Wall clock time and date at job start Fri Apr 10 2020 18:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.62628 * 2 1 4 4 C 1.53243 * 109.62925 * 120.38254 * 2 1 3 5 5 N 1.46899 * 109.33634 * 65.88396 * 4 2 1 6 6 C 1.39211 * 110.99502 * 187.25472 * 5 4 2 7 7 C 1.36167 * 126.22285 * 124.70843 * 6 5 4 8 8 N 1.48045 * 126.09018 * 359.96857 * 7 6 5 9 9 O 1.21795 * 119.99735 * 185.21511 * 8 7 6 10 10 O 1.21796 * 120.00117 * 5.22690 * 8 7 6 11 11 C 1.39773 * 107.81838 * 179.84482 * 7 6 5 12 12 N 1.30839 * 108.32148 * 0.41327 * 11 7 6 13 13 N 1.35255 * 126.21956 * 305.00803 * 6 5 4 14 14 C 1.46497 * 126.04245 * 0.02562 * 13 6 5 15 15 C 1.46895 * 111.27373 * 63.10670 * 5 4 2 16 16 C 1.53243 * 109.33656 * 296.89455 * 15 5 4 17 17 H 1.08999 * 109.78923 * 294.02164 * 16 15 5 18 18 C 1.53005 * 109.62845 * 173.54003 * 16 15 5 19 19 N 1.47072 * 109.63073 * 239.41499 * 2 1 3 20 20 C 1.36940 * 120.88475 * 111.44935 * 19 2 1 21 21 H 1.07999 * 120.00081 * 151.14934 * 20 19 2 22 22 C 1.38808 * 119.99965 * 331.15229 * 20 19 2 23 23 N 1.31619 * 119.99870 * 343.46994 * 22 20 19 24 24 Si 1.86797 * 120.00165 * 163.46656 * 22 20 19 25 25 H 1.48501 * 109.46965 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47103 * 120.00075 * 24 22 20 27 27 H 1.48508 * 109.47146 * 240.00131 * 24 22 20 28 28 H 1.08998 * 109.47285 * 299.61522 * 1 2 3 29 29 H 1.09000 * 109.47218 * 59.62246 * 1 2 3 30 30 H 1.09002 * 109.46766 * 179.61585 * 1 2 3 31 31 H 1.08991 * 109.49265 * 305.92283 * 4 2 1 32 32 H 1.09006 * 109.51321 * 185.85511 * 4 2 1 33 33 H 1.07994 * 125.84021 * 180.16698 * 11 7 6 34 34 H 1.09000 * 109.46932 * 84.50798 * 14 13 6 35 35 H 1.09003 * 109.47240 * 204.50628 * 14 13 6 36 36 H 1.09002 * 109.47333 * 324.50948 * 14 13 6 37 37 H 1.09002 * 109.49182 * 56.84801 * 15 5 4 38 38 H 1.08998 * 109.49837 * 176.93567 * 15 5 4 39 39 H 1.09001 * 109.46598 * 299.89750 * 18 16 15 40 40 H 1.08993 * 109.47051 * 59.89696 * 18 16 15 41 41 H 1.08994 * 109.47058 * 179.90224 * 18 16 15 42 42 H 0.97005 * 120.00184 * 175.07897 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0448 -0.7300 1.2451 5 7 1.6747 -2.1493 1.1646 6 6 1.9810 -2.8126 2.3496 7 6 1.1156 -3.5332 3.1152 8 7 -0.3218 -3.7514 2.8362 9 8 -1.0173 -4.3372 3.6464 10 8 -0.8088 -3.3452 1.7963 11 6 1.8269 -4.0326 4.2098 12 7 3.0665 -3.6245 4.1158 13 7 3.1909 -2.8538 2.9528 14 6 4.4149 -2.2063 2.4746 15 6 2.3148 -2.8026 0.0151 16 6 1.8111 -2.1575 -1.2804 17 1 0.7485 -2.3648 -1.4070 18 6 2.5898 -2.7201 -2.4713 19 7 2.0241 -0.7048 -1.1925 20 6 2.6650 -0.0266 -2.1947 21 1 3.4048 -0.5296 -2.7999 22 6 2.3640 1.3074 -2.4328 23 7 1.2623 1.8316 -1.9391 24 14 3.5224 2.3585 -3.4538 25 1 4.6816 1.5384 -3.8884 26 1 2.8031 2.8715 -4.6474 27 1 4.0038 3.5014 -2.6368 28 1 -0.3634 0.5078 0.8934 29 1 -0.3634 0.5197 -0.8866 30 1 -0.3633 -1.0277 -0.0069 31 1 1.5992 -0.2879 2.1362 32 1 3.1298 -0.6394 1.2978 33 1 1.4217 -4.6468 5.0004 34 1 4.4327 -1.1696 2.8106 35 1 5.2831 -2.7320 2.8720 36 1 4.4397 -2.2356 1.3852 37 1 3.3960 -2.6831 0.0845 38 1 2.0651 -3.8636 0.0141 39 1 3.6504 -2.5008 -2.3481 40 1 2.4455 -3.7992 -2.5227 41 1 2.2284 -2.2609 -3.3913 42 1 1.0868 2.7798 -2.0444 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894369161.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:41 Heat of formation + Delta-G solvation = 123.351189 kcal Electronic energy + Delta-G solvation = -27717.138864 eV Core-core repulsion = 23932.090549 eV Total energy + Delta-G solvation = -3785.048315 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.37394 -41.12261 -38.80226 -36.01837 -35.20938 -33.58312 -32.81434 -31.66859 -30.04967 -28.22135 -27.65052 -26.46903 -25.26088 -24.67077 -23.33521 -21.66921 -21.16936 -20.62827 -18.90960 -18.67548 -17.97426 -17.15331 -17.12550 -16.04542 -15.84253 -15.38116 -14.99127 -14.83697 -14.39221 -14.07200 -13.89937 -13.47889 -13.25688 -12.96316 -12.73599 -12.12965 -11.91028 -11.77880 -11.55468 -11.20483 -11.12472 -11.08994 -10.84146 -10.75411 -10.66454 -10.63959 -10.58656 -10.21267 -10.14829 -9.91127 -9.68837 -9.47065 -9.34813 -8.74028 -8.49173 -6.81676 -5.87608 -3.36435 0.55134 1.38916 1.45178 2.28514 2.36610 3.27786 3.36819 3.38686 3.41611 3.98901 4.36947 4.57934 4.67819 4.79695 4.99458 5.00757 5.08462 5.22494 5.33295 5.39933 5.57997 5.70908 5.74601 5.76537 5.96113 6.04198 6.09459 6.18505 6.37902 6.55736 6.74506 6.81882 6.84953 6.95858 6.97406 7.05388 7.12817 7.15658 7.53402 7.68624 7.87862 8.17098 8.30291 9.08717 9.69253 10.27515 11.17361 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.019822 B = 0.004883 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.200280 B = 5733.265466 C = 6171.933192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.205 3.795 3 H 0.098 0.902 4 C 0.031 3.969 5 N -0.450 5.450 6 C 0.360 3.640 7 C -0.185 4.185 8 N 0.072 4.928 9 O -0.202 6.202 10 O -0.126 6.126 11 C 0.114 3.886 12 N -0.276 5.276 13 N -0.374 5.374 14 C 0.085 3.915 15 C 0.049 3.951 16 C 0.173 3.827 17 H 0.048 0.952 18 C -0.137 4.137 19 N -0.583 5.583 20 C -0.255 4.255 21 H 0.072 0.928 22 C 0.007 3.993 23 N -0.892 5.892 24 Si 0.897 3.103 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.290 1.290 28 H 0.020 0.980 29 H 0.080 0.920 30 H 0.045 0.955 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.207 0.793 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.040 0.960 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.041 0.959 41 H 0.069 0.931 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.212 -8.417 8.459 13.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.098 3.902 3 H 0.116 0.884 4 C -0.096 4.096 5 N -0.174 5.174 6 C 0.134 3.866 7 C -0.284 4.284 8 N 0.589 4.411 9 O -0.405 6.405 10 O -0.350 6.350 11 C -0.075 4.075 12 N -0.097 5.097 13 N -0.159 5.159 14 C -0.055 4.055 15 C -0.079 4.079 16 C 0.065 3.935 17 H 0.065 0.935 18 C -0.195 4.195 19 N -0.306 5.306 20 C -0.384 4.384 21 H 0.090 0.910 22 C -0.192 4.192 23 N -0.535 5.535 24 Si 0.726 3.274 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.217 1.217 28 H 0.039 0.961 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.223 0.777 34 H 0.107 0.893 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.088 0.912 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.598 -8.146 8.959 13.790 hybrid contribution 0.289 0.720 -0.603 0.983 sum 6.886 -7.426 8.356 13.130 Atomic orbital electron populations 1.22032 0.96834 1.00440 1.00866 1.20357 0.93476 0.95290 0.81112 0.88387 1.23328 0.98594 0.84438 1.03243 1.60119 1.56247 1.03841 0.97214 1.19857 0.84026 0.91576 0.91145 1.20476 0.84432 1.19376 1.04109 1.42294 1.00976 0.97871 0.99909 1.94487 1.58864 1.43047 1.44134 1.94643 1.75268 1.51284 1.13788 1.23711 0.89473 0.97660 0.96666 1.77588 1.17871 1.11769 1.02490 1.49647 1.08923 1.38725 1.18560 1.22458 0.83412 0.98251 1.01366 1.22992 0.95940 0.97969 0.90950 1.20478 0.97541 0.85974 0.89465 0.93469 1.21796 1.00252 0.98206 0.99243 1.44305 1.66945 1.00920 1.18451 1.19196 1.14477 0.93931 1.10834 0.90997 1.25057 0.95945 0.99194 0.99011 1.70052 1.22276 1.11971 1.49207 0.86336 0.80542 0.80574 0.79904 1.20404 1.21677 1.21724 0.96057 0.90121 0.93634 0.91401 0.94174 0.77656 0.89325 0.88114 0.88216 0.94173 0.91156 0.92924 0.94014 0.91216 0.93665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.98 37.16 0.33 -2.77 16 2 C 0.20 4.30 2.34 -67.49 -0.16 4.14 16 3 H 0.10 2.33 6.29 -51.93 -0.33 2.01 16 4 C 0.03 0.54 4.61 -3.70 -0.02 0.52 16 5 N -0.45 -7.47 3.32 -172.94 -0.57 -8.04 16 6 C 0.36 5.51 5.42 -153.40 -0.83 4.68 16 7 C -0.19 -2.88 7.13 -80.10 -0.57 -3.45 16 8 N 0.07 1.27 4.46 33.89 0.15 1.42 16 9 O -0.20 -3.49 19.05 -29.46 -0.56 -4.05 16 10 O -0.13 -2.45 18.34 -29.46 -0.54 -2.99 16 11 C 0.11 1.45 11.74 -17.40 -0.20 1.25 16 12 N -0.28 -3.63 12.56 30.60 0.38 -3.24 16 13 N -0.37 -4.92 4.02 -67.24 -0.27 -5.19 16 14 C 0.09 0.85 9.62 59.85 0.58 1.43 16 15 C 0.05 0.78 4.69 -3.70 -0.02 0.76 16 16 C 0.17 3.23 3.25 -67.48 -0.22 3.01 16 17 H 0.05 0.98 7.61 -51.93 -0.40 0.59 16 18 C -0.14 -2.28 7.95 37.16 0.30 -1.99 16 19 N -0.58 -12.66 2.72 -157.00 -0.43 -13.08 16 20 C -0.26 -6.12 8.66 -15.06 -0.13 -6.25 16 21 H 0.07 1.69 6.23 -52.49 -0.33 1.37 16 22 C 0.01 0.18 4.93 -17.43 -0.09 0.10 16 23 N -0.89 -23.39 9.79 55.49 0.54 -22.84 16 24 Si 0.90 19.99 29.59 -169.99 -5.03 14.96 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 1.99 6.74 -51.93 -0.35 1.64 16 30 H 0.04 0.99 7.06 -51.93 -0.37 0.63 16 31 H 0.07 1.15 8.09 -51.93 -0.42 0.73 16 32 H 0.04 0.63 5.46 -51.93 -0.28 0.35 16 33 H 0.21 1.91 8.06 -52.49 -0.42 1.48 16 34 H 0.09 0.82 7.65 -51.93 -0.40 0.42 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.10 1.04 5.09 -51.93 -0.26 0.77 16 37 H 0.04 0.60 5.72 -51.93 -0.30 0.30 16 38 H 0.07 1.07 8.09 -51.93 -0.42 0.65 16 39 H 0.05 0.86 7.52 -51.93 -0.39 0.47 16 40 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 1.27 7.61 -51.93 -0.40 0.87 16 42 H 0.25 6.54 8.32 -40.82 -0.34 6.20 16 LS Contribution 334.46 15.07 5.04 5.04 Total: -1.00 -27.91 334.46 -7.77 -35.69 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -5.46 Total: 0.88 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -1.03 Total: 1.44 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: -0.19 Total: -50.98 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: -1.10 Total: -7.03 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.03 Total: 14.96 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.91 -7.77 -35.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894369161.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.040 kcal (2) G-P(sol) polarization free energy of solvation -27.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds