 24 C 0.64 16.07 8.49 179.11 1.52 17.59 16 25 O -0.60 -19.12 17.58 -4.43 -0.08 -19.20 16 26 H 0.09 0.45 8.14 -2.39 -0.02 0.44 16 27 H 0.13 -0.04 8.14 -2.39 -0.02 -0.06 16 28 H 0.08 0.76 8.04 -2.39 -0.02 0.74 16 29 H 0.25 1.14 8.06 -2.91 -0.02 1.12 16 30 H 0.07 2.40 7.16 -2.39 -0.02 2.38 16 31 H 0.08 2.28 8.14 -2.39 -0.02 2.27 16 32 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.07 2.65 7.93 -2.39 -0.02 2.63 16 35 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 36 H 0.06 3.32 6.04 -2.39 -0.01 3.31 16 37 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 38 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 40 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.09 1.89 8.08 -2.39 -0.02 1.87 16 42 H 0.09 2.24 6.45 -2.39 -0.02 2.22 16 Total: -1.00 -75.49 350.31 5.27 -70.22 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 1.02 Total: 7.23 kcal Atomic # 6 Polarization: 26.74 SS G_CDS: 8.71 Total: 35.44 kcal Atomic # 7 Polarization: -105.92 SS G_CDS: -6.12 Total: -112.04 kcal Atomic # 8 Polarization: -46.28 SS G_CDS: -0.37 Total: -46.65 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -75.49 5.27 -70.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892863768.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.605 kcal (2) G-P(sol) polarization free energy of solvation -75.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds