Wall clock time and date at job start Fri Apr 10 2020 18:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.62420 * 2 1 4 4 C 1.53242 * 109.62569 * 239.61570 * 2 1 3 5 5 N 1.46897 * 109.33976 * 186.46279 * 4 2 1 6 6 C 1.39207 * 111.00037 * 187.25546 * 5 4 2 7 7 C 1.36171 * 126.22474 * 124.58555 * 6 5 4 8 8 N 1.48042 * 126.08941 * 359.97338 * 7 6 5 9 9 O 1.21801 * 119.99635 * 175.05432 * 8 7 6 10 10 O 1.21795 * 119.99758 * 354.77949 * 8 7 6 11 11 C 1.39771 * 107.81458 * 180.24275 * 7 6 5 12 12 N 1.30837 * 108.32463 * 359.54966 * 11 7 6 13 13 N 1.35256 * 126.21794 * 304.55432 * 6 5 4 14 14 C 1.46494 * 126.04454 * 0.02562 * 13 6 5 15 15 C 1.46896 * 111.27272 * 63.10277 * 5 4 2 16 16 C 1.53241 * 109.33857 * 296.90103 * 15 5 4 17 17 H 1.08996 * 109.62934 * 173.54112 * 16 15 5 18 18 C 1.53001 * 109.62737 * 294.11311 * 16 15 5 19 19 N 1.47074 * 108.52476 * 53.82734 * 16 15 5 20 20 C 1.36937 * 120.88246 * 128.83874 * 19 16 15 21 21 H 1.08000 * 119.99944 * 209.51672 * 20 19 16 22 22 C 1.38809 * 119.99781 * 29.51706 * 20 19 16 23 23 N 1.31618 * 120.00143 * 11.35550 * 22 20 19 24 24 Si 1.86806 * 119.99694 * 191.34630 * 22 20 19 25 25 H 1.48506 * 109.46635 * 90.00208 * 24 22 20 26 26 H 1.48504 * 109.47141 * 209.99972 * 24 22 20 27 27 H 1.48499 * 109.47248 * 330.00296 * 24 22 20 28 28 H 1.09001 * 109.47390 * 180.38478 * 1 2 3 29 29 H 1.09002 * 109.46977 * 300.38555 * 1 2 3 30 30 H 1.08995 * 109.46996 * 60.38145 * 1 2 3 31 31 H 1.08996 * 109.49499 * 66.50077 * 4 2 1 32 32 H 1.09007 * 109.49425 * 306.41992 * 4 2 1 33 33 H 1.07998 * 125.83389 * 179.73515 * 11 7 6 34 34 H 1.08994 * 109.47151 * 93.49640 * 14 13 6 35 35 H 1.08995 * 109.47210 * 213.50088 * 14 13 6 36 36 H 1.09004 * 109.46772 * 333.50202 * 14 13 6 37 37 H 1.09000 * 109.48962 * 56.85565 * 15 5 4 38 38 H 1.08996 * 109.49643 * 176.93542 * 15 5 4 39 39 H 1.08999 * 109.47407 * 179.02786 * 18 16 15 40 40 H 1.08996 * 109.47223 * 299.03877 * 18 16 15 41 41 H 1.09004 * 109.46782 * 59.03109 * 18 16 15 42 42 H 0.97006 * 119.99602 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0448 -0.7301 -1.2451 5 7 3.5054 -0.8624 -1.1625 6 6 4.0279 -1.3737 -2.3472 7 6 4.9985 -0.8013 -3.1117 8 7 5.6878 0.4785 -2.8316 9 8 6.6052 0.8447 -3.5442 10 8 5.3342 1.1676 -1.8916 11 6 5.2236 -1.6344 -4.2112 12 7 4.4311 -2.6706 -4.1113 13 7 3.6640 -2.5297 -2.9478 14 6 2.6474 -3.4683 -2.4666 15 6 3.9016 -1.6871 -0.0132 16 6 3.4629 -0.9963 1.2824 17 1 3.6509 -1.6549 2.1303 18 6 4.2417 0.3089 1.4580 19 7 2.0241 -0.7050 1.1925 20 6 1.1673 -1.0797 2.1929 21 1 0.1375 -1.3106 1.9636 22 6 1.6224 -1.1626 3.5016 23 7 2.8015 -0.6725 3.8207 24 14 0.5612 -1.9697 4.8101 25 1 0.8709 -3.4207 4.8728 26 1 0.8412 -1.3462 6.1285 27 1 -0.8721 -1.7837 4.4690 28 1 -0.3634 -1.0276 0.0069 29 1 -0.3633 0.5198 0.8865 30 1 -0.3633 0.5079 -0.8933 31 1 1.7810 -0.1601 -2.1360 32 1 1.5923 -1.7203 -1.2993 33 1 5.9328 -1.4550 -5.0057 34 1 1.6891 -3.2351 -2.9304 35 1 2.9395 -4.4855 -2.7275 36 1 2.5574 -3.3826 -1.3837 37 1 3.4233 -2.6640 -0.0845 38 1 4.9845 -1.8113 -0.0106 39 1 3.9155 0.8066 2.3712 40 1 5.3074 0.0900 1.5242 41 1 4.0570 0.9599 0.6035 42 1 3.1197 -0.7309 4.7352 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894369160.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:38 Heat of formation + Delta-G solvation = 108.868434 kcal Electronic energy + Delta-G solvation = -27732.012786 eV Core-core repulsion = 23946.336452 eV Total energy + Delta-G solvation = -3785.676334 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.52696 -42.38583 -40.21684 -37.35942 -36.68225 -34.62117 -34.37977 -33.31458 -31.34163 -29.70079 -28.89887 -27.85687 -26.57779 -26.16998 -24.88596 -22.78735 -22.64994 -21.82512 -20.53914 -19.88876 -19.25486 -18.51554 -18.40989 -17.56255 -17.10757 -16.81687 -16.30051 -15.99675 -15.74135 -15.51494 -15.37881 -15.02750 -14.47440 -13.93093 -13.83199 -13.60985 -13.38318 -13.11147 -12.94177 -12.83519 -12.76743 -12.47009 -12.44093 -12.39806 -12.22178 -12.02142 -11.96360 -11.93058 -11.75882 -11.43649 -11.20796 -10.84875 -10.52747 -10.46388 -9.87188 -8.56766 -7.77172 -5.26024 -0.75208 0.28392 0.33028 1.18991 1.22147 1.50326 1.53599 1.59967 2.18000 2.55211 2.97133 3.37322 3.47665 3.53649 3.64836 3.91544 4.01183 4.07324 4.13824 4.19708 4.23278 4.41020 4.54175 4.58435 4.64378 4.73345 4.74716 4.90578 4.94818 5.05556 5.18628 5.28313 5.40981 5.43513 5.46695 5.61602 5.74954 5.86584 5.89492 5.94297 6.04152 6.48288 6.79457 7.24111 7.90470 8.45604 9.28031 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.019628 B = 0.004931 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.202692 B = 5676.966504 C = 6217.591992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.168 3.832 3 H 0.018 0.982 4 C 0.050 3.950 5 N -0.463 5.463 6 C 0.352 3.648 7 C -0.199 4.199 8 N 0.075 4.925 9 O -0.184 6.184 10 O -0.186 6.186 11 C 0.126 3.874 12 N -0.273 5.273 13 N -0.365 5.365 14 C 0.075 3.925 15 C 0.054 3.946 16 C 0.205 3.795 17 H 0.073 0.927 18 C -0.120 4.120 19 N -0.595 5.595 20 C -0.249 4.249 21 H 0.080 0.920 22 C -0.044 4.044 23 N -0.925 5.925 24 Si 0.958 3.042 25 H -0.289 1.289 26 H -0.305 1.305 27 H -0.270 1.270 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.240 0.760 34 H 0.109 0.891 35 H 0.122 0.878 36 H 0.095 0.905 37 H 0.052 0.948 38 H 0.067 0.933 39 H 0.042 0.958 40 H 0.025 0.975 41 H 0.039 0.961 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.837 -6.340 -14.894 16.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.061 3.939 3 H 0.036 0.964 4 C -0.077 4.077 5 N -0.188 5.188 6 C 0.124 3.876 7 C -0.299 4.299 8 N 0.587 4.413 9 O -0.395 6.395 10 O -0.395 6.395 11 C -0.063 4.063 12 N -0.094 5.094 13 N -0.148 5.148 14 C -0.063 4.063 15 C -0.073 4.073 16 C 0.098 3.902 17 H 0.091 0.909 18 C -0.179 4.179 19 N -0.318 5.318 20 C -0.379 4.379 21 H 0.097 0.903 22 C -0.240 4.240 23 N -0.570 5.570 24 Si 0.788 3.212 25 H -0.216 1.216 26 H -0.232 1.232 27 H -0.195 1.195 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.256 0.744 34 H 0.127 0.873 35 H 0.140 0.860 36 H 0.113 0.887 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.044 0.956 41 H 0.058 0.942 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.437 -7.674 -15.230 17.115 hybrid contribution 0.006 0.341 1.637 1.672 sum -1.431 -7.333 -13.593 15.511 Atomic orbital electron populations 1.21702 0.93477 1.01967 1.01430 1.20579 0.94215 0.93444 0.85638 0.96407 1.22941 0.82883 1.01375 1.00508 1.59918 1.14103 1.46967 0.97767 1.19639 0.91840 0.85332 0.90761 1.20719 1.09929 0.93698 1.05510 1.42563 0.98852 1.00968 0.98946 1.94445 1.21628 1.76179 1.47209 1.94669 1.69877 1.53129 1.21849 1.24246 0.97552 0.88050 0.96438 1.77628 1.08087 1.21457 1.02205 1.49851 1.30401 1.16376 1.18149 1.22757 0.89149 0.93369 1.01056 1.22899 0.99664 0.94366 0.90336 1.20220 0.83242 0.94932 0.91802 0.90889 1.21775 0.96812 0.99233 1.00114 1.44465 1.03281 1.65167 1.18882 1.19456 0.94387 1.37950 0.86147 0.90260 1.25759 0.98349 1.01003 0.98896 1.70132 1.20566 1.48628 1.17721 0.85417 0.79130 0.77804 0.78869 1.21607 1.23219 1.19534 0.92200 0.93418 0.90921 0.89852 0.91827 0.74395 0.87277 0.85971 0.88715 0.92966 0.91487 0.93938 0.95616 0.94153 0.94516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.98 7.95 71.98 0.57 -3.41 16 2 C 0.17 6.14 3.25 44.96 0.15 6.28 16 3 H 0.02 0.76 7.64 -2.39 -0.02 0.74 16 4 C 0.05 1.47 4.48 86.38 0.39 1.86 16 5 N -0.46 -14.89 3.30 -701.05 -2.31 -17.20 16 6 C 0.35 10.03 5.42 131.42 0.71 10.74 16 7 C -0.20 -5.80 7.13 36.26 0.26 -5.54 16 8 N 0.08 2.59 4.46 -46.71 -0.21 2.38 16 9 O -0.18 -6.10 19.05 18.88 0.36 -5.74 16 10 O -0.19 -7.41 18.34 18.89 0.35 -7.06 16 11 C 0.13 2.78 11.74 85.21 1.00 3.79 16 12 N -0.27 -6.13 12.56 -57.09 -0.72 -6.85 16 13 N -0.36 -8.32 4.02 -366.67 -1.47 -9.79 16 14 C 0.08 1.20 9.76 127.77 1.25 2.45 16 15 C 0.05 1.88 4.75 86.38 0.41 2.29 16 16 C 0.21 8.92 2.34 44.96 0.11 9.03 16 17 H 0.07 3.67 6.16 -2.39 -0.01 3.65 16 18 C -0.12 -5.54 8.94 71.98 0.64 -4.89 16 19 N -0.59 -26.01 2.73 -650.65 -1.77 -27.78 16 20 C -0.25 -11.96 8.66 84.03 0.73 -11.23 16 21 H 0.08 3.63 6.23 -2.91 -0.02 3.61 16 22 C -0.04 -2.25 5.05 84.86 0.43 -1.82 16 23 N -0.92 -50.45 9.57 21.65 0.21 -50.25 16 24 Si 0.96 41.82 29.57 68.60 2.03 43.85 16 25 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 26 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 28 H 0.06 1.78 7.52 -2.39 -0.02 1.76 16 29 H 0.05 1.68 7.61 -2.39 -0.02 1.66 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.08 2.24 8.09 -2.39 -0.02 2.22 16 32 H 0.06 1.62 5.50 -2.38 -0.01 1.61 16 33 H 0.24 3.42 8.06 -2.91 -0.02 3.39 16 34 H 0.11 1.33 8.05 -2.39 -0.02 1.31 16 35 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.09 1.74 4.48 -2.39 -0.01 1.73 16 37 H 0.05 1.64 5.75 -2.39 -0.01 1.63 16 38 H 0.07 2.33 8.09 -2.39 -0.02 2.32 16 39 H 0.04 2.22 6.83 -2.39 -0.02 2.20 16 40 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.04 1.85 7.08 -2.39 -0.02 1.83 16 42 H 0.25 13.34 8.31 -92.70 -0.77 12.57 16 Total: -1.00 -62.10 334.23 4.15 -57.95 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 1.05 Total: 10.96 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 6.64 Total: 9.54 kcal Atomic # 7 Polarization: -103.21 SS G_CDS: -6.28 Total: -109.49 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.71 Total: -12.81 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -62.10 4.15 -57.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894369160.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.814 kcal (2) G-P(sol) polarization free energy of solvation -62.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds