Wall clock time and date at job start Fri Apr 10 2020 18:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.44587 * 2 1 4 4 C 1.53042 * 109.45776 * 240.03568 * 2 1 3 5 5 C 1.53193 * 109.30848 * 178.61365 * 4 2 1 6 6 N 1.46930 * 108.77808 * 54.63623 * 5 4 2 7 7 C 1.36931 * 120.63014 * 126.41286 * 6 5 4 8 8 H 1.08004 * 120.00355 * 331.81655 * 7 6 5 9 9 C 1.38809 * 119.99710 * 151.82632 * 7 6 5 10 10 N 1.31622 * 120.00294 * 343.06634 * 9 7 6 11 11 Si 1.86807 * 120.00008 * 163.07383 * 9 7 6 12 12 H 1.48501 * 109.47029 * 59.99513 * 11 9 7 13 13 H 1.48500 * 109.46987 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46916 * 299.99597 * 11 9 7 15 15 C 1.46926 * 118.73368 * 306.38847 * 6 5 4 16 16 C 1.53033 * 109.46045 * 119.96677 * 2 1 3 17 17 H 1.09004 * 109.49987 * 301.36665 * 16 2 1 18 18 N 1.46505 * 109.49816 * 61.43472 * 16 2 1 19 19 C 1.34777 * 119.99588 * 204.99849 * 18 16 2 20 20 O 1.21280 * 120.00341 * 0.02562 * 19 18 16 21 21 C 1.50699 * 119.99771 * 179.97438 * 19 18 16 22 22 N 1.46492 * 109.47487 * 180.02562 * 21 19 18 23 23 C 1.36612 * 127.12254 * 264.97697 * 22 21 19 24 24 N 1.30325 * 107.28321 * 180.02562 * 23 22 21 25 25 N 1.28540 * 109.99273 * 359.73184 * 24 23 22 26 26 C 1.31027 * 109.85721 * 0.44749 * 25 24 23 27 27 O 1.35537 * 126.44391 * 179.82518 * 26 25 24 28 28 H 1.09006 * 109.47233 * 300.03393 * 1 2 3 29 29 H 1.09000 * 109.47276 * 60.03432 * 1 2 3 30 30 H 1.09000 * 109.47181 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.49693 * 298.56445 * 4 2 1 32 32 H 1.08997 * 109.49577 * 58.66309 * 4 2 1 33 33 H 1.09004 * 109.58247 * 174.42193 * 5 4 2 34 34 H 1.08998 * 109.58942 * 294.70359 * 5 4 2 35 35 H 0.96993 * 119.99827 * 180.02562 * 10 9 7 36 36 H 1.08998 * 109.58973 * 293.82008 * 15 6 5 37 37 H 1.09003 * 109.58197 * 173.39293 * 15 6 5 38 38 H 0.96991 * 119.99561 * 24.99977 * 18 16 2 39 39 H 1.09008 * 109.47076 * 60.00013 * 21 19 18 40 40 H 1.08997 * 109.47439 * 300.00422 * 21 19 18 41 41 H 1.08001 * 126.35202 * 0.04029 * 23 22 21 42 42 H 0.96707 * 113.99851 * 269.69222 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7207 -1.2501 5 6 3.5713 -0.6885 -1.2643 6 7 4.0679 -1.2488 0.0000 7 6 4.9764 -2.2733 -0.0001 8 1 5.0044 -2.9703 -0.8246 9 6 5.8614 -2.4161 1.0597 10 7 6.0659 -1.4123 1.8862 11 14 6.7624 -4.0328 1.3129 12 1 7.5862 -4.3333 0.1144 13 1 7.6424 -3.9277 2.5044 14 1 5.7750 -5.1224 1.5208 15 6 3.5714 -0.6885 1.2642 16 6 2.0398 -0.7207 1.2500 17 1 1.6568 -0.2210 2.1398 18 7 1.5801 -2.1117 1.2342 19 6 1.4516 -2.7921 2.3905 20 8 1.7161 -2.2528 3.4441 21 6 0.9782 -4.2227 2.3743 22 7 0.9226 -4.7343 3.7458 23 6 1.8882 -5.4455 4.4003 24 7 1.4367 -5.7022 5.5956 25 7 0.2624 -5.1995 5.7392 26 6 -0.1033 -4.5999 4.6331 27 8 -1.2785 -3.9610 4.4143 28 1 -0.3634 0.5144 0.8897 29 1 -0.3634 0.5133 -0.8903 30 1 -0.3633 -1.0277 0.0005 31 1 1.6977 -1.7556 -1.2384 32 1 1.6571 -0.2206 -2.1398 33 1 3.9416 -1.2845 -2.0985 34 1 3.9142 0.3407 -1.3699 35 1 6.6846 -1.5121 2.6265 36 1 3.9142 0.3410 1.3673 37 1 3.9417 -1.2845 2.0984 38 1 1.3683 -2.5428 0.3916 39 1 1.6700 -4.8277 1.7882 40 1 -0.0150 -4.2717 1.9281 41 1 2.8475 -5.7400 4.0012 42 1 -1.9740 -4.5289 4.0551 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000965900226.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:09 Heat of formation + Delta-G solvation = 37.451100 kcal Electronic energy + Delta-G solvation = -27058.502652 eV Core-core repulsion = 23269.729430 eV Total energy + Delta-G solvation = -3788.773222 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.98141 -39.81642 -37.85971 -37.68162 -34.73485 -34.26572 -33.01559 -31.14822 -29.88555 -29.72165 -28.12794 -27.22666 -24.18518 -22.87090 -22.38852 -22.14966 -21.21807 -20.79820 -19.00624 -18.77392 -17.75637 -16.99752 -16.56058 -16.01832 -15.60042 -15.10312 -15.03252 -14.75493 -14.29802 -14.02862 -13.91567 -13.58494 -13.41582 -13.23214 -12.73799 -12.47486 -12.42345 -12.07788 -11.70180 -11.63456 -11.51328 -11.21569 -11.01679 -10.82964 -10.76838 -10.62221 -10.34365 -10.25668 -10.03811 -9.82167 -9.63381 -9.44658 -9.15000 -8.58457 -8.55777 -6.75313 -5.86456 -3.30753 1.60438 2.02337 2.79865 2.82048 3.27692 3.34119 3.39158 3.41997 3.68869 4.39940 4.44781 4.64574 4.77986 4.83750 5.08075 5.11722 5.22663 5.24695 5.31572 5.44051 5.64683 5.74884 5.81098 5.86205 5.88435 6.03528 6.16461 6.24045 6.32180 6.40863 6.45951 6.51405 6.63918 6.74531 6.85458 7.21967 7.24954 7.54598 7.69444 7.82304 8.36430 8.48434 8.67168 9.11318 9.75319 10.31738 11.21333 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.011497 B = 0.006147 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.731290 B = 4554.008521 C = 6430.247316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.079 0.921 4 C -0.128 4.128 5 C 0.141 3.859 6 N -0.587 5.587 7 C -0.259 4.259 8 H 0.064 0.936 9 C 0.007 3.993 10 N -0.896 5.896 11 Si 0.899 3.101 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.285 1.285 15 C 0.161 3.839 16 C 0.127 3.873 17 H 0.076 0.924 18 N -0.690 5.690 19 C 0.497 3.503 20 O -0.525 6.525 21 C 0.087 3.913 22 N -0.467 5.467 23 C 0.181 3.819 24 N -0.285 5.285 25 N -0.289 5.289 26 C 0.357 3.643 27 O -0.433 6.433 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.018 0.982 35 H 0.256 0.744 36 H 0.026 0.974 37 H 0.096 0.904 38 H 0.396 0.604 39 H 0.131 0.869 40 H 0.118 0.882 41 H 0.225 0.775 42 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.154 -4.232 -6.009 15.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.097 0.903 4 C -0.167 4.167 5 C 0.015 3.985 6 N -0.310 5.310 7 C -0.389 4.389 8 H 0.081 0.919 9 C -0.192 4.192 10 N -0.539 5.539 11 Si 0.729 3.271 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.212 1.212 15 C 0.034 3.966 16 C 0.022 3.978 17 H 0.094 0.906 18 N -0.342 5.342 19 C 0.279 3.721 20 O -0.401 6.401 21 C -0.040 4.040 22 N -0.170 5.170 23 C -0.106 4.106 24 N -0.125 5.125 25 N -0.140 5.140 26 C 0.053 3.947 27 O -0.232 6.232 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.036 0.964 35 H 0.066 0.934 36 H 0.044 0.956 37 H 0.114 0.886 38 H 0.231 0.769 39 H 0.149 0.851 40 H 0.136 0.864 41 H 0.241 0.759 42 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -13.724 -3.760 -3.510 14.656 hybrid contribution 0.292 -0.684 -1.966 2.103 sum -13.432 -4.444 -5.476 15.171 Atomic orbital electron populations 1.21846 0.95932 1.01238 1.01097 1.21321 0.94623 1.00008 0.95385 0.90316 1.22074 0.99256 0.99282 0.96100 1.20940 0.90658 0.96626 0.90301 1.43976 1.48321 1.39598 0.99063 1.19029 1.10086 1.03124 1.06650 0.91850 1.25057 0.97063 0.97229 0.99898 1.69979 1.37011 1.28987 1.17902 0.86444 0.79503 0.83693 0.77482 1.20909 1.21528 1.21181 1.21190 0.86520 0.97932 0.90985 1.21841 0.99039 0.79871 0.97064 0.90592 1.45710 1.66551 1.14276 1.07624 1.20229 0.79264 0.87503 0.85069 1.90795 1.49560 1.69050 1.30661 1.21755 1.05750 0.95658 0.80834 1.46420 1.15615 1.41705 1.13225 1.26430 0.96562 0.96569 0.91018 1.74202 1.03977 1.19875 1.14484 1.74551 1.08104 1.13249 1.18064 1.22022 0.86455 0.99171 0.87079 1.84985 1.17265 1.35711 1.85212 0.93075 0.93056 0.93174 0.92784 0.92707 0.92784 0.96435 0.93379 0.95600 0.88568 0.76907 0.85087 0.86389 0.75894 0.74321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.05 37.16 0.34 -1.29 16 2 C -0.09 -1.33 2.48 -90.58 -0.22 -1.55 16 3 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 4 C -0.13 -1.78 5.20 -26.61 -0.14 -1.92 16 5 C 0.14 2.58 6.52 -3.71 -0.02 2.56 16 6 N -0.59 -13.14 2.91 -172.32 -0.50 -13.64 16 7 C -0.26 -6.51 9.58 -15.06 -0.14 -6.66 16 8 H 0.06 1.55 7.89 -52.48 -0.41 1.14 16 9 C 0.01 0.19 4.92 -17.43 -0.09 0.11 16 10 N -0.90 -25.50 11.20 55.49 0.62 -24.88 16 11 Si 0.90 20.73 29.59 -169.99 -5.03 15.70 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 15 C 0.16 3.61 4.90 -3.71 -0.02 3.59 16 16 C 0.13 2.21 2.24 -67.81 -0.15 2.06 16 17 H 0.08 1.42 7.58 -51.93 -0.39 1.03 16 18 N -0.69 -10.36 4.25 -53.69 -0.23 -10.59 16 19 C 0.50 8.01 7.87 -10.99 -0.09 7.92 16 20 O -0.52 -11.28 16.09 5.56 0.09 -11.19 16 21 C 0.09 0.97 6.69 -5.20 -0.03 0.93 16 22 N -0.47 -6.43 2.29 -121.05 -0.28 -6.71 16 23 C 0.18 2.65 12.80 -89.07 -1.14 1.51 16 24 N -0.28 -4.93 12.18 29.87 0.36 -4.56 16 25 N -0.29 -5.07 12.22 29.64 0.36 -4.71 16 26 C 0.36 5.34 9.22 -88.77 -0.82 4.52 16 27 O -0.43 -5.13 13.62 -18.30 -0.25 -5.38 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.52 7.54 -51.93 -0.39 0.13 16 31 H 0.05 0.71 6.40 -51.93 -0.33 0.38 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.97 7.93 -51.93 -0.41 0.56 16 34 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.10 2.58 6.06 -51.93 -0.31 2.27 16 38 H 0.40 4.94 6.64 -40.82 -0.27 4.67 16 39 H 0.13 1.16 8.14 -51.92 -0.42 0.74 16 40 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.22 2.56 8.06 -52.49 -0.42 2.14 16 42 H 0.40 2.11 9.06 45.56 0.41 2.52 16 LS Contribution 347.73 15.07 5.24 5.24 Total: -1.00 -35.98 347.73 -7.19 -43.17 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -5.06 Total: 5.75 kcal Atomic # 6 Polarization: 14.31 SS G_CDS: -2.53 Total: 11.78 kcal Atomic # 7 Polarization: -65.43 SS G_CDS: 0.34 Total: -65.08 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.16 Total: -16.57 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.98 -7.19 -43.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965900226.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.626 kcal (2) G-P(sol) polarization free energy of solvation -35.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds