Wall clock time and date at job start Fri Apr 10 2020 18:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48501 * 109.47173 * 239.99745 * 3 2 1 5 5 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47132 * 119.99624 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.08999 * 109.47480 * 35.27547 * 10 9 7 12 12 C 1.53008 * 109.47014 * 275.27473 * 10 9 7 13 13 C 1.52996 * 109.47074 * 299.99808 * 12 10 9 14 14 C 1.52996 * 109.47220 * 300.00109 * 13 12 10 15 15 C 1.53001 * 109.47349 * 60.00418 * 14 13 12 16 16 H 1.08991 * 109.47002 * 59.99317 * 15 14 13 17 17 N 1.46491 * 109.47219 * 180.02562 * 15 14 13 18 18 C 1.34778 * 119.99958 * 274.99376 * 17 15 14 19 19 O 1.21283 * 120.00183 * 0.02562 * 18 17 15 20 20 C 1.50702 * 120.00351 * 179.97438 * 18 17 15 21 21 N 1.46498 * 109.47460 * 180.02562 * 20 18 17 22 22 C 1.36600 * 127.11469 * 265.02638 * 21 20 18 23 23 N 1.30339 * 107.27804 * 179.97438 * 22 21 20 24 24 N 1.28533 * 109.99332 * 359.97438 * 23 22 21 25 25 C 1.31030 * 109.85727 * 359.72605 * 24 23 22 26 26 O 1.35546 * 126.44602 * 180.29272 * 25 24 23 27 27 C 1.52999 * 109.47493 * 155.27860 * 10 9 7 28 28 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 30 30 H 1.08995 * 109.47066 * 60.00517 * 12 10 9 31 31 H 1.09005 * 109.46722 * 180.02562 * 12 10 9 32 32 H 1.08997 * 109.46795 * 179.97438 * 13 12 10 33 33 H 1.08996 * 109.47285 * 60.00384 * 13 12 10 34 34 H 1.09005 * 109.47245 * 299.99694 * 14 13 12 35 35 H 1.09006 * 109.46869 * 180.02562 * 14 13 12 36 36 H 0.97000 * 120.00700 * 94.99462 * 17 15 14 37 37 H 1.08997 * 109.47111 * 300.00396 * 20 18 17 38 38 H 1.09004 * 109.46858 * 60.00115 * 20 18 17 39 39 H 1.07998 * 126.36405 * 0.04179 * 22 21 20 40 40 H 0.96698 * 114.00128 * 270.16674 * 26 25 24 41 41 H 1.08991 * 109.47925 * 180.02562 * 27 10 9 42 42 H 1.09009 * 109.46506 * 300.00089 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 1 2.9685 -3.5534 0.5851 12 6 2.4223 -4.0290 -1.4438 13 6 1.1442 -4.1743 -2.2722 14 6 0.2669 -5.2724 -1.6679 15 6 -0.0976 -4.9002 -0.2293 16 1 -0.6424 -3.9563 -0.2252 17 7 -0.9371 -5.9519 0.3495 18 6 -2.2693 -5.9392 0.1457 19 8 -2.7731 -5.0573 -0.5171 20 6 -3.1330 -7.0214 0.7406 21 7 -4.5323 -6.7847 0.3770 22 6 -5.4768 -6.1311 1.1164 23 7 -6.5839 -6.1438 0.4285 24 7 -6.4014 -6.7565 -0.6865 25 6 -5.1592 -7.1646 -0.7721 26 8 -4.6032 -7.8405 -1.8072 27 6 1.1806 -4.7550 0.5991 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3881 -0.0002 30 1 3.0474 -3.2467 -1.8743 31 1 2.9669 -4.9732 -1.4480 32 1 1.4038 -4.4390 -3.2972 33 1 0.5993 -3.2303 -2.2681 34 1 0.8118 -6.2164 -1.6722 35 1 -0.6435 -5.3762 -2.2584 36 1 -0.5343 -6.6576 0.8793 37 1 -2.8171 -7.9910 0.3558 38 1 -3.0325 -7.0110 1.8260 39 1 -5.3328 -5.6856 2.0895 40 1 -4.6695 -8.8021 -1.7299 41 1 1.7256 -5.6988 0.5953 42 1 0.9210 -4.4898 1.6241 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981026272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:50 Heat of formation + Delta-G solvation = 21.298979 kcal Electronic energy + Delta-G solvation = -25947.821392 eV Core-core repulsion = 22158.347762 eV Total energy + Delta-G solvation = -3789.473630 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.21010 -40.09870 -38.20398 -37.89448 -35.07367 -34.62073 -33.13776 -31.00620 -30.11730 -29.93154 -28.41151 -27.71405 -23.72911 -23.05340 -22.62141 -22.00473 -21.85233 -20.68126 -19.24206 -18.79039 -17.72703 -17.39699 -17.04704 -16.21483 -15.87637 -15.63979 -15.30225 -14.70241 -14.66598 -14.41535 -13.86968 -13.80981 -13.63241 -13.18810 -12.95924 -12.65913 -12.37657 -12.12655 -11.83135 -11.82882 -11.46455 -11.09342 -10.93226 -10.84576 -10.77598 -10.45496 -10.30844 -10.24259 -10.16040 -10.00673 -9.60654 -9.54440 -9.36596 -9.05112 -8.84633 -6.97283 -5.75979 -3.05881 1.36602 1.76919 2.36302 2.62092 2.98598 3.43366 3.45829 3.48008 3.49757 4.11335 4.31747 4.42814 4.43493 4.58483 5.00811 5.03378 5.12280 5.38429 5.38644 5.56556 5.60962 5.63991 5.65006 5.75702 5.82035 5.99836 6.01990 6.10945 6.22410 6.24878 6.35614 6.53446 6.54027 6.72495 6.78122 6.95415 7.05295 7.05736 7.34300 7.69043 8.03989 8.41657 8.46660 9.52694 10.09280 10.43146 11.46033 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.017491 B = 0.003368 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.410167 B = 8312.203954 C = 9205.117216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.243 4.243 8 H 0.069 0.931 9 N -0.722 5.722 10 C 0.179 3.821 11 H 0.052 0.948 12 C -0.136 4.136 13 C -0.110 4.110 14 C -0.120 4.120 15 C 0.146 3.854 16 H 0.100 0.900 17 N -0.718 5.718 18 C 0.490 3.510 19 O -0.508 6.508 20 C 0.089 3.911 21 N -0.473 5.473 22 C 0.177 3.823 23 N -0.281 5.281 24 N -0.287 5.287 25 C 0.362 3.638 26 O -0.432 6.432 27 C -0.127 4.127 28 H 0.256 0.744 29 H 0.384 0.616 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.397 0.603 37 H 0.122 0.878 38 H 0.131 0.869 39 H 0.226 0.774 40 H 0.402 0.598 41 H 0.062 0.938 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.166 -22.056 4.023 22.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.087 0.913 9 N -0.364 5.364 10 C 0.068 3.932 11 H 0.070 0.930 12 C -0.176 4.176 13 C -0.148 4.148 14 C -0.158 4.158 15 C 0.043 3.957 16 H 0.118 0.882 17 N -0.370 5.370 18 C 0.273 3.727 19 O -0.382 6.382 20 C -0.039 4.039 21 N -0.176 5.176 22 C -0.110 4.110 23 N -0.121 5.121 24 N -0.137 5.137 25 C 0.057 3.943 26 O -0.231 6.231 27 C -0.166 4.166 28 H 0.066 0.934 29 H 0.219 0.781 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.230 0.770 37 H 0.140 0.860 38 H 0.149 0.851 39 H 0.242 0.758 40 H 0.259 0.741 41 H 0.080 0.920 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.685 -20.532 2.830 21.051 hybrid contribution 1.903 -0.108 0.637 2.009 sum -1.782 -20.640 3.466 21.005 Atomic orbital electron populations 1.69654 1.05070 1.25856 1.57212 1.24739 0.95448 0.97640 1.02885 0.86308 0.78534 0.83775 0.77772 1.21310 1.21724 1.21330 1.19167 0.90914 0.84129 1.43198 0.91258 1.42500 1.05728 0.99620 1.88571 1.20156 0.93969 0.85933 0.93094 0.93028 1.22191 0.96870 0.99516 0.99036 1.21356 0.96715 0.99243 0.97517 1.21835 0.99669 0.98797 0.95515 1.21137 0.91115 0.90963 0.92533 0.88204 1.46083 1.06264 1.30147 1.54466 1.20502 0.83344 0.86938 0.81938 1.90882 1.72994 1.36287 1.37996 1.21733 0.78424 1.00116 1.03589 1.46458 1.10735 1.44436 1.15957 1.26413 0.84742 0.99581 1.00279 1.74222 1.21883 1.16151 0.99862 1.74605 1.10962 1.14757 1.13366 1.22089 0.88022 1.00641 0.83542 1.85011 1.78241 1.23770 1.36069 1.22078 0.95294 0.99667 0.99516 0.93384 0.78101 0.91919 0.93875 0.93188 0.90326 0.92735 0.92366 0.76983 0.85988 0.85130 0.75767 0.74122 0.91977 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.21 13.06 55.49 0.72 -27.48 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.72 -17.21 4.28 -53.42 -0.23 -17.43 16 10 C 0.18 3.26 3.10 -67.93 -0.21 3.05 16 11 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 12 C -0.14 -2.27 5.61 -26.73 -0.15 -2.42 16 13 C -0.11 -1.87 5.77 -26.74 -0.15 -2.02 16 14 C -0.12 -1.76 5.49 -26.73 -0.15 -1.91 16 15 C 0.15 2.16 2.28 -67.93 -0.16 2.00 16 16 H 0.10 1.99 5.94 -51.93 -0.31 1.68 16 17 N -0.72 -7.54 5.08 -53.81 -0.27 -7.81 16 18 C 0.49 5.92 7.86 -10.98 -0.09 5.83 16 19 O -0.51 -9.43 16.09 5.56 0.09 -9.34 16 20 C 0.09 0.59 6.69 -5.19 -0.03 0.56 16 21 N -0.47 -4.91 2.29 -121.04 -0.28 -5.18 16 22 C 0.18 1.93 12.80 -89.07 -1.14 0.79 16 23 N -0.28 -4.13 12.18 29.87 0.36 -3.77 16 24 N -0.29 -4.45 12.22 29.65 0.36 -4.09 16 25 C 0.36 4.59 9.22 -88.77 -0.82 3.77 16 26 O -0.43 -4.38 13.62 -18.33 -0.25 -4.63 16 27 C -0.13 -1.79 5.07 -26.73 -0.14 -1.93 16 28 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.38 9.95 6.06 -40.82 -0.25 9.70 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.65 7.60 -51.93 -0.39 1.25 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.40 2.48 8.60 -40.82 -0.35 2.13 16 37 H 0.12 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.13 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.23 1.45 8.06 -52.49 -0.42 1.02 16 40 H 0.40 1.41 9.06 45.56 0.41 1.83 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 LS Contribution 351.83 15.07 5.30 5.30 Total: -1.00 -39.34 351.83 -7.57 -46.91 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -5.08 Total: 9.63 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -3.28 Total: 0.62 kcal Atomic # 7 Polarization: -66.44 SS G_CDS: 0.67 Total: -65.77 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.16 Total: -13.97 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -39.34 -7.57 -46.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981026272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.204 kcal (2) G-P(sol) polarization free energy of solvation -39.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds