Wall clock time and date at job start Fri Apr 10 2020 18:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00133 * 2 1 4 4 C 1.50693 * 109.46979 * 179.97438 * 3 2 1 5 5 N 1.29940 * 125.37853 * 90.00465 * 4 3 2 6 6 C 1.36073 * 108.47661 * 180.02562 * 5 4 3 7 7 C 1.47412 * 126.44497 * 180.02562 * 6 5 4 8 8 O 1.21620 * 119.99618 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00326 * 0.02562 * 7 6 5 10 10 C 1.47424 * 125.64997 * 359.97438 * 9 7 6 11 11 C 1.54901 * 104.93205 * 155.83561 * 10 9 7 12 12 C 1.55445 * 101.45165 * 37.00299 * 11 10 9 13 13 H 1.09000 * 110.86108 * 82.96394 * 12 11 10 14 14 N 1.46507 * 110.70903 * 206.14623 * 12 11 10 15 15 C 1.46500 * 119.99840 * 55.00023 * 14 12 11 16 16 C 1.36930 * 119.99845 * 235.00267 * 14 12 11 17 17 H 1.07994 * 120.00562 * 23.44619 * 16 14 12 18 18 C 1.38814 * 119.99933 * 203.44272 * 16 14 12 19 19 N 1.31628 * 119.99696 * 14.52483 * 18 16 14 20 20 Si 1.86804 * 120.00253 * 194.52982 * 18 16 14 21 21 H 1.48501 * 109.47016 * 89.99792 * 20 18 16 22 22 H 1.48501 * 109.46801 * 209.99968 * 20 18 16 23 23 H 1.48495 * 109.46673 * 329.99952 * 20 18 16 24 24 C 1.47022 * 125.65023 * 180.02562 * 9 7 6 25 25 C 1.36090 * 107.10142 * 0.25756 * 6 5 4 26 26 O 1.34058 * 125.38066 * 270.04207 * 4 3 2 27 27 H 1.09000 * 109.47615 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46934 * 299.99978 * 1 2 3 29 29 H 1.08998 * 109.47579 * 59.99994 * 1 2 3 30 30 H 1.09005 * 109.46494 * 60.00078 * 3 2 1 31 31 H 1.08999 * 109.46832 * 300.00349 * 3 2 1 32 32 H 1.08999 * 110.36358 * 274.73154 * 10 9 7 33 33 H 1.09001 * 110.36547 * 36.93391 * 10 9 7 34 34 H 1.09001 * 111.00643 * 155.14046 * 11 10 9 35 35 H 1.09008 * 111.00482 * 278.99099 * 11 10 9 36 36 H 1.08994 * 109.47186 * 95.18885 * 15 14 12 37 37 H 1.09005 * 109.47136 * 215.19034 * 15 14 12 38 38 H 1.09000 * 109.47509 * 335.19073 * 15 14 12 39 39 H 0.96999 * 119.99374 * 180.02562 * 19 18 16 40 40 H 1.09001 * 109.88638 * 300.46127 * 24 9 7 41 41 H 1.09003 * 109.88433 * 61.62127 * 24 9 7 42 42 H 1.08005 * 126.52401 * 179.74051 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2629 1.1268 -1.0585 6 6 5.5605 1.0234 -0.6623 7 6 6.7399 0.9302 -1.5418 8 8 7.8527 0.8410 -1.0593 9 7 6.5849 0.9439 -2.8806 10 6 5.2999 1.0466 -3.5959 11 6 5.6610 1.6340 -4.9829 12 6 7.0216 0.9383 -5.2680 13 1 6.8688 -0.0593 -5.6797 14 7 7.8393 1.7506 -6.1724 15 6 8.1406 3.1440 -5.8351 16 6 8.3218 1.2073 -7.3330 17 1 7.8266 0.3570 -7.7781 18 6 9.4476 1.7495 -7.9377 19 7 10.2153 2.5847 -7.2701 20 14 9.8730 1.2940 -9.6987 21 1 9.2186 2.2489 -10.6288 22 1 11.3453 1.3531 -9.8833 23 1 9.3932 -0.0821 -9.9836 24 6 7.6694 0.8578 -3.8696 25 6 5.5642 1.0170 0.6985 26 8 4.2857 1.1245 1.0940 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6886 1.8463 0.8901 31 1 1.6885 1.8463 -0.8900 32 1 4.8480 0.0609 -3.7072 33 1 4.6227 1.7157 -3.0650 34 1 4.9157 1.3597 -5.7295 35 1 5.7790 2.7164 -4.9302 36 1 9.1090 3.1961 -5.3375 37 1 8.1681 3.7408 -6.7469 38 1 7.3691 3.5319 -5.1701 39 1 11.0018 2.9638 -7.6928 40 1 8.3619 1.6885 -3.7337 41 1 8.1974 -0.0894 -3.7594 42 1 6.4309 0.9423 1.3387 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972637279.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:25 Heat of formation + Delta-G solvation = -10.076026 kcal Electronic energy + Delta-G solvation = -25573.935354 eV Core-core repulsion = 21750.808450 eV Total energy + Delta-G solvation = -3823.126904 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.64639 -39.56422 -38.37426 -37.35181 -35.15594 -34.63814 -31.83491 -31.45686 -29.66488 -28.26099 -27.85735 -26.14894 -26.01702 -24.71842 -22.79560 -22.17803 -21.73785 -19.70648 -19.13212 -17.66519 -17.51272 -16.98843 -16.76072 -16.34489 -16.15612 -15.96344 -15.68812 -15.11203 -14.75948 -14.09631 -13.86184 -13.35709 -13.27126 -13.24089 -12.88058 -12.63442 -12.45164 -12.11264 -12.03199 -11.82615 -11.58988 -11.42882 -10.89426 -10.87713 -10.73131 -10.48545 -10.42528 -10.32507 -10.20835 -9.95198 -9.82821 -9.73181 -9.31918 -8.55438 -8.23070 -6.78219 -5.73938 -3.22033 0.90684 1.71225 2.24507 3.07535 3.31557 3.38937 3.43394 3.45685 3.46789 3.84432 4.44800 4.47260 4.53991 4.70327 4.81329 4.85783 4.93481 5.16378 5.22965 5.28756 5.31720 5.43170 5.43999 5.63347 5.70699 5.75475 5.96639 6.03684 6.22292 6.40950 6.47092 6.47295 6.61760 6.70170 6.85736 6.92702 7.25363 7.34006 7.73220 7.80039 7.81239 8.31566 8.38288 9.20523 9.83240 10.32961 11.30126 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.024863 B = 0.002907 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.891241 B = 9628.255788 C =10384.809393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.162 3.838 4 C 0.185 3.815 5 N -0.430 5.430 6 C -0.059 4.059 7 C 0.605 3.395 8 O -0.543 6.543 9 N -0.592 5.592 10 C 0.105 3.895 11 C -0.155 4.155 12 C 0.172 3.828 13 H 0.079 0.921 14 N -0.585 5.585 15 C 0.158 3.842 16 C -0.261 4.261 17 H 0.071 0.929 18 C 0.004 3.996 19 N -0.903 5.903 20 Si 0.907 3.093 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.087 3.913 25 C 0.018 3.982 26 O -0.192 6.192 27 H 0.092 0.908 28 H 0.046 0.954 29 H 0.049 0.951 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.033 0.967 37 H 0.041 0.959 38 H 0.004 0.996 39 H 0.254 0.746 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.586 -1.521 16.137 25.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.303 6.303 3 C 0.085 3.915 4 C -0.023 4.023 5 N -0.162 5.162 6 C -0.180 4.180 7 C 0.392 3.608 8 O -0.422 6.422 9 N -0.324 5.324 10 C -0.018 4.018 11 C -0.195 4.195 12 C 0.062 3.938 13 H 0.097 0.903 14 N -0.305 5.305 15 C 0.013 3.987 16 C -0.391 4.391 17 H 0.088 0.912 18 C -0.195 4.195 19 N -0.547 5.547 20 Si 0.737 3.263 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.204 1.204 24 C -0.037 4.037 25 C -0.056 4.056 26 O -0.077 6.077 27 H 0.111 0.889 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.022 0.978 39 H 0.064 0.936 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -18.947 -1.616 15.758 24.696 hybrid contribution 0.524 -0.032 -0.189 0.558 sum -18.423 -1.648 15.569 24.177 Atomic orbital electron populations 1.22833 0.79337 1.03621 1.00556 1.87970 1.20780 1.25927 1.95596 1.20508 0.80852 0.86489 1.03665 1.25692 0.95375 1.02550 0.78725 1.70901 1.01052 1.15099 1.29184 1.21901 0.92055 1.11011 0.93010 1.16362 0.85874 0.77799 0.80771 1.90826 1.24469 1.52213 1.74690 1.48319 1.10460 1.69444 1.04146 1.22494 0.85345 1.01228 0.92741 1.23425 0.99739 1.01538 0.94755 1.21441 0.89509 0.95138 0.87717 0.90287 1.43925 1.58749 1.07537 1.20294 1.20805 0.96107 0.83922 0.97816 1.19226 1.06919 1.14724 0.98211 0.91169 1.25074 0.95523 0.99873 0.98993 1.70085 1.15186 1.34139 1.35242 0.86222 0.77235 0.78171 0.84693 1.21460 1.21764 1.20413 1.23006 0.89816 1.02092 0.88813 1.25348 0.84721 0.99781 0.95765 1.84366 1.17141 1.68504 1.37680 0.88916 0.93527 0.93222 0.89978 0.88350 0.91820 0.89243 0.90437 0.90622 0.94906 0.94022 0.97790 0.93631 0.90642 0.91944 0.75016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.40 10.69 -35.23 -0.38 -3.78 16 3 C 0.16 1.20 6.56 36.00 0.24 1.43 16 4 C 0.19 2.07 7.93 -13.08 -0.10 1.97 16 5 N -0.43 -5.88 8.44 -7.66 -0.06 -5.95 16 6 C -0.06 -0.87 6.81 -83.02 -0.57 -1.44 16 7 C 0.61 10.96 7.85 -12.53 -0.10 10.87 16 8 O -0.54 -11.22 17.22 5.26 0.09 -11.13 16 9 N -0.59 -10.75 3.33 -171.79 -0.57 -11.32 16 10 C 0.10 1.63 6.14 -2.53 -0.02 1.62 16 11 C -0.15 -2.61 6.61 -24.43 -0.16 -2.78 16 12 C 0.17 3.53 3.45 -65.94 -0.23 3.30 16 13 H 0.08 1.59 7.93 -51.93 -0.41 1.18 16 14 N -0.58 -14.50 2.93 -171.21 -0.50 -15.00 16 15 C 0.16 3.89 7.75 59.85 0.46 4.35 16 16 C -0.26 -7.09 9.59 -15.06 -0.14 -7.24 16 17 H 0.07 1.85 7.85 -52.49 -0.41 1.44 16 18 C 0.00 0.12 5.07 -17.43 -0.09 0.04 16 19 N -0.90 -26.37 10.82 55.49 0.60 -25.77 16 20 Si 0.91 21.76 29.58 -169.99 -5.03 16.73 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C 0.09 1.77 6.51 -3.07 -0.02 1.75 16 25 C 0.02 0.21 11.94 29.96 0.36 0.57 16 26 O -0.19 -2.12 10.73 6.50 0.07 -2.05 16 27 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.05 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 1.33 6.14 -51.93 -0.32 1.01 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.08 1.35 6.15 -51.92 -0.32 1.03 16 36 H 0.03 0.89 7.25 -51.93 -0.38 0.51 16 37 H 0.04 1.09 7.42 -51.93 -0.39 0.70 16 38 H 0.00 0.08 6.13 -51.93 -0.32 -0.24 16 39 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.08 1.73 7.06 -51.93 -0.37 1.37 16 41 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.23 1.99 8.06 -52.48 -0.42 1.57 16 LS Contribution 349.70 15.07 5.27 5.27 Total: -1.00 -33.80 349.70 -5.61 -39.42 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -5.85 Total: -2.14 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: 0.75 Total: 15.72 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: -0.54 Total: -58.03 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.22 Total: -16.96 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.80 -5.61 -39.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972637279.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.341 kcal (2) G-P(sol) polarization free energy of solvation -33.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds