Wall clock time and date at job start Fri Apr 10 2020 18:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00133 * 2 1 4 4 C 1.50693 * 109.46979 * 179.97438 * 3 2 1 5 5 N 1.29940 * 125.37853 * 90.00465 * 4 3 2 6 6 C 1.36073 * 108.47661 * 180.02562 * 5 4 3 7 7 C 1.47412 * 126.44497 * 180.02562 * 6 5 4 8 8 O 1.21620 * 119.99618 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00326 * 0.02562 * 7 6 5 10 10 C 1.47424 * 125.64997 * 359.97438 * 9 7 6 11 11 C 1.54901 * 104.93205 * 155.83561 * 10 9 7 12 12 C 1.55445 * 101.45165 * 37.00299 * 11 10 9 13 13 H 1.09000 * 110.86108 * 82.96394 * 12 11 10 14 14 N 1.46507 * 110.70903 * 206.14623 * 12 11 10 15 15 C 1.46500 * 119.99840 * 55.00023 * 14 12 11 16 16 C 1.36930 * 119.99845 * 235.00267 * 14 12 11 17 17 H 1.07994 * 120.00562 * 23.44619 * 16 14 12 18 18 C 1.38814 * 119.99933 * 203.44272 * 16 14 12 19 19 N 1.31628 * 119.99696 * 14.52483 * 18 16 14 20 20 Si 1.86804 * 120.00253 * 194.52982 * 18 16 14 21 21 H 1.48501 * 109.47016 * 89.99792 * 20 18 16 22 22 H 1.48501 * 109.46801 * 209.99968 * 20 18 16 23 23 H 1.48495 * 109.46673 * 329.99952 * 20 18 16 24 24 C 1.47022 * 125.65023 * 180.02562 * 9 7 6 25 25 C 1.36090 * 107.10142 * 0.25756 * 6 5 4 26 26 O 1.34058 * 125.38066 * 270.04207 * 4 3 2 27 27 H 1.09000 * 109.47615 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46934 * 299.99978 * 1 2 3 29 29 H 1.08998 * 109.47579 * 59.99994 * 1 2 3 30 30 H 1.09005 * 109.46494 * 60.00078 * 3 2 1 31 31 H 1.08999 * 109.46832 * 300.00349 * 3 2 1 32 32 H 1.08999 * 110.36358 * 274.73154 * 10 9 7 33 33 H 1.09001 * 110.36547 * 36.93391 * 10 9 7 34 34 H 1.09001 * 111.00643 * 155.14046 * 11 10 9 35 35 H 1.09008 * 111.00482 * 278.99099 * 11 10 9 36 36 H 1.08994 * 109.47186 * 95.18885 * 15 14 12 37 37 H 1.09005 * 109.47136 * 215.19034 * 15 14 12 38 38 H 1.09000 * 109.47509 * 335.19073 * 15 14 12 39 39 H 0.96999 * 119.99374 * 180.02562 * 19 18 16 40 40 H 1.09001 * 109.88638 * 300.46127 * 24 9 7 41 41 H 1.09003 * 109.88433 * 61.62127 * 24 9 7 42 42 H 1.08005 * 126.52401 * 179.74051 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2629 1.1268 -1.0585 6 6 5.5605 1.0234 -0.6623 7 6 6.7399 0.9302 -1.5418 8 8 7.8527 0.8410 -1.0593 9 7 6.5849 0.9439 -2.8806 10 6 5.2999 1.0466 -3.5959 11 6 5.6610 1.6340 -4.9829 12 6 7.0216 0.9383 -5.2680 13 1 6.8688 -0.0593 -5.6797 14 7 7.8393 1.7506 -6.1724 15 6 8.1406 3.1440 -5.8351 16 6 8.3218 1.2073 -7.3330 17 1 7.8266 0.3570 -7.7781 18 6 9.4476 1.7495 -7.9377 19 7 10.2153 2.5847 -7.2701 20 14 9.8730 1.2940 -9.6987 21 1 9.2186 2.2489 -10.6288 22 1 11.3453 1.3531 -9.8833 23 1 9.3932 -0.0821 -9.9836 24 6 7.6694 0.8578 -3.8696 25 6 5.5642 1.0170 0.6985 26 8 4.2857 1.1245 1.0940 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6886 1.8463 0.8901 31 1 1.6885 1.8463 -0.8900 32 1 4.8480 0.0609 -3.7072 33 1 4.6227 1.7157 -3.0650 34 1 4.9157 1.3597 -5.7295 35 1 5.7790 2.7164 -4.9302 36 1 9.1090 3.1961 -5.3375 37 1 8.1681 3.7408 -6.7469 38 1 7.3691 3.5319 -5.1701 39 1 11.0018 2.9638 -7.6928 40 1 8.3619 1.6885 -3.7337 41 1 8.1974 -0.0894 -3.7594 42 1 6.4309 0.9423 1.3387 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972637279.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:24 Heat of formation + Delta-G solvation = -35.442260 kcal Electronic energy + Delta-G solvation = -25575.035317 eV Core-core repulsion = 21750.808450 eV Total energy + Delta-G solvation = -3824.226866 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.57346 -41.02736 -38.98224 -38.84949 -36.62346 -35.98475 -33.47638 -32.54124 -31.28358 -29.61920 -28.74886 -28.07231 -26.66105 -26.10797 -24.40490 -23.56885 -22.66721 -20.97974 -20.73969 -18.96021 -18.82342 -18.28190 -17.84387 -17.43231 -16.98902 -16.88923 -16.64317 -16.52063 -16.28955 -15.67540 -15.15773 -15.00320 -14.70944 -14.42644 -14.12342 -13.86803 -13.73022 -13.37355 -13.26239 -13.19988 -12.76636 -12.61849 -12.57725 -12.40901 -12.31980 -12.25198 -12.10432 -11.93784 -11.74117 -11.40282 -11.31528 -10.75936 -10.63721 -10.31627 -9.70190 -8.82553 -7.83845 -5.35009 -0.04833 0.71696 1.40787 1.48657 1.49350 1.58651 1.80252 2.09214 2.49435 2.55760 3.17480 3.27890 3.46930 3.55140 3.68958 3.84365 4.02018 4.12774 4.25558 4.27192 4.34564 4.41011 4.43339 4.56523 4.57566 4.65605 4.66202 4.77525 4.82809 4.95489 4.96823 5.05287 5.16131 5.21841 5.29907 5.39549 5.64609 5.67490 6.05254 6.27279 6.30646 6.44031 6.91261 7.11786 7.81872 8.27821 9.18949 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.024863 B = 0.002907 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.891241 B = 9628.255788 C =10384.809393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.416 6.416 3 C 0.160 3.840 4 C 0.194 3.806 5 N -0.452 5.452 6 C -0.094 4.094 7 C 0.603 3.397 8 O -0.579 6.579 9 N -0.597 5.597 10 C 0.116 3.884 11 C -0.139 4.139 12 C 0.167 3.833 13 H 0.084 0.916 14 N -0.599 5.599 15 C 0.177 3.823 16 C -0.267 4.267 17 H 0.079 0.921 18 C -0.053 4.053 19 N -0.938 5.938 20 Si 0.973 3.027 21 H -0.284 1.284 22 H -0.299 1.299 23 H -0.265 1.265 24 C 0.099 3.901 25 C 0.044 3.956 26 O -0.186 6.186 27 H 0.095 0.905 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.067 0.933 36 H -0.001 1.001 37 H 0.019 0.981 38 H 0.031 0.969 39 H 0.248 0.752 40 H 0.042 0.958 41 H 0.050 0.950 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.657 -1.995 16.906 28.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.335 6.335 3 C 0.083 3.917 4 C -0.016 4.016 5 N -0.184 5.184 6 C -0.214 4.214 7 C 0.392 3.608 8 O -0.461 6.461 9 N -0.328 5.328 10 C -0.006 4.006 11 C -0.178 4.178 12 C 0.058 3.942 13 H 0.102 0.898 14 N -0.320 5.320 15 C 0.032 3.968 16 C -0.397 4.397 17 H 0.096 0.904 18 C -0.248 4.248 19 N -0.584 5.584 20 Si 0.801 3.199 21 H -0.211 1.211 22 H -0.226 1.226 23 H -0.190 1.190 24 C -0.027 4.027 25 C -0.030 4.030 26 O -0.071 6.071 27 H 0.114 0.886 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.096 0.904 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.086 0.914 36 H 0.017 0.983 37 H 0.037 0.963 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -22.085 -2.112 16.532 27.668 hybrid contribution 1.369 0.076 -0.295 1.402 sum -20.716 -2.036 16.237 26.399 Atomic orbital electron populations 1.23026 0.77401 1.04364 1.01995 1.87910 1.22891 1.26747 1.95919 1.20852 0.78284 0.86504 1.06029 1.26526 0.96723 1.00314 0.78002 1.70800 1.00621 1.16526 1.30429 1.21480 0.91634 1.14688 0.93577 1.16808 0.86582 0.76618 0.80809 1.90793 1.26217 1.53768 1.75292 1.48361 1.10536 1.69715 1.04223 1.22547 0.84290 1.02226 0.91533 1.23299 0.97736 1.00613 0.96179 1.21614 0.90516 0.95365 0.86698 0.89793 1.44105 1.59174 1.07933 1.20812 1.20478 0.95356 0.84211 0.96723 1.19620 1.06612 1.14482 0.99000 0.90364 1.25889 0.95758 1.00379 1.02818 1.70266 1.15691 1.35758 1.36726 0.85176 0.76271 0.78434 0.79999 1.21102 1.22558 1.18982 1.22601 0.90077 1.00061 0.89913 1.25811 0.85598 0.96681 0.94959 1.84426 1.16811 1.68206 1.37645 0.88634 0.91711 0.92137 0.86865 0.86697 0.90412 0.87860 0.88075 0.91419 0.98259 0.96252 0.95051 0.94257 0.93910 0.93177 0.72453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.43 16 2 O -0.42 -6.20 10.69 -148.98 -1.59 -7.79 16 3 C 0.16 1.82 6.56 71.23 0.47 2.29 16 4 C 0.19 3.82 7.93 88.39 0.70 4.52 16 5 N -0.45 -11.44 8.44 -293.03 -2.47 -13.91 16 6 C -0.09 -2.69 6.81 40.40 0.28 -2.41 16 7 C 0.60 21.88 7.85 86.66 0.68 22.56 16 8 O -0.58 -24.46 17.22 -4.09 -0.07 -24.53 16 9 N -0.60 -21.60 3.33 -815.68 -2.71 -24.31 16 10 C 0.12 3.41 6.14 86.85 0.53 3.94 16 11 C -0.14 -4.45 6.61 32.09 0.21 -4.23 16 12 C 0.17 6.79 3.45 46.28 0.16 6.95 16 13 H 0.08 3.32 7.93 -2.39 -0.02 3.30 16 14 N -0.60 -30.07 2.93 -695.58 -2.04 -32.10 16 15 C 0.18 8.98 7.75 127.77 0.99 9.97 16 16 C -0.27 -14.56 9.59 84.04 0.81 -13.76 16 17 H 0.08 4.06 7.85 -2.91 -0.02 4.04 16 18 C -0.05 -2.99 5.07 84.86 0.43 -2.56 16 19 N -0.94 -56.60 10.82 21.65 0.23 -56.37 16 20 Si 0.97 45.16 29.58 68.60 2.03 47.19 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 24 C 0.10 4.14 6.51 86.73 0.56 4.70 16 25 C 0.04 0.94 11.94 67.32 0.80 1.75 16 26 O -0.19 -3.61 10.73 0.33 0.00 -3.60 16 27 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.11 0.57 8.14 -2.38 -0.02 0.56 16 31 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.10 2.83 6.14 -2.39 -0.01 2.81 16 34 H 0.10 2.80 8.14 -2.39 -0.02 2.79 16 35 H 0.07 2.30 6.15 -2.38 -0.01 2.29 16 36 H 0.00 -0.05 7.25 -2.39 -0.02 -0.07 16 37 H 0.02 1.03 7.42 -2.38 -0.02 1.01 16 38 H 0.03 1.38 6.13 -2.39 -0.01 1.36 16 39 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 40 H 0.04 2.06 7.06 -2.39 -0.02 2.05 16 41 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.26 3.85 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -75.22 349.70 2.29 -72.94 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: 1.03 Total: 7.34 kcal Atomic # 6 Polarization: 27.28 SS G_CDS: 7.87 Total: 35.15 kcal Atomic # 7 Polarization: -119.71 SS G_CDS: -6.99 Total: -126.70 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -1.66 Total: -35.93 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -75.22 2.29 -72.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972637279.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.496 kcal (2) G-P(sol) polarization free energy of solvation -75.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds