Wall clock time and date at job start Fri Apr 10 2020 18:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36599 * 126.57841 * 2 1 4 4 C 1.47521 * 125.76930 * 0.03141 * 3 2 1 5 5 O 1.21598 * 119.99998 * 359.71669 * 4 3 2 6 6 N 1.34775 * 120.00193 * 179.72501 * 4 3 2 7 7 C 1.46495 * 120.00557 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.47438 * 179.97438 * 7 6 4 9 9 H 1.08995 * 110.77871 * 51.76293 * 8 7 6 10 10 C 1.54327 * 110.71795 * 288.52442 * 8 7 6 11 11 N 1.47029 * 107.26790 * 219.44300 * 10 8 7 12 12 C 1.36939 * 125.64538 * 178.98666 * 11 10 8 13 13 H 1.08001 * 120.00082 * 0.02562 * 12 11 10 14 14 C 1.38807 * 119.99535 * 179.97438 * 12 11 10 15 15 N 1.31618 * 120.00389 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99765 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47216 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47251 * 120.00191 * 16 14 12 19 19 H 1.48497 * 109.47371 * 240.00271 * 16 14 12 20 20 C 1.47424 * 108.70208 * 358.94247 * 11 10 8 21 21 C 1.54903 * 104.83433 * 24.12654 * 20 11 10 22 22 H 1.09003 * 111.03646 * 204.90257 * 21 20 11 23 23 O 1.42905 * 111.00435 * 81.06596 * 21 20 11 24 24 N 1.34397 * 108.45562 * 179.77145 * 3 2 1 25 25 N 1.28754 * 109.52709 * 0.22621 * 24 3 2 26 26 N 1.34809 * 126.58046 * 180.15592 * 2 1 3 27 27 C 1.46496 * 126.59783 * 359.97438 * 26 2 1 28 28 H 1.08997 * 109.46615 * 90.00777 * 1 2 3 29 29 H 1.09004 * 109.46945 * 210.00592 * 1 2 3 30 30 H 1.08994 * 109.47236 * 330.00767 * 1 2 3 31 31 H 0.97006 * 119.99555 * 359.97438 * 6 4 3 32 32 H 1.09004 * 109.46807 * 59.99426 * 7 6 4 33 33 H 1.09003 * 109.47124 * 299.99661 * 7 6 4 34 34 H 1.09001 * 109.88594 * 338.85611 * 10 8 7 35 35 H 1.08993 * 109.88237 * 100.02754 * 10 8 7 36 36 H 0.96998 * 120.00010 * 179.97438 * 15 14 12 37 37 H 1.09003 * 110.36356 * 265.28931 * 20 11 10 38 38 H 1.09000 * 110.36592 * 142.97062 * 20 11 10 39 39 H 0.96705 * 113.99788 * 67.80291 * 23 21 20 40 40 H 1.09004 * 109.47100 * 270.23830 * 27 26 2 41 41 H 1.09004 * 109.47152 * 30.23974 * 27 26 2 42 42 H 1.09001 * 109.47557 * 150.24183 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8737 2.5027 0.0007 5 8 0.6859 2.7627 -0.0039 6 7 2.7816 3.4988 0.0062 7 6 2.3374 4.8948 0.0063 8 6 3.5573 5.8182 0.0137 9 1 4.2502 5.5500 -0.7838 10 6 4.2627 5.7798 1.3858 11 7 4.6872 7.1527 1.6969 12 6 5.3331 7.5492 2.8374 13 1 5.5723 6.8251 3.6021 14 6 5.6814 8.8818 3.0101 15 7 5.3904 9.7642 2.0779 16 14 6.5619 9.4229 4.5662 17 1 6.7711 8.2483 5.4505 18 1 7.8767 10.0147 4.2107 19 1 5.7384 10.4356 5.2742 20 6 4.3033 8.0314 0.5771 21 6 3.1232 7.3024 -0.1124 22 1 3.0387 7.5972 -1.1584 23 8 1.8979 7.5387 0.5841 24 7 3.5983 0.6789 0.0051 25 7 3.6299 -0.6082 0.0035 26 7 2.3104 -1.0825 -0.0029 27 6 1.8865 -2.4848 -0.0062 28 1 -0.3632 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 3.7292 3.2913 0.0101 32 1 1.7335 5.0839 0.8938 33 1 1.7416 5.0866 -0.8862 34 1 3.5704 5.4241 2.1488 35 1 5.1326 5.1249 1.3372 36 1 5.6335 10.6954 2.1988 37 1 5.1357 8.1467 -0.1172 38 1 3.9824 9.0038 0.9507 39 1 1.5867 8.4529 0.5335 40 1 1.7776 -2.8339 1.0206 41 1 0.9313 -2.5744 -0.5237 42 1 2.6351 -3.0896 -0.5181 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957951705.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:00 Heat of formation + Delta-G solvation = 40.373874 kcal Electronic energy + Delta-G solvation = -25476.683207 eV Core-core repulsion = 21688.036726 eV Total energy + Delta-G solvation = -3788.646481 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.44417 -39.38221 -38.11796 -35.28575 -34.76731 -34.43945 -32.54628 -32.10585 -29.85640 -28.42350 -27.76714 -27.50734 -25.46187 -23.99186 -22.85073 -21.26721 -20.66544 -20.08113 -19.56374 -18.00907 -17.24322 -16.67779 -16.47464 -15.91382 -15.67834 -15.01268 -14.79492 -14.43304 -14.21577 -14.10106 -13.74615 -13.71842 -13.55306 -13.35474 -13.00840 -12.88371 -12.63364 -12.27779 -12.12802 -11.88138 -11.36740 -11.31595 -11.19802 -10.78063 -10.59356 -10.46065 -10.31243 -10.22374 -9.97952 -9.80137 -9.76030 -9.35776 -9.05468 -8.79976 -8.63734 -6.78685 -5.64456 -3.03903 0.90252 1.61242 1.77186 3.25187 3.32166 3.42035 3.47771 3.50201 3.98543 4.05324 4.35164 4.50636 4.53843 4.58078 4.79296 4.81251 5.01909 5.14650 5.21596 5.37552 5.38902 5.45572 5.52497 5.56788 5.67022 5.74041 5.97553 6.11987 6.14726 6.18128 6.40475 6.49637 6.59145 6.73813 6.93236 7.33746 7.54537 7.63374 7.79995 7.83485 8.26697 8.29228 8.42192 9.23763 9.85090 10.49329 11.40655 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.022325 B = 0.002885 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.918199 B = 9701.624816 C =10467.047893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.121 3.879 3 C -0.103 4.103 4 C 0.603 3.397 5 O -0.541 6.541 6 N -0.710 5.710 7 C 0.142 3.858 8 C -0.107 4.107 9 H 0.087 0.913 10 C 0.144 3.856 11 N -0.598 5.598 12 C -0.215 4.215 13 H 0.078 0.922 14 C -0.014 4.014 15 N -0.926 5.926 16 Si 0.915 3.085 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.291 1.291 20 C 0.126 3.874 21 C 0.082 3.918 22 H 0.054 0.946 23 O -0.557 6.557 24 N -0.200 5.200 25 N -0.069 5.069 26 N -0.368 5.368 27 C 0.088 3.912 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.114 0.886 31 H 0.408 0.592 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.029 0.971 35 H 0.021 0.979 36 H 0.251 0.749 37 H 0.019 0.981 38 H 0.112 0.888 39 H 0.375 0.625 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.599 -20.934 -8.034 24.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.016 4.016 3 C -0.242 4.242 4 C 0.386 3.614 5 O -0.418 6.418 6 N -0.360 5.360 7 C 0.019 3.981 8 C -0.126 4.126 9 H 0.105 0.895 10 C 0.018 3.982 11 N -0.324 5.324 12 C -0.343 4.343 13 H 0.096 0.904 14 C -0.209 4.209 15 N -0.576 5.576 16 Si 0.746 3.254 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.218 1.218 20 C 0.001 3.999 21 C 0.022 3.978 22 H 0.072 0.928 23 O -0.363 6.363 24 N -0.073 5.073 25 N -0.049 5.049 26 N -0.154 5.154 27 C -0.054 4.054 28 H 0.109 0.891 29 H 0.093 0.907 30 H 0.132 0.868 31 H 0.243 0.757 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.039 0.961 36 H 0.061 0.939 37 H 0.037 0.963 38 H 0.129 0.871 39 H 0.221 0.779 40 H 0.107 0.893 41 H 0.114 0.886 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.797 -21.626 -7.784 24.985 hybrid contribution 0.134 0.753 0.615 0.981 sum -9.663 -20.874 -7.169 24.093 Atomic orbital electron populations 1.20721 0.84607 1.05489 1.04600 1.21929 0.96252 0.86321 0.97141 1.21303 0.88960 0.95637 1.18335 1.16677 0.85638 0.82390 0.76652 1.90757 1.15879 1.83609 1.51565 1.45929 1.10219 1.06448 1.73381 1.21292 0.96432 0.77374 1.03009 1.22512 0.96138 0.94204 0.99736 0.89492 1.21336 0.95473 0.88843 0.92567 1.44361 1.67848 1.01705 1.18468 1.19148 1.28192 0.92797 0.94168 0.90424 1.24754 1.01738 0.95876 0.98520 1.69756 1.52664 1.01946 1.33239 0.85980 0.78844 0.78317 0.82283 1.20538 1.21834 1.21780 1.22584 0.91760 0.96958 0.88599 1.23206 0.86492 0.94264 0.93861 0.92769 1.86395 1.39511 1.32967 1.77387 1.74614 1.19110 1.04098 1.09513 1.82002 0.95897 1.03491 1.23492 1.50282 1.06539 1.07731 1.50820 1.22149 1.02394 0.76131 1.04679 0.89059 0.90739 0.86778 0.75718 0.89998 0.91486 0.95347 0.96095 0.93859 0.96338 0.87066 0.77872 0.89304 0.88564 0.88049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.70 9.38 36.01 0.34 -0.36 16 2 C 0.12 1.29 7.02 -81.87 -0.57 0.71 16 3 C -0.10 -1.41 6.99 -83.55 -0.58 -2.00 16 4 C 0.60 9.22 7.82 -12.48 -0.10 9.12 16 5 O -0.54 -9.08 14.72 5.28 0.08 -9.01 16 6 N -0.71 -10.71 5.47 -61.35 -0.34 -11.05 16 7 C 0.14 2.32 4.50 -4.04 -0.02 2.30 16 8 C -0.11 -1.88 2.89 -88.78 -0.26 -2.14 16 9 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 10 C 0.14 3.10 6.75 -3.06 -0.02 3.07 16 11 N -0.60 -15.53 3.39 -170.07 -0.58 -16.11 16 12 C -0.21 -6.10 10.27 -15.06 -0.15 -6.26 16 13 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 14 C -0.01 -0.40 5.49 -17.43 -0.10 -0.50 16 15 N -0.93 -26.95 10.09 55.49 0.56 -26.39 16 16 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 C 0.13 3.01 5.62 -2.53 -0.01 3.00 16 21 C 0.08 1.54 4.17 -24.59 -0.10 1.44 16 22 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 23 O -0.56 -10.38 12.33 -35.23 -0.43 -10.82 16 24 N -0.20 -2.90 12.04 32.85 0.40 -2.51 16 25 N -0.07 -0.90 13.78 60.35 0.83 -0.07 16 26 N -0.37 -3.49 4.03 -63.59 -0.26 -3.74 16 27 C 0.09 0.33 11.17 59.84 0.67 1.00 16 28 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.31 7.84 -51.93 -0.41 -0.09 16 30 H 0.11 1.08 6.43 -51.93 -0.33 0.75 16 31 H 0.41 5.84 8.16 -40.82 -0.33 5.50 16 32 H 0.08 1.53 7.52 -51.93 -0.39 1.14 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.03 0.64 7.68 -51.93 -0.40 0.24 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.11 2.95 5.87 -51.93 -0.31 2.65 16 39 H 0.37 5.69 9.12 45.56 0.42 6.11 16 40 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 41 H 0.10 0.12 7.78 -51.93 -0.40 -0.28 16 42 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 350.47 15.07 5.28 5.28 Total: -1.00 -35.54 350.47 -5.48 -41.01 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.08 Total: 6.60 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: -0.91 Total: 9.39 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: 0.62 Total: -59.87 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.36 Total: -19.82 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.54 -5.48 -41.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957951705.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.389 kcal (2) G-P(sol) polarization free energy of solvation -35.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds