Wall clock time and date at job start Fri Apr 10 2020 18:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36592 * 126.57856 * 2 1 4 4 C 1.47518 * 125.77207 * 0.04073 * 3 2 1 5 5 O 1.21591 * 120.00159 * 359.71157 * 4 3 2 6 6 N 1.34779 * 119.99755 * 179.71573 * 4 3 2 7 7 C 1.46506 * 119.99895 * 180.02562 * 6 4 3 8 8 C 1.52995 * 109.46858 * 180.02562 * 7 6 4 9 9 H 1.08996 * 110.64067 * 303.30523 * 8 7 6 10 10 C 1.54320 * 110.72234 * 66.45360 * 8 7 6 11 11 N 1.47029 * 107.27322 * 140.73520 * 10 8 7 12 12 C 1.36933 * 125.64936 * 181.02206 * 11 10 8 13 13 H 1.08003 * 119.99721 * 13.63215 * 12 11 10 14 14 C 1.38816 * 119.99961 * 193.62770 * 12 11 10 15 15 N 1.31616 * 119.99775 * 27.26821 * 14 12 11 16 16 Si 1.86796 * 119.99890 * 207.26642 * 14 12 11 17 17 H 1.48502 * 109.47389 * 60.00434 * 16 14 12 18 18 H 1.48499 * 109.47223 * 300.00034 * 16 14 12 19 19 H 1.48500 * 109.47095 * 180.02562 * 16 14 12 20 20 C 1.47425 * 108.70123 * 1.28326 * 11 10 8 21 21 C 1.55140 * 104.72236 * 335.55406 * 20 11 10 22 22 H 1.08998 * 111.19212 * 279.19468 * 21 20 11 23 23 O 1.42894 * 110.93636 * 155.28796 * 21 20 11 24 24 N 1.34400 * 108.45653 * 179.77548 * 3 2 1 25 25 N 1.28771 * 109.52453 * 0.22465 * 24 3 2 26 26 N 1.34811 * 126.57777 * 180.16890 * 2 1 3 27 27 C 1.46508 * 126.59525 * 359.97438 * 26 2 1 28 28 H 1.09009 * 109.46740 * 90.00253 * 1 2 3 29 29 H 1.08998 * 109.47290 * 209.99644 * 1 2 3 30 30 H 1.09000 * 109.47274 * 330.00125 * 1 2 3 31 31 H 0.96998 * 120.00190 * 359.97438 * 6 4 3 32 32 H 1.08995 * 109.47451 * 59.99349 * 7 6 4 33 33 H 1.09004 * 109.46573 * 299.99734 * 7 6 4 34 34 H 1.08996 * 109.88396 * 21.31395 * 10 8 7 35 35 H 1.09003 * 110.01118 * 260.21543 * 10 8 7 36 36 H 0.97006 * 120.00147 * 5.85176 * 15 14 12 37 37 H 1.08995 * 110.36729 * 94.48746 * 20 11 10 38 38 H 1.08999 * 110.36759 * 216.81246 * 20 11 10 39 39 H 0.96701 * 114.00090 * 67.96154 * 23 21 20 40 40 H 1.09004 * 109.46878 * 270.24543 * 27 26 2 41 41 H 1.08991 * 109.47148 * 30.24606 * 27 26 2 42 42 H 1.09003 * 109.46689 * 150.24708 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8738 2.5026 0.0009 5 8 0.6860 2.7627 -0.0037 6 7 2.7818 3.4986 0.0065 7 6 2.3376 4.8948 0.0080 8 6 3.5576 5.8180 0.0140 9 1 4.1991 5.6014 0.8682 10 6 4.3455 5.6905 -1.3067 11 7 4.7948 7.0400 -1.6791 12 6 5.5110 7.3615 -2.8010 13 1 5.6047 6.6465 -3.6051 14 6 6.1165 8.6063 -2.9049 15 7 6.4793 9.2543 -1.8183 16 14 6.4166 9.3614 -4.5869 17 1 5.1203 9.5333 -5.2908 18 1 7.2965 8.4671 -5.3813 19 1 7.0720 10.6842 -4.4258 20 6 4.3519 7.9888 -0.6413 21 6 3.1234 7.3076 0.0173 22 1 2.2241 7.4538 -0.5810 23 8 2.9307 7.7821 1.3513 24 7 3.5984 0.6789 0.0050 25 7 3.6299 -0.6085 0.0033 26 7 2.3104 -1.0826 -0.0032 27 6 1.8863 -2.4849 -0.0068 28 1 -0.3633 0.0000 -1.0278 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 3.7293 3.2912 0.0105 32 1 1.7343 5.0833 0.8959 33 1 1.7413 5.0871 -0.8840 34 1 3.6995 5.2866 -2.0862 35 1 5.2077 5.0387 -1.1653 36 1 6.4019 8.8277 -0.9505 37 1 5.1421 8.1434 0.0934 38 1 4.0620 8.9373 -1.0933 39 1 2.6586 8.7085 1.4038 40 1 1.7773 -2.8342 1.0200 41 1 0.9313 -2.5743 -0.5243 42 1 2.6350 -3.0896 -0.5187 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957951703.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:55 Heat of formation + Delta-G solvation = 3.712321 kcal Electronic energy + Delta-G solvation = -25393.329783 eV Core-core repulsion = 21603.093538 eV Total energy + Delta-G solvation = -3790.236245 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.33910 -40.77378 -39.81898 -36.84035 -36.37558 -35.84709 -34.14993 -33.34268 -31.47157 -29.69143 -29.00067 -28.34192 -27.06014 -25.54339 -24.12614 -22.46101 -22.00377 -21.59746 -21.23791 -19.68592 -19.08489 -18.40409 -17.49898 -17.12126 -16.90802 -16.54083 -16.34294 -15.81228 -15.60123 -15.35914 -15.27000 -15.05549 -14.57269 -14.23420 -14.12330 -14.04539 -13.96461 -13.86762 -13.60135 -13.31974 -12.99858 -12.77613 -12.63369 -12.41715 -12.33687 -12.20666 -11.89883 -11.74510 -11.60694 -11.21699 -11.15894 -10.95144 -10.56665 -10.38984 -10.04367 -9.09325 -8.36440 -5.36852 0.07691 0.54058 1.11044 1.57270 1.65070 1.84393 2.02952 2.16373 2.60619 3.00522 3.13385 3.20256 3.39912 3.46158 3.58492 3.60744 3.73429 3.75008 3.95260 4.25751 4.26845 4.32589 4.38847 4.44134 4.59157 4.64124 4.65009 4.67852 4.78354 4.81319 4.82433 4.95309 5.05158 5.09383 5.16457 5.30346 5.50657 5.60271 6.26273 6.32528 6.78413 6.83308 6.84943 7.05188 7.65413 8.20815 8.96278 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.019801 B = 0.002925 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.743394 B = 9571.364237 C =10387.742076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.135 3.865 3 C -0.135 4.135 4 C 0.606 3.394 5 O -0.557 6.557 6 N -0.710 5.710 7 C 0.149 3.851 8 C -0.089 4.089 9 H 0.088 0.912 10 C 0.140 3.860 11 N -0.624 5.624 12 C -0.349 4.349 13 H 0.064 0.936 14 C -0.078 4.078 15 N -0.947 5.947 16 Si 1.118 2.882 17 H -0.278 1.278 18 H -0.276 1.276 19 H -0.290 1.290 20 C 0.124 3.876 21 C 0.112 3.888 22 H 0.084 0.916 23 O -0.565 6.565 24 N -0.229 5.229 25 N -0.095 5.095 26 N -0.353 5.353 27 C 0.072 3.928 28 H 0.105 0.895 29 H 0.114 0.886 30 H 0.095 0.905 31 H 0.411 0.589 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.036 0.964 35 H 0.021 0.979 36 H 0.256 0.744 37 H 0.009 0.991 38 H 0.030 0.970 39 H 0.397 0.603 40 H 0.110 0.890 41 H 0.129 0.871 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.068 -22.365 5.615 28.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.005 4.005 3 C -0.276 4.276 4 C 0.391 3.609 5 O -0.435 6.435 6 N -0.360 5.360 7 C 0.026 3.974 8 C -0.109 4.109 9 H 0.106 0.894 10 C 0.015 3.985 11 N -0.352 5.352 12 C -0.477 4.477 13 H 0.082 0.918 14 C -0.274 4.274 15 N -0.590 5.590 16 Si 0.942 3.058 17 H -0.204 1.204 18 H -0.201 1.201 19 H -0.216 1.216 20 C -0.002 4.002 21 C 0.051 3.949 22 H 0.102 0.898 23 O -0.372 6.372 24 N -0.102 5.102 25 N -0.075 5.075 26 N -0.139 5.139 27 C -0.067 4.067 28 H 0.124 0.876 29 H 0.132 0.868 30 H 0.114 0.886 31 H 0.246 0.754 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.039 0.961 36 H 0.067 0.933 37 H 0.027 0.973 38 H 0.049 0.951 39 H 0.247 0.753 40 H 0.128 0.872 41 H 0.147 0.853 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.650 -21.892 4.893 26.793 hybrid contribution -0.368 -0.534 0.702 0.956 sum -15.018 -22.426 5.596 27.564 Atomic orbital electron populations 1.20852 0.81938 1.06467 1.05794 1.22388 0.97549 0.85617 0.94967 1.21275 0.89616 0.95635 1.21046 1.16839 0.85256 0.82987 0.75811 1.90732 1.16284 1.84064 1.52432 1.45794 1.10573 1.05864 1.73789 1.21225 0.94963 0.78379 1.02881 1.22228 0.96803 0.93821 0.98009 0.89385 1.21489 0.95756 0.87295 0.93921 1.44675 1.63492 1.02944 1.24104 1.20064 1.30113 1.03515 0.94057 0.91837 1.27193 0.96382 0.96305 1.07498 1.70907 1.45848 1.42732 0.99519 0.82826 0.76774 0.75441 0.70804 1.20431 1.20132 1.21629 1.22137 0.94254 0.93308 0.90531 1.22792 0.96100 0.92658 0.83360 0.89799 1.86389 1.91503 1.33555 1.25730 1.74592 1.20007 1.05015 1.10541 1.81902 0.98100 1.03012 1.24443 1.50646 1.05167 1.09474 1.48611 1.22740 1.04197 0.73043 1.06718 0.87624 0.86763 0.88627 0.75392 0.89940 0.91047 0.94575 0.96052 0.93344 0.97337 0.95118 0.75299 0.87158 0.85274 0.87181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.01 9.38 71.24 0.67 -0.34 16 2 C 0.13 2.53 7.02 41.72 0.29 2.83 16 3 C -0.14 -3.60 6.99 40.81 0.29 -3.32 16 4 C 0.61 17.69 7.82 86.69 0.68 18.36 16 5 O -0.56 -17.34 14.72 -4.00 -0.06 -17.40 16 6 N -0.71 -20.71 5.40 -466.28 -2.52 -23.22 16 7 C 0.15 4.42 5.01 86.38 0.43 4.85 16 8 C -0.09 -3.09 2.74 -9.61 -0.03 -3.11 16 9 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 10 C 0.14 5.94 6.52 86.73 0.57 6.50 16 11 N -0.62 -32.60 3.33 -691.52 -2.30 -34.90 16 12 C -0.35 -20.31 10.05 84.03 0.84 -19.47 16 13 H 0.06 3.66 7.96 -2.91 -0.02 3.64 16 14 C -0.08 -4.58 5.09 84.86 0.43 -4.14 16 15 N -0.95 -59.16 12.82 21.65 0.28 -58.88 16 16 Si 1.12 51.85 30.00 68.60 2.06 53.91 16 17 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 18 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 19 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 20 C 0.12 5.90 4.96 86.94 0.43 6.33 16 21 C 0.11 3.99 3.90 32.07 0.12 4.11 16 22 H 0.08 2.76 8.05 -2.39 -0.02 2.74 16 23 O -0.56 -17.68 13.47 -148.98 -2.01 -19.69 16 24 N -0.23 -6.69 12.04 -50.00 -0.60 -7.29 16 25 N -0.09 -2.42 13.79 37.02 0.51 -1.91 16 26 N -0.35 -5.86 4.03 -355.08 -1.43 -7.29 16 27 C 0.07 0.27 11.18 127.77 1.43 1.70 16 28 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.11 0.33 7.84 -2.39 -0.02 0.32 16 30 H 0.10 1.49 6.43 -2.39 -0.02 1.48 16 31 H 0.41 11.95 8.01 -92.71 -0.74 11.21 16 32 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.07 2.16 8.06 -2.39 -0.02 2.14 16 34 H 0.04 1.51 7.77 -2.39 -0.02 1.49 16 35 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.26 16.26 5.83 -92.70 -0.54 15.71 16 37 H 0.01 0.47 6.84 -2.39 -0.02 0.45 16 38 H 0.03 1.58 7.73 -2.39 -0.02 1.56 16 39 H 0.40 9.12 9.12 -74.06 -0.68 8.44 16 40 H 0.11 0.03 8.14 -2.38 -0.02 0.01 16 41 H 0.13 -0.30 7.78 -2.39 -0.02 -0.32 16 42 H 0.11 0.30 8.14 -2.39 -0.02 0.29 16 Total: -1.00 -81.46 351.82 -0.04 -81.50 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -0.12 Total: 20.87 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 6.16 Total: 14.30 kcal Atomic # 7 Polarization: -127.43 SS G_CDS: -6.06 Total: -133.50 kcal Atomic # 8 Polarization: -35.02 SS G_CDS: -2.07 Total: -37.09 kcal Atomic # 14 Polarization: 51.85 SS G_CDS: 2.06 Total: 53.91 kcal Total: -81.46 -0.04 -81.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957951703.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.209 kcal (2) G-P(sol) polarization free energy of solvation -81.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds