Wall clock time and date at job start Fri Apr 10 2020 18:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36592 * 126.57856 * 2 1 4 4 C 1.47518 * 125.77207 * 0.04073 * 3 2 1 5 5 O 1.21591 * 120.00159 * 359.71157 * 4 3 2 6 6 N 1.34779 * 119.99755 * 179.71573 * 4 3 2 7 7 C 1.46506 * 119.99895 * 180.02562 * 6 4 3 8 8 C 1.52995 * 109.46858 * 180.02562 * 7 6 4 9 9 H 1.08996 * 110.64067 * 303.30523 * 8 7 6 10 10 C 1.54320 * 110.72234 * 66.45360 * 8 7 6 11 11 N 1.47029 * 107.27322 * 140.73520 * 10 8 7 12 12 C 1.36933 * 125.64936 * 181.02206 * 11 10 8 13 13 H 1.08003 * 119.99721 * 13.63215 * 12 11 10 14 14 C 1.38816 * 119.99961 * 193.62770 * 12 11 10 15 15 N 1.31616 * 119.99775 * 27.26821 * 14 12 11 16 16 Si 1.86796 * 119.99890 * 207.26642 * 14 12 11 17 17 H 1.48502 * 109.47389 * 60.00434 * 16 14 12 18 18 H 1.48499 * 109.47223 * 300.00034 * 16 14 12 19 19 H 1.48500 * 109.47095 * 180.02562 * 16 14 12 20 20 C 1.47425 * 108.70123 * 1.28326 * 11 10 8 21 21 C 1.55140 * 104.72236 * 335.55406 * 20 11 10 22 22 H 1.08998 * 111.19212 * 279.19468 * 21 20 11 23 23 O 1.42894 * 110.93636 * 155.28796 * 21 20 11 24 24 N 1.34400 * 108.45653 * 179.77548 * 3 2 1 25 25 N 1.28771 * 109.52453 * 0.22465 * 24 3 2 26 26 N 1.34811 * 126.57777 * 180.16890 * 2 1 3 27 27 C 1.46508 * 126.59525 * 359.97438 * 26 2 1 28 28 H 1.09009 * 109.46740 * 90.00253 * 1 2 3 29 29 H 1.08998 * 109.47290 * 209.99644 * 1 2 3 30 30 H 1.09000 * 109.47274 * 330.00125 * 1 2 3 31 31 H 0.96998 * 120.00190 * 359.97438 * 6 4 3 32 32 H 1.08995 * 109.47451 * 59.99349 * 7 6 4 33 33 H 1.09004 * 109.46573 * 299.99734 * 7 6 4 34 34 H 1.08996 * 109.88396 * 21.31395 * 10 8 7 35 35 H 1.09003 * 110.01118 * 260.21543 * 10 8 7 36 36 H 0.97006 * 120.00147 * 5.85176 * 15 14 12 37 37 H 1.08995 * 110.36729 * 94.48746 * 20 11 10 38 38 H 1.08999 * 110.36759 * 216.81246 * 20 11 10 39 39 H 0.96701 * 114.00090 * 67.96154 * 23 21 20 40 40 H 1.09004 * 109.46878 * 270.24543 * 27 26 2 41 41 H 1.08991 * 109.47148 * 30.24606 * 27 26 2 42 42 H 1.09003 * 109.46689 * 150.24708 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8738 2.5026 0.0009 5 8 0.6860 2.7627 -0.0037 6 7 2.7818 3.4986 0.0065 7 6 2.3376 4.8948 0.0080 8 6 3.5576 5.8180 0.0140 9 1 4.1991 5.6014 0.8682 10 6 4.3455 5.6905 -1.3067 11 7 4.7948 7.0400 -1.6791 12 6 5.5110 7.3615 -2.8010 13 1 5.6047 6.6465 -3.6051 14 6 6.1165 8.6063 -2.9049 15 7 6.4793 9.2543 -1.8183 16 14 6.4166 9.3614 -4.5869 17 1 5.1203 9.5333 -5.2908 18 1 7.2965 8.4671 -5.3813 19 1 7.0720 10.6842 -4.4258 20 6 4.3519 7.9888 -0.6413 21 6 3.1234 7.3076 0.0173 22 1 2.2241 7.4538 -0.5810 23 8 2.9307 7.7821 1.3513 24 7 3.5984 0.6789 0.0050 25 7 3.6299 -0.6085 0.0033 26 7 2.3104 -1.0826 -0.0032 27 6 1.8863 -2.4849 -0.0068 28 1 -0.3633 0.0000 -1.0278 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 3.7293 3.2912 0.0105 32 1 1.7343 5.0833 0.8959 33 1 1.7413 5.0871 -0.8840 34 1 3.6995 5.2866 -2.0862 35 1 5.2077 5.0387 -1.1653 36 1 6.4019 8.8277 -0.9505 37 1 5.1421 8.1434 0.0934 38 1 4.0620 8.9373 -1.0933 39 1 2.6586 8.7085 1.4038 40 1 1.7773 -2.8342 1.0200 41 1 0.9313 -2.5743 -0.5243 42 1 2.6350 -3.0896 -0.5187 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957951703.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:56 Heat of formation + Delta-G solvation = 34.364581 kcal Electronic energy + Delta-G solvation = -25392.000601 eV Core-core repulsion = 21603.093538 eV Total energy + Delta-G solvation = -3788.907063 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.48651 -39.51014 -38.31493 -35.40830 -35.22280 -34.72128 -32.60545 -32.32936 -29.87529 -28.40200 -27.80413 -27.63799 -25.40230 -23.99048 -22.93777 -21.32093 -20.78103 -20.17663 -19.87743 -18.14299 -17.55856 -16.99794 -16.71107 -16.12421 -15.80979 -15.26343 -14.68657 -14.50026 -14.35576 -14.10874 -13.74832 -13.69220 -13.51078 -13.50296 -13.38550 -12.94615 -12.90524 -12.41944 -12.17746 -12.16463 -11.93492 -11.40416 -11.11696 -10.88148 -10.70331 -10.51571 -10.49834 -10.24313 -10.01421 -9.91236 -9.70928 -9.41369 -9.31459 -8.93178 -8.43403 -6.98435 -6.10342 -3.14090 0.86181 1.55707 1.73514 3.14108 3.23377 3.50883 3.54369 3.72447 3.93977 4.01684 4.29714 4.42318 4.51106 4.54335 4.63308 4.77903 4.93212 5.00633 5.10688 5.13545 5.29123 5.33610 5.39597 5.46282 5.59825 5.67243 5.74855 5.83884 5.93682 6.09381 6.11314 6.24470 6.44873 6.56540 6.71493 6.86342 6.95464 7.45318 7.73838 7.77668 7.99826 8.17271 8.46577 9.00074 9.80136 10.32315 11.22865 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.019801 B = 0.002925 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.743394 B = 9571.364237 C =10387.742076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.122 3.878 3 C -0.104 4.104 4 C 0.605 3.395 5 O -0.542 6.542 6 N -0.708 5.708 7 C 0.135 3.865 8 C -0.105 4.105 9 H 0.089 0.911 10 C 0.141 3.859 11 N -0.601 5.601 12 C -0.337 4.337 13 H 0.069 0.931 14 C -0.026 4.026 15 N -0.920 5.920 16 Si 1.065 2.935 17 H -0.294 1.294 18 H -0.293 1.293 19 H -0.285 1.285 20 C 0.120 3.880 21 C 0.091 3.909 22 H 0.066 0.934 23 O -0.565 6.565 24 N -0.199 5.199 25 N -0.068 5.068 26 N -0.367 5.367 27 C 0.088 3.912 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.113 0.887 31 H 0.410 0.590 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.032 0.968 35 H 0.028 0.972 36 H 0.269 0.731 37 H 0.036 0.964 38 H 0.055 0.945 39 H 0.377 0.623 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.869 -20.341 5.830 25.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.016 4.016 3 C -0.244 4.244 4 C 0.389 3.611 5 O -0.419 6.419 6 N -0.358 5.358 7 C 0.012 3.988 8 C -0.124 4.124 9 H 0.107 0.893 10 C 0.015 3.985 11 N -0.329 5.329 12 C -0.464 4.464 13 H 0.086 0.914 14 C -0.228 4.228 15 N -0.562 5.562 16 Si 0.895 3.105 17 H -0.221 1.221 18 H -0.220 1.220 19 H -0.211 1.211 20 C -0.006 4.006 21 C 0.031 3.969 22 H 0.084 0.916 23 O -0.370 6.370 24 N -0.073 5.073 25 N -0.047 5.047 26 N -0.153 5.153 27 C -0.054 4.054 28 H 0.110 0.890 29 H 0.093 0.907 30 H 0.131 0.869 31 H 0.246 0.754 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.050 0.950 35 H 0.046 0.954 36 H 0.081 0.919 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.224 0.776 40 H 0.107 0.893 41 H 0.115 0.885 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.439 -19.814 5.089 23.942 hybrid contribution -1.012 -1.023 0.587 1.554 sum -13.451 -20.837 5.677 25.443 Atomic orbital electron populations 1.20724 0.84589 1.05404 1.04701 1.21923 0.96248 0.86318 0.97080 1.21241 0.89026 0.95511 1.18576 1.16669 0.85550 0.82437 0.76449 1.90750 1.15877 1.83651 1.51629 1.45809 1.10427 1.06041 1.73514 1.21434 0.96397 0.78436 1.02543 1.22403 0.96359 0.93530 1.00139 0.89276 1.21396 0.95639 0.89461 0.92001 1.44399 1.63747 1.00602 1.24177 1.19781 1.30243 1.03322 0.93092 0.91358 1.25750 0.96511 0.95575 1.04916 1.70793 1.43540 1.42340 0.99478 0.83521 0.76027 0.76389 0.74609 1.22103 1.21989 1.21060 1.22212 0.92866 0.94029 0.91541 1.23093 0.97954 0.93174 0.82679 0.91566 1.86415 1.91623 1.31710 1.27254 1.74633 1.19053 1.04130 1.09464 1.82020 0.95871 1.03448 1.23382 1.50294 1.06528 1.07758 1.50734 1.22160 1.02467 0.76087 1.04656 0.88974 0.90714 0.86856 0.75438 0.90815 0.90961 0.95030 0.95371 0.91888 0.94669 0.92619 0.77569 0.89298 0.88532 0.87987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.67 9.38 36.01 0.34 -0.33 16 2 C 0.12 1.27 7.02 -81.88 -0.57 0.69 16 3 C -0.10 -1.41 6.99 -83.55 -0.58 -1.99 16 4 C 0.60 8.98 7.82 -12.48 -0.10 8.89 16 5 O -0.54 -8.70 14.72 5.29 0.08 -8.63 16 6 N -0.71 -10.44 5.40 -61.35 -0.33 -10.77 16 7 C 0.14 2.08 5.01 -4.04 -0.02 2.06 16 8 C -0.11 -1.84 2.74 -88.79 -0.24 -2.09 16 9 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 10 C 0.14 2.95 6.52 -3.06 -0.02 2.93 16 11 N -0.60 -15.37 3.33 -169.93 -0.57 -15.93 16 12 C -0.34 -9.62 10.05 -15.06 -0.15 -9.77 16 13 H 0.07 1.94 7.96 -52.48 -0.42 1.52 16 14 C -0.03 -0.76 5.09 -17.43 -0.09 -0.85 16 15 N -0.92 -27.96 12.82 55.49 0.71 -27.25 16 16 Si 1.07 25.53 30.00 -169.99 -5.10 20.43 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 C 0.12 2.78 4.96 -2.40 -0.01 2.77 16 21 C 0.09 1.67 3.90 -24.45 -0.10 1.57 16 22 H 0.07 1.15 8.05 -51.93 -0.42 0.73 16 23 O -0.57 -9.29 13.47 -35.23 -0.47 -9.76 16 24 N -0.20 -2.90 12.04 32.84 0.40 -2.50 16 25 N -0.07 -0.88 13.79 60.35 0.83 -0.05 16 26 N -0.37 -3.44 4.03 -63.58 -0.26 -3.70 16 27 C 0.09 0.32 11.18 59.85 0.67 0.99 16 28 H 0.09 0.56 8.14 -51.92 -0.42 0.14 16 29 H 0.07 0.29 7.84 -51.93 -0.41 -0.12 16 30 H 0.11 1.00 6.43 -51.93 -0.33 0.67 16 31 H 0.41 5.90 8.01 -40.82 -0.33 5.58 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 1.15 8.06 -51.93 -0.42 0.73 16 34 H 0.03 0.66 7.77 -51.93 -0.40 0.26 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.27 8.20 5.83 -40.82 -0.24 7.97 16 37 H 0.04 0.89 6.84 -51.93 -0.36 0.54 16 38 H 0.06 1.39 7.73 -51.93 -0.40 0.99 16 39 H 0.38 4.66 9.12 45.56 0.42 5.07 16 40 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 41 H 0.10 0.12 7.78 -51.93 -0.40 -0.29 16 42 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 351.82 15.07 5.30 5.30 Total: -1.00 -36.42 351.82 -5.33 -41.75 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -5.04 Total: 6.24 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -0.88 Total: 4.87 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: 0.79 Total: -60.20 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.40 Total: -18.39 kcal Atomic # 14 Polarization: 25.53 SS G_CDS: -5.10 Total: 20.43 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.42 -5.33 -41.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957951703.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.110 kcal (2) G-P(sol) polarization free energy of solvation -36.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds