Wall clock time and date at job start Fri Apr 10 2020 18:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.62628 * 2 1 4 4 C 1.53243 * 109.62925 * 120.38254 * 2 1 3 5 5 N 1.46899 * 109.33634 * 65.88396 * 4 2 1 6 6 C 1.39211 * 110.99502 * 187.25472 * 5 4 2 7 7 C 1.36167 * 126.22285 * 124.70843 * 6 5 4 8 8 N 1.48045 * 126.09018 * 359.96857 * 7 6 5 9 9 O 1.21795 * 119.99735 * 185.21511 * 8 7 6 10 10 O 1.21796 * 120.00117 * 5.22690 * 8 7 6 11 11 C 1.39773 * 107.81838 * 179.84482 * 7 6 5 12 12 N 1.30839 * 108.32148 * 0.41327 * 11 7 6 13 13 N 1.35255 * 126.21956 * 305.00803 * 6 5 4 14 14 C 1.46497 * 126.04245 * 0.02562 * 13 6 5 15 15 C 1.46895 * 111.27373 * 63.10670 * 5 4 2 16 16 C 1.53243 * 109.33656 * 296.89455 * 15 5 4 17 17 H 1.08999 * 109.78923 * 294.02164 * 16 15 5 18 18 C 1.53005 * 109.62845 * 173.54003 * 16 15 5 19 19 N 1.47072 * 109.63073 * 239.41499 * 2 1 3 20 20 C 1.36940 * 120.88475 * 111.44935 * 19 2 1 21 21 H 1.07999 * 120.00081 * 151.14934 * 20 19 2 22 22 C 1.38808 * 119.99965 * 331.15229 * 20 19 2 23 23 N 1.31619 * 119.99870 * 343.46994 * 22 20 19 24 24 Si 1.86797 * 120.00165 * 163.46656 * 22 20 19 25 25 H 1.48501 * 109.46965 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47103 * 120.00075 * 24 22 20 27 27 H 1.48508 * 109.47146 * 240.00131 * 24 22 20 28 28 H 1.08998 * 109.47285 * 299.61522 * 1 2 3 29 29 H 1.09000 * 109.47218 * 59.62246 * 1 2 3 30 30 H 1.09002 * 109.46766 * 179.61585 * 1 2 3 31 31 H 1.08991 * 109.49265 * 305.92283 * 4 2 1 32 32 H 1.09006 * 109.51321 * 185.85511 * 4 2 1 33 33 H 1.07994 * 125.84021 * 180.16698 * 11 7 6 34 34 H 1.09000 * 109.46932 * 84.50798 * 14 13 6 35 35 H 1.09003 * 109.47240 * 204.50628 * 14 13 6 36 36 H 1.09002 * 109.47333 * 324.50948 * 14 13 6 37 37 H 1.09002 * 109.49182 * 56.84801 * 15 5 4 38 38 H 1.08998 * 109.49837 * 176.93567 * 15 5 4 39 39 H 1.09001 * 109.46598 * 299.89750 * 18 16 15 40 40 H 1.08993 * 109.47051 * 59.89696 * 18 16 15 41 41 H 1.08994 * 109.47058 * 179.90224 * 18 16 15 42 42 H 0.97005 * 120.00184 * 175.07897 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0448 -0.7300 1.2451 5 7 1.6747 -2.1493 1.1646 6 6 1.9810 -2.8126 2.3496 7 6 1.1156 -3.5332 3.1152 8 7 -0.3218 -3.7514 2.8362 9 8 -1.0173 -4.3372 3.6464 10 8 -0.8088 -3.3452 1.7963 11 6 1.8269 -4.0326 4.2098 12 7 3.0665 -3.6245 4.1158 13 7 3.1909 -2.8538 2.9528 14 6 4.4149 -2.2063 2.4746 15 6 2.3148 -2.8026 0.0151 16 6 1.8111 -2.1575 -1.2804 17 1 0.7485 -2.3648 -1.4070 18 6 2.5898 -2.7201 -2.4713 19 7 2.0241 -0.7048 -1.1925 20 6 2.6650 -0.0266 -2.1947 21 1 3.4048 -0.5296 -2.7999 22 6 2.3640 1.3074 -2.4328 23 7 1.2623 1.8316 -1.9391 24 14 3.5224 2.3585 -3.4538 25 1 4.6816 1.5384 -3.8884 26 1 2.8031 2.8715 -4.6474 27 1 4.0038 3.5014 -2.6368 28 1 -0.3634 0.5078 0.8934 29 1 -0.3634 0.5197 -0.8866 30 1 -0.3633 -1.0277 -0.0069 31 1 1.5992 -0.2879 2.1362 32 1 3.1298 -0.6394 1.2978 33 1 1.4217 -4.6468 5.0004 34 1 4.4327 -1.1696 2.8106 35 1 5.2831 -2.7320 2.8720 36 1 4.4397 -2.2356 1.3852 37 1 3.3960 -2.6831 0.0845 38 1 2.0651 -3.8636 0.0141 39 1 3.6504 -2.5008 -2.3481 40 1 2.4455 -3.7992 -2.5227 41 1 2.2284 -2.2609 -3.3913 42 1 1.0868 2.7798 -2.0444 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894369161.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:41 Heat of formation + Delta-G solvation = 107.864169 kcal Electronic energy + Delta-G solvation = -27717.810431 eV Core-core repulsion = 23932.090549 eV Total energy + Delta-G solvation = -3785.719882 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.52822 -42.38988 -40.22116 -37.36687 -36.68437 -34.63764 -34.35633 -33.35669 -31.34979 -29.70649 -28.91024 -27.87495 -26.55303 -26.18984 -24.89693 -22.79752 -22.66259 -21.83255 -20.54567 -19.89261 -19.26568 -18.49192 -18.42921 -17.54124 -17.12408 -16.81429 -16.24250 -16.09136 -15.72763 -15.53160 -15.38469 -15.03393 -14.50592 -13.93604 -13.81103 -13.63467 -13.43918 -13.11530 -12.96549 -12.83566 -12.80302 -12.47016 -12.43695 -12.38832 -12.23001 -12.02889 -11.96919 -11.93808 -11.76990 -11.47545 -11.15735 -10.85606 -10.55770 -10.44711 -9.88684 -8.61811 -7.76136 -5.25887 -0.75435 0.28155 0.32642 1.18606 1.22066 1.49097 1.54379 1.61213 2.17406 2.56084 2.97822 3.35044 3.46737 3.54179 3.64652 3.92287 3.98269 4.07367 4.13812 4.19464 4.21380 4.41179 4.53527 4.57719 4.64778 4.73134 4.73603 4.87512 4.93717 5.03289 5.15576 5.24532 5.39880 5.42608 5.45742 5.60228 5.73384 5.83456 5.88761 5.94232 6.03256 6.45933 6.78895 7.22842 7.89541 8.44903 9.26898 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.019822 B = 0.004883 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.200280 B = 5733.265466 C = 6171.933192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.206 3.794 3 H 0.069 0.931 4 C 0.046 3.954 5 N -0.464 5.464 6 C 0.353 3.647 7 C -0.198 4.198 8 N 0.076 4.924 9 O -0.183 6.183 10 O -0.188 6.188 11 C 0.126 3.874 12 N -0.273 5.273 13 N -0.365 5.365 14 C 0.076 3.924 15 C 0.060 3.940 16 C 0.168 3.832 17 H 0.019 0.981 18 C -0.128 4.128 19 N -0.594 5.594 20 C -0.248 4.248 21 H 0.079 0.921 22 C -0.043 4.043 23 N -0.921 5.921 24 Si 0.953 3.047 25 H -0.266 1.266 26 H -0.303 1.303 27 H -0.295 1.295 28 H 0.027 0.973 29 H 0.045 0.955 30 H 0.038 0.962 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.240 0.760 34 H 0.099 0.901 35 H 0.128 0.872 36 H 0.098 0.902 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.047 0.953 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.581 -10.145 10.081 16.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.099 3.901 3 H 0.087 0.913 4 C -0.081 4.081 5 N -0.188 5.188 6 C 0.124 3.876 7 C -0.298 4.298 8 N 0.587 4.413 9 O -0.394 6.394 10 O -0.397 6.397 11 C -0.063 4.063 12 N -0.094 5.094 13 N -0.148 5.148 14 C -0.063 4.063 15 C -0.067 4.067 16 C 0.061 3.939 17 H 0.037 0.963 18 C -0.186 4.186 19 N -0.317 5.317 20 C -0.378 4.378 21 H 0.097 0.903 22 C -0.239 4.239 23 N -0.567 5.567 24 Si 0.783 3.217 25 H -0.191 1.191 26 H -0.231 1.231 27 H -0.223 1.223 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.256 0.744 34 H 0.117 0.883 35 H 0.146 0.854 36 H 0.116 0.884 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.066 0.934 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 8.987 -9.854 10.483 16.964 hybrid contribution -0.435 1.146 -0.990 1.576 sum 8.552 -8.708 9.493 15.462 Atomic orbital electron populations 1.21831 0.97959 0.99326 0.99414 1.20158 0.92482 0.94556 0.82909 0.91314 1.22991 0.99473 0.84751 1.00873 1.59902 1.57229 1.03450 0.98175 1.19631 0.85030 0.92051 0.90846 1.20712 0.83113 1.20539 1.05439 1.42552 1.01892 0.97340 0.99483 1.94446 1.59638 1.41807 1.43509 1.94664 1.76263 1.53815 1.14916 1.24249 0.88720 0.97045 0.96266 1.77637 1.17899 1.11647 1.02186 1.49851 1.08864 1.37970 1.18108 1.22745 0.83006 0.99095 1.01412 1.22798 0.96751 0.97972 0.89202 1.20580 0.96593 0.84510 0.92170 0.96276 1.21704 0.99973 0.99839 0.97105 1.44494 1.66752 1.02150 1.18300 1.19496 1.13856 0.93917 1.10515 0.90334 1.25670 0.97157 1.00500 1.00604 1.70213 1.23815 1.11452 1.51215 0.85441 0.79199 0.79103 0.77981 1.19062 1.23119 1.22260 0.95387 0.93611 0.94304 0.91168 0.92262 0.74378 0.88277 0.85411 0.88403 0.92294 0.90055 0.92258 0.90998 0.93354 0.94580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.73 8.98 71.98 0.65 -5.08 16 2 C 0.21 8.80 2.34 44.96 0.11 8.91 16 3 H 0.07 3.37 6.29 -2.38 -0.02 3.35 16 4 C 0.05 1.55 4.61 86.38 0.40 1.95 16 5 N -0.46 -14.79 3.32 -701.05 -2.33 -17.12 16 6 C 0.35 9.96 5.42 131.42 0.71 10.67 16 7 C -0.20 -5.72 7.13 36.26 0.26 -5.46 16 8 N 0.08 2.58 4.46 -46.71 -0.21 2.37 16 9 O -0.18 -6.00 19.05 18.89 0.36 -5.64 16 10 O -0.19 -7.38 18.34 18.89 0.35 -7.04 16 11 C 0.13 2.75 11.74 85.21 1.00 3.76 16 12 N -0.27 -6.09 12.56 -57.09 -0.72 -6.81 16 13 N -0.36 -8.30 4.02 -366.65 -1.47 -9.78 16 14 C 0.08 1.23 9.62 127.77 1.23 2.46 16 15 C 0.06 1.80 4.69 86.39 0.41 2.20 16 16 C 0.17 6.22 3.25 44.96 0.15 6.37 16 17 H 0.02 0.83 7.61 -2.39 -0.02 0.81 16 18 C -0.13 -4.09 7.95 71.98 0.57 -3.52 16 19 N -0.59 -25.90 2.72 -650.63 -1.77 -27.67 16 20 C -0.25 -11.88 8.66 84.03 0.73 -11.16 16 21 H 0.08 3.62 6.23 -2.91 -0.02 3.60 16 22 C -0.04 -2.19 4.93 84.86 0.42 -1.77 16 23 N -0.92 -50.14 9.79 21.65 0.21 -49.93 16 24 Si 0.95 41.63 29.59 68.60 2.03 43.66 16 25 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 26 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 27 H -0.30 -13.03 7.11 99.48 0.71 -12.32 16 28 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.04 2.38 6.74 -2.39 -0.02 2.36 16 30 H 0.04 1.77 7.06 -2.39 -0.02 1.75 16 31 H 0.07 2.31 8.09 -2.39 -0.02 2.29 16 32 H 0.06 1.74 5.46 -2.38 -0.01 1.73 16 33 H 0.24 3.36 8.06 -2.91 -0.02 3.33 16 34 H 0.10 1.46 7.65 -2.39 -0.02 1.44 16 35 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.10 1.66 5.09 -2.39 -0.01 1.65 16 37 H 0.06 1.57 5.72 -2.39 -0.01 1.56 16 38 H 0.08 2.30 8.09 -2.39 -0.02 2.28 16 39 H 0.06 1.81 7.52 -2.39 -0.02 1.79 16 40 H 0.07 1.84 8.14 -2.39 -0.02 1.83 16 41 H 0.05 1.73 7.61 -2.39 -0.02 1.71 16 42 H 0.24 13.20 8.32 -92.70 -0.77 12.43 16 Total: -1.00 -61.97 334.46 4.12 -57.85 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 1.05 Total: 10.79 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 6.62 Total: 9.31 kcal Atomic # 7 Polarization: -102.64 SS G_CDS: -6.29 Total: -108.93 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.71 Total: -12.68 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -61.97 4.12 -57.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894369161.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.709 kcal (2) G-P(sol) polarization free energy of solvation -61.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds