Wall clock time and date at job start Fri Apr 10 2020 18:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.44587 * 2 1 4 4 C 1.53042 * 109.45776 * 240.03568 * 2 1 3 5 5 C 1.53193 * 109.30848 * 178.61365 * 4 2 1 6 6 N 1.46930 * 108.77808 * 54.63623 * 5 4 2 7 7 C 1.36931 * 120.63014 * 126.41286 * 6 5 4 8 8 H 1.08004 * 120.00355 * 331.81655 * 7 6 5 9 9 C 1.38809 * 119.99710 * 151.82632 * 7 6 5 10 10 N 1.31622 * 120.00294 * 343.06634 * 9 7 6 11 11 Si 1.86807 * 120.00008 * 163.07383 * 9 7 6 12 12 H 1.48501 * 109.47029 * 59.99513 * 11 9 7 13 13 H 1.48500 * 109.46987 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46916 * 299.99597 * 11 9 7 15 15 C 1.46926 * 118.73368 * 306.38847 * 6 5 4 16 16 C 1.53033 * 109.46045 * 119.96677 * 2 1 3 17 17 H 1.09004 * 109.49987 * 301.36665 * 16 2 1 18 18 N 1.46505 * 109.49816 * 61.43472 * 16 2 1 19 19 C 1.34777 * 119.99588 * 204.99849 * 18 16 2 20 20 O 1.21280 * 120.00341 * 0.02562 * 19 18 16 21 21 C 1.50699 * 119.99771 * 179.97438 * 19 18 16 22 22 N 1.46492 * 109.47487 * 180.02562 * 21 19 18 23 23 C 1.36612 * 127.12254 * 264.97697 * 22 21 19 24 24 N 1.30325 * 107.28321 * 180.02562 * 23 22 21 25 25 N 1.28540 * 109.99273 * 359.73184 * 24 23 22 26 26 C 1.31027 * 109.85721 * 0.44749 * 25 24 23 27 27 O 1.35537 * 126.44391 * 179.82518 * 26 25 24 28 28 H 1.09006 * 109.47233 * 300.03393 * 1 2 3 29 29 H 1.09000 * 109.47276 * 60.03432 * 1 2 3 30 30 H 1.09000 * 109.47181 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.49693 * 298.56445 * 4 2 1 32 32 H 1.08997 * 109.49577 * 58.66309 * 4 2 1 33 33 H 1.09004 * 109.58247 * 174.42193 * 5 4 2 34 34 H 1.08998 * 109.58942 * 294.70359 * 5 4 2 35 35 H 0.96993 * 119.99827 * 180.02562 * 10 9 7 36 36 H 1.08998 * 109.58973 * 293.82008 * 15 6 5 37 37 H 1.09003 * 109.58197 * 173.39293 * 15 6 5 38 38 H 0.96991 * 119.99561 * 24.99977 * 18 16 2 39 39 H 1.09008 * 109.47076 * 60.00013 * 21 19 18 40 40 H 1.08997 * 109.47439 * 300.00422 * 21 19 18 41 41 H 1.08001 * 126.35202 * 0.04029 * 23 22 21 42 42 H 0.96707 * 113.99851 * 269.69222 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7207 -1.2501 5 6 3.5713 -0.6885 -1.2643 6 7 4.0679 -1.2488 0.0000 7 6 4.9764 -2.2733 -0.0001 8 1 5.0044 -2.9703 -0.8246 9 6 5.8614 -2.4161 1.0597 10 7 6.0659 -1.4123 1.8862 11 14 6.7624 -4.0328 1.3129 12 1 7.5862 -4.3333 0.1144 13 1 7.6424 -3.9277 2.5044 14 1 5.7750 -5.1224 1.5208 15 6 3.5714 -0.6885 1.2642 16 6 2.0398 -0.7207 1.2500 17 1 1.6568 -0.2210 2.1398 18 7 1.5801 -2.1117 1.2342 19 6 1.4516 -2.7921 2.3905 20 8 1.7161 -2.2528 3.4441 21 6 0.9782 -4.2227 2.3743 22 7 0.9226 -4.7343 3.7458 23 6 1.8882 -5.4455 4.4003 24 7 1.4367 -5.7022 5.5956 25 7 0.2624 -5.1995 5.7392 26 6 -0.1033 -4.5999 4.6331 27 8 -1.2785 -3.9610 4.4143 28 1 -0.3634 0.5144 0.8897 29 1 -0.3634 0.5133 -0.8903 30 1 -0.3633 -1.0277 0.0005 31 1 1.6977 -1.7556 -1.2384 32 1 1.6571 -0.2206 -2.1398 33 1 3.9416 -1.2845 -2.0985 34 1 3.9142 0.3407 -1.3699 35 1 6.6846 -1.5121 2.6265 36 1 3.9142 0.3410 1.3673 37 1 3.9417 -1.2845 2.0984 38 1 1.3683 -2.5428 0.3916 39 1 1.6700 -4.8277 1.7882 40 1 -0.0150 -4.2717 1.9281 41 1 2.8475 -5.7400 4.0012 42 1 -1.9740 -4.5289 4.0551 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000965900226.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:09 Heat of formation + Delta-G solvation = 8.995683 kcal Electronic energy + Delta-G solvation = -27059.736571 eV Core-core repulsion = 23269.729430 eV Total energy + Delta-G solvation = -3790.007141 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.08442 -41.15580 -39.22096 -38.66867 -35.98411 -35.78172 -34.39161 -32.83542 -31.23516 -30.91830 -29.30968 -28.66013 -25.81564 -24.17156 -23.53758 -23.37289 -22.74094 -21.96705 -20.33580 -19.90117 -18.92244 -18.62430 -17.77686 -17.17690 -16.80551 -16.74417 -16.20490 -16.07829 -15.68633 -15.43537 -15.17751 -14.86216 -14.77486 -14.67352 -14.09468 -13.60216 -13.44155 -13.41782 -13.11858 -12.99255 -12.79908 -12.69346 -12.54844 -12.47251 -12.25527 -11.97066 -11.92623 -11.54978 -11.35025 -11.30356 -11.06605 -10.76341 -10.51152 -10.29292 -9.99883 -8.63846 -7.84304 -5.30440 0.54184 1.04581 1.45616 1.47008 1.55773 1.58753 1.68727 2.27025 2.51951 2.74650 3.31667 3.58572 3.61847 3.69039 3.76770 3.90355 3.99839 4.05856 4.13207 4.18341 4.52569 4.63073 4.67491 4.72591 4.81170 4.90181 4.91205 4.97221 5.10035 5.19064 5.26566 5.27175 5.47445 5.52812 5.53732 5.61742 5.69637 5.71504 6.39882 6.45641 6.60890 7.15506 7.29805 7.53871 7.88939 8.40928 9.20586 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.011497 B = 0.006147 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.731290 B = 4554.008521 C = 6430.247316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.088 4.088 3 H 0.068 0.932 4 C -0.113 4.113 5 C 0.134 3.866 6 N -0.598 5.598 7 C -0.249 4.249 8 H 0.077 0.923 9 C -0.053 4.053 10 N -0.939 5.939 11 Si 0.955 3.045 12 H -0.276 1.276 13 H -0.311 1.311 14 H -0.261 1.261 15 C 0.172 3.828 16 C 0.141 3.859 17 H 0.055 0.945 18 N -0.678 5.678 19 C 0.489 3.511 20 O -0.587 6.587 21 C 0.094 3.906 22 N -0.467 5.467 23 C 0.181 3.819 24 N -0.322 5.322 25 N -0.333 5.333 26 C 0.367 3.633 27 O -0.437 6.437 28 H 0.043 0.957 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.005 0.995 35 H 0.242 0.758 36 H -0.013 1.013 37 H 0.049 0.951 38 H 0.413 0.587 39 H 0.163 0.837 40 H 0.170 0.830 41 H 0.250 0.750 42 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.782 -5.842 -9.298 20.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.107 4.107 3 H 0.086 0.914 4 C -0.152 4.152 5 C 0.008 3.992 6 N -0.321 5.321 7 C -0.379 4.379 8 H 0.094 0.906 9 C -0.249 4.249 10 N -0.585 5.585 11 Si 0.784 3.216 12 H -0.201 1.201 13 H -0.238 1.238 14 H -0.186 1.186 15 C 0.045 3.955 16 C 0.035 3.965 17 H 0.073 0.927 18 N -0.329 5.329 19 C 0.275 3.725 20 O -0.468 6.468 21 C -0.032 4.032 22 N -0.169 5.169 23 C -0.107 4.107 24 N -0.161 5.161 25 N -0.183 5.183 26 C 0.060 3.940 27 O -0.240 6.240 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.023 0.977 35 H 0.051 0.949 36 H 0.005 0.995 37 H 0.067 0.933 38 H 0.251 0.749 39 H 0.180 0.820 40 H 0.188 0.812 41 H 0.266 0.734 42 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -16.427 -5.412 -6.892 18.618 hybrid contribution 1.112 -0.061 -1.033 1.519 sum -15.315 -5.473 -7.925 18.091 Atomic orbital electron populations 1.21757 0.92819 1.02589 1.01975 1.21271 0.97018 0.98905 0.93541 0.91382 1.21943 0.95244 1.00873 0.97117 1.21170 0.94000 0.95651 0.88330 1.44181 1.48157 1.39442 1.00352 1.19442 1.09067 1.03354 1.06024 0.90557 1.25808 0.98719 0.99932 1.00393 1.70192 1.38428 1.31201 1.18672 0.85520 0.78606 0.80979 0.76493 1.20138 1.23835 1.18627 1.20837 0.90199 0.94671 0.89823 1.21383 0.94985 0.81866 0.98310 0.92698 1.45536 1.65648 1.13295 1.08454 1.21182 0.77894 0.89361 0.84101 1.90784 1.52177 1.70914 1.32877 1.22067 1.09319 0.91830 0.79978 1.46533 1.14928 1.41382 1.14059 1.26969 0.97267 0.95981 0.90493 1.74097 1.04471 1.21417 1.16159 1.74429 1.08777 1.15271 1.19852 1.22080 0.87373 0.97742 0.86759 1.84942 1.17106 1.36483 1.85486 0.93756 0.90705 0.91557 0.90879 0.89279 0.92141 0.97706 0.94856 0.99471 0.93299 0.74861 0.81988 0.81217 0.73441 0.70890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 9.05 71.98 0.65 -1.82 16 2 C -0.09 -2.27 2.48 -10.77 -0.03 -2.29 16 3 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 4 C -0.11 -2.68 5.20 30.67 0.16 -2.52 16 5 C 0.13 4.63 6.52 86.36 0.56 5.19 16 6 N -0.60 -26.66 2.91 -699.08 -2.03 -28.69 16 7 C -0.25 -12.33 9.58 84.03 0.81 -11.52 16 8 H 0.08 3.56 7.89 -2.91 -0.02 3.53 16 9 C -0.05 -2.87 4.92 84.86 0.42 -2.45 16 10 N -0.94 -56.18 11.20 21.65 0.24 -55.93 16 11 Si 0.96 42.75 29.59 68.60 2.03 44.78 16 12 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 13 H -0.31 -14.91 7.11 99.48 0.71 -14.21 16 14 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 15 C 0.17 8.04 4.90 86.36 0.42 8.47 16 16 C 0.14 4.85 2.24 45.07 0.10 4.95 16 17 H 0.05 2.13 7.58 -2.38 -0.02 2.11 16 18 N -0.68 -18.72 4.25 -442.16 -1.88 -20.60 16 19 C 0.49 14.90 7.87 87.66 0.69 15.59 16 20 O -0.59 -25.60 16.09 -3.03 -0.05 -25.65 16 21 C 0.09 1.70 6.69 85.63 0.57 2.27 16 22 N -0.47 -11.81 2.29 -647.68 -1.48 -13.30 16 23 C 0.18 5.09 12.80 179.81 2.30 7.39 16 24 N -0.32 -11.17 12.18 -59.40 -0.72 -11.89 16 25 N -0.33 -11.67 12.22 -173.68 -2.12 -13.80 16 26 C 0.37 10.41 9.22 179.70 1.66 12.07 16 27 O -0.44 -9.30 13.62 -88.41 -1.20 -10.51 16 28 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.03 7.54 -2.39 -0.02 1.01 16 31 H 0.07 1.50 6.40 -2.39 -0.02 1.48 16 32 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.06 2.01 7.93 -2.38 -0.02 1.99 16 34 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.24 14.55 8.31 -92.71 -0.77 13.78 16 36 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 37 H 0.05 2.77 6.06 -2.39 -0.01 2.76 16 38 H 0.41 8.45 6.64 -92.71 -0.62 7.83 16 39 H 0.16 2.02 8.14 -2.38 -0.02 2.01 16 40 H 0.17 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.25 5.25 8.06 -2.91 -0.02 5.23 16 42 H 0.43 3.07 9.06 -74.05 -0.67 2.40 16 Total: -1.00 -85.95 347.73 0.87 -85.09 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -0.22 Total: 15.18 kcal Atomic # 6 Polarization: 27.01 SS G_CDS: 8.31 Total: 35.32 kcal Atomic # 7 Polarization: -136.21 SS G_CDS: -8.00 Total: -144.21 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: -1.25 Total: -36.16 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -85.95 0.87 -85.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965900226.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.082 kcal (2) G-P(sol) polarization free energy of solvation -85.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds