Wall clock time and date at job start Fri Apr 10 2020 18:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.62420 * 2 1 4 4 C 1.53242 * 109.62569 * 239.61570 * 2 1 3 5 5 N 1.46897 * 109.33976 * 186.46279 * 4 2 1 6 6 C 1.39207 * 111.00037 * 187.25546 * 5 4 2 7 7 C 1.36171 * 126.22474 * 124.58555 * 6 5 4 8 8 N 1.48042 * 126.08941 * 359.97338 * 7 6 5 9 9 O 1.21801 * 119.99635 * 175.05432 * 8 7 6 10 10 O 1.21795 * 119.99758 * 354.77949 * 8 7 6 11 11 C 1.39771 * 107.81458 * 180.24275 * 7 6 5 12 12 N 1.30837 * 108.32463 * 359.54966 * 11 7 6 13 13 N 1.35256 * 126.21794 * 304.55432 * 6 5 4 14 14 C 1.46494 * 126.04454 * 0.02562 * 13 6 5 15 15 C 1.46896 * 111.27272 * 63.10277 * 5 4 2 16 16 C 1.53241 * 109.33857 * 296.90103 * 15 5 4 17 17 H 1.08996 * 109.62934 * 173.54112 * 16 15 5 18 18 C 1.53001 * 109.62737 * 294.11311 * 16 15 5 19 19 N 1.47074 * 108.52476 * 53.82734 * 16 15 5 20 20 C 1.36937 * 120.88246 * 128.83874 * 19 16 15 21 21 H 1.08000 * 119.99944 * 209.51672 * 20 19 16 22 22 C 1.38809 * 119.99781 * 29.51706 * 20 19 16 23 23 N 1.31618 * 120.00143 * 11.35550 * 22 20 19 24 24 Si 1.86806 * 119.99694 * 191.34630 * 22 20 19 25 25 H 1.48506 * 109.46635 * 90.00208 * 24 22 20 26 26 H 1.48504 * 109.47141 * 209.99972 * 24 22 20 27 27 H 1.48499 * 109.47248 * 330.00296 * 24 22 20 28 28 H 1.09001 * 109.47390 * 180.38478 * 1 2 3 29 29 H 1.09002 * 109.46977 * 300.38555 * 1 2 3 30 30 H 1.08995 * 109.46996 * 60.38145 * 1 2 3 31 31 H 1.08996 * 109.49499 * 66.50077 * 4 2 1 32 32 H 1.09007 * 109.49425 * 306.41992 * 4 2 1 33 33 H 1.07998 * 125.83389 * 179.73515 * 11 7 6 34 34 H 1.08994 * 109.47151 * 93.49640 * 14 13 6 35 35 H 1.08995 * 109.47210 * 213.50088 * 14 13 6 36 36 H 1.09004 * 109.46772 * 333.50202 * 14 13 6 37 37 H 1.09000 * 109.48962 * 56.85565 * 15 5 4 38 38 H 1.08996 * 109.49643 * 176.93542 * 15 5 4 39 39 H 1.08999 * 109.47407 * 179.02786 * 18 16 15 40 40 H 1.08996 * 109.47223 * 299.03877 * 18 16 15 41 41 H 1.09004 * 109.46782 * 59.03109 * 18 16 15 42 42 H 0.97006 * 119.99602 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0448 -0.7301 -1.2451 5 7 3.5054 -0.8624 -1.1625 6 6 4.0279 -1.3737 -2.3472 7 6 4.9985 -0.8013 -3.1117 8 7 5.6878 0.4785 -2.8316 9 8 6.6052 0.8447 -3.5442 10 8 5.3342 1.1676 -1.8916 11 6 5.2236 -1.6344 -4.2112 12 7 4.4311 -2.6706 -4.1113 13 7 3.6640 -2.5297 -2.9478 14 6 2.6474 -3.4683 -2.4666 15 6 3.9016 -1.6871 -0.0132 16 6 3.4629 -0.9963 1.2824 17 1 3.6509 -1.6549 2.1303 18 6 4.2417 0.3089 1.4580 19 7 2.0241 -0.7050 1.1925 20 6 1.1673 -1.0797 2.1929 21 1 0.1375 -1.3106 1.9636 22 6 1.6224 -1.1626 3.5016 23 7 2.8015 -0.6725 3.8207 24 14 0.5612 -1.9697 4.8101 25 1 0.8709 -3.4207 4.8728 26 1 0.8412 -1.3462 6.1285 27 1 -0.8721 -1.7837 4.4690 28 1 -0.3634 -1.0276 0.0069 29 1 -0.3633 0.5198 0.8865 30 1 -0.3633 0.5079 -0.8933 31 1 1.7810 -0.1601 -2.1360 32 1 1.5923 -1.7203 -1.2993 33 1 5.9328 -1.4550 -5.0057 34 1 1.6891 -3.2351 -2.9304 35 1 2.9395 -4.4855 -2.7275 36 1 2.5574 -3.3826 -1.3837 37 1 3.4233 -2.6640 -0.0845 38 1 4.9845 -1.8113 -0.0106 39 1 3.9155 0.8066 2.3712 40 1 5.3074 0.0900 1.5242 41 1 4.0570 0.9599 0.6035 42 1 3.1197 -0.7309 4.7352 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894369160.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:39 Heat of formation + Delta-G solvation = 124.296494 kcal Electronic energy + Delta-G solvation = -27731.343775 eV Core-core repulsion = 23946.336452 eV Total energy + Delta-G solvation = -3785.007323 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.36478 -41.10663 -38.79416 -35.99874 -35.20143 -33.58026 -32.81272 -31.63117 -30.03398 -28.22150 -27.63077 -26.44427 -25.27220 -24.64600 -23.32871 -21.64611 -21.16390 -20.60671 -18.90030 -18.66279 -17.95160 -17.15122 -17.11310 -16.08560 -15.79921 -15.38012 -15.01692 -14.78837 -14.37887 -14.07366 -13.90107 -13.46156 -13.21514 -12.96315 -12.72834 -12.11751 -11.90792 -11.75513 -11.50319 -11.20167 -11.10376 -11.05083 -10.85173 -10.77356 -10.64310 -10.62442 -10.56906 -10.18593 -10.14560 -9.87554 -9.68314 -9.49466 -9.33441 -8.72931 -8.47517 -6.77215 -5.88177 -3.36600 0.56519 1.39952 1.46305 2.29879 2.37738 3.27990 3.35701 3.37765 3.42277 3.99486 4.35985 4.58574 4.68893 4.79564 5.00110 5.02127 5.08570 5.24979 5.31194 5.41091 5.58421 5.72327 5.72750 5.79390 5.97003 6.06283 6.08898 6.18582 6.38440 6.58054 6.75668 6.81446 6.90471 6.96913 7.00014 7.09388 7.15651 7.18814 7.59742 7.69989 7.90209 8.19065 8.33295 9.10624 9.69896 10.28271 11.18730 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.019628 B = 0.004931 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.202692 B = 5676.966504 C = 6217.591992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.173 3.827 3 H 0.045 0.955 4 C 0.040 3.960 5 N -0.450 5.450 6 C 0.360 3.640 7 C -0.185 4.185 8 N 0.072 4.928 9 O -0.203 6.203 10 O -0.124 6.124 11 C 0.114 3.886 12 N -0.277 5.277 13 N -0.375 5.375 14 C 0.084 3.916 15 C 0.038 3.962 16 C 0.203 3.797 17 H 0.105 0.895 18 C -0.138 4.138 19 N -0.584 5.584 20 C -0.257 4.257 21 H 0.072 0.928 22 C 0.008 3.992 23 N -0.896 5.896 24 Si 0.902 3.098 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.280 1.280 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.040 0.960 31 H 0.068 0.932 32 H 0.043 0.957 33 H 0.207 0.793 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.036 0.964 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.022 0.978 41 H 0.044 0.956 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.122 -4.456 -12.135 12.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.066 3.934 3 H 0.063 0.937 4 C -0.088 4.088 5 N -0.174 5.174 6 C 0.134 3.866 7 C -0.284 4.284 8 N 0.589 4.411 9 O -0.406 6.406 10 O -0.348 6.348 11 C -0.075 4.075 12 N -0.098 5.098 13 N -0.159 5.159 14 C -0.056 4.056 15 C -0.088 4.088 16 C 0.096 3.904 17 H 0.123 0.877 18 C -0.197 4.197 19 N -0.307 5.307 20 C -0.386 4.386 21 H 0.089 0.911 22 C -0.192 4.192 23 N -0.540 5.540 24 Si 0.732 3.268 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.205 1.205 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.223 0.777 34 H 0.105 0.895 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.054 0.946 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.041 0.959 41 H 0.063 0.937 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.391 -5.813 -12.529 13.818 hybrid contribution -0.329 -0.213 0.945 1.023 sum -0.720 -6.026 -11.584 13.078 Atomic orbital electron populations 1.21795 0.95363 1.01429 1.00884 1.20455 0.92632 0.94696 0.85629 0.93705 1.23099 0.83242 1.00541 1.01882 1.60143 1.13521 1.46376 0.97406 1.19870 0.91358 0.84288 0.91069 1.20476 1.09475 0.94364 1.04087 1.42300 0.98998 1.00390 0.99413 1.94488 1.22038 1.76036 1.48038 1.94649 1.68399 1.51480 1.20261 1.23710 0.97624 0.89363 0.96798 1.77579 1.08131 1.21567 1.02484 1.49638 1.30555 1.17055 1.18641 1.22469 0.88889 0.92786 1.01469 1.23280 0.99772 0.94165 0.91621 1.20463 0.83192 0.96005 0.90732 0.87749 1.21986 0.96570 0.98875 1.02291 1.44288 1.03374 1.64688 1.18332 1.19145 0.93903 1.39746 0.85789 0.91083 1.25138 0.97295 0.99643 0.97076 1.69951 1.19069 1.46734 1.18222 0.86310 0.79986 0.78941 0.81541 1.21630 1.21670 1.20533 0.92915 0.91228 0.94095 0.91335 0.93895 0.77664 0.89491 0.88308 0.87816 0.94551 0.91301 0.90508 0.95923 0.93673 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 7.95 37.16 0.30 -1.96 16 2 C 0.17 3.22 3.25 -67.49 -0.22 3.00 16 3 H 0.05 0.93 7.64 -51.93 -0.40 0.53 16 4 C 0.04 0.63 4.48 -3.70 -0.02 0.62 16 5 N -0.45 -7.51 3.30 -172.94 -0.57 -8.08 16 6 C 0.36 5.54 5.42 -153.40 -0.83 4.71 16 7 C -0.19 -2.91 7.13 -80.10 -0.57 -3.48 16 8 N 0.07 1.27 4.46 33.89 0.15 1.42 16 9 O -0.20 -3.53 19.05 -29.46 -0.56 -4.09 16 10 O -0.12 -2.42 18.34 -29.46 -0.54 -2.96 16 11 C 0.11 1.47 11.74 -17.40 -0.20 1.26 16 12 N -0.28 -3.66 12.56 30.60 0.38 -3.27 16 13 N -0.37 -4.95 4.02 -67.25 -0.27 -5.22 16 14 C 0.08 0.84 9.76 59.84 0.58 1.42 16 15 C 0.04 0.67 4.75 -3.70 -0.02 0.66 16 16 C 0.20 4.31 2.34 -67.49 -0.16 4.16 16 17 H 0.10 2.53 6.16 -51.93 -0.32 2.21 16 18 C -0.14 -3.03 8.94 37.16 0.33 -2.70 16 19 N -0.58 -12.69 2.73 -157.01 -0.43 -13.12 16 20 C -0.26 -6.14 8.66 -15.06 -0.13 -6.27 16 21 H 0.07 1.66 6.23 -52.49 -0.33 1.34 16 22 C 0.01 0.19 5.05 -17.43 -0.09 0.11 16 23 N -0.90 -23.48 9.57 55.49 0.53 -22.95 16 24 Si 0.90 20.07 29.57 -169.99 -5.03 15.04 16 25 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 28 H 0.05 0.85 7.52 -51.93 -0.39 0.46 16 29 H 0.07 1.26 7.61 -51.93 -0.40 0.86 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 32 H 0.04 0.62 5.50 -51.93 -0.29 0.34 16 33 H 0.21 1.93 8.06 -52.49 -0.42 1.51 16 34 H 0.09 0.74 8.05 -51.93 -0.42 0.32 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.10 1.14 4.48 -51.93 -0.23 0.90 16 37 H 0.04 0.60 5.75 -51.93 -0.30 0.30 16 38 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 39 H 0.08 1.90 6.83 -51.93 -0.35 1.55 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.04 0.99 7.08 -51.93 -0.37 0.62 16 42 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 LS Contribution 334.23 15.07 5.04 5.04 Total: -1.00 -27.81 334.23 -7.77 -35.58 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -5.45 Total: 1.08 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -1.02 Total: 1.53 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -0.20 Total: -51.22 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -1.10 Total: -7.06 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.03 Total: 15.04 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.81 -7.77 -35.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894369160.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.880 kcal (2) G-P(sol) polarization free energy of solvation -27.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds