Wall clock time and date at job start Fri Apr 10 2020 18:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48501 * 109.47173 * 239.99745 * 3 2 1 5 5 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47132 * 119.99624 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.08999 * 109.47480 * 35.27547 * 10 9 7 12 12 C 1.53008 * 109.47014 * 275.27473 * 10 9 7 13 13 C 1.52996 * 109.47074 * 299.99808 * 12 10 9 14 14 C 1.52996 * 109.47220 * 300.00109 * 13 12 10 15 15 C 1.53001 * 109.47349 * 60.00418 * 14 13 12 16 16 H 1.08991 * 109.47002 * 59.99317 * 15 14 13 17 17 N 1.46491 * 109.47219 * 180.02562 * 15 14 13 18 18 C 1.34778 * 119.99958 * 274.99376 * 17 15 14 19 19 O 1.21283 * 120.00183 * 0.02562 * 18 17 15 20 20 C 1.50702 * 120.00351 * 179.97438 * 18 17 15 21 21 N 1.46498 * 109.47460 * 180.02562 * 20 18 17 22 22 C 1.36600 * 127.11469 * 265.02638 * 21 20 18 23 23 N 1.30339 * 107.27804 * 179.97438 * 22 21 20 24 24 N 1.28533 * 109.99332 * 359.97438 * 23 22 21 25 25 C 1.31030 * 109.85727 * 359.72605 * 24 23 22 26 26 O 1.35546 * 126.44602 * 180.29272 * 25 24 23 27 27 C 1.52999 * 109.47493 * 155.27860 * 10 9 7 28 28 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 30 30 H 1.08995 * 109.47066 * 60.00517 * 12 10 9 31 31 H 1.09005 * 109.46722 * 180.02562 * 12 10 9 32 32 H 1.08997 * 109.46795 * 179.97438 * 13 12 10 33 33 H 1.08996 * 109.47285 * 60.00384 * 13 12 10 34 34 H 1.09005 * 109.47245 * 299.99694 * 14 13 12 35 35 H 1.09006 * 109.46869 * 180.02562 * 14 13 12 36 36 H 0.97000 * 120.00700 * 94.99462 * 17 15 14 37 37 H 1.08997 * 109.47111 * 300.00396 * 20 18 17 38 38 H 1.09004 * 109.46858 * 60.00115 * 20 18 17 39 39 H 1.07998 * 126.36405 * 0.04179 * 22 21 20 40 40 H 0.96698 * 114.00128 * 270.16674 * 26 25 24 41 41 H 1.08991 * 109.47925 * 180.02562 * 27 10 9 42 42 H 1.09009 * 109.46506 * 300.00089 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 1 2.9685 -3.5534 0.5851 12 6 2.4223 -4.0290 -1.4438 13 6 1.1442 -4.1743 -2.2722 14 6 0.2669 -5.2724 -1.6679 15 6 -0.0976 -4.9002 -0.2293 16 1 -0.6424 -3.9563 -0.2252 17 7 -0.9371 -5.9519 0.3495 18 6 -2.2693 -5.9392 0.1457 19 8 -2.7731 -5.0573 -0.5171 20 6 -3.1330 -7.0214 0.7406 21 7 -4.5323 -6.7847 0.3770 22 6 -5.4768 -6.1311 1.1164 23 7 -6.5839 -6.1438 0.4285 24 7 -6.4014 -6.7565 -0.6865 25 6 -5.1592 -7.1646 -0.7721 26 8 -4.6032 -7.8405 -1.8072 27 6 1.1806 -4.7550 0.5991 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3881 -0.0002 30 1 3.0474 -3.2467 -1.8743 31 1 2.9669 -4.9732 -1.4480 32 1 1.4038 -4.4390 -3.2972 33 1 0.5993 -3.2303 -2.2681 34 1 0.8118 -6.2164 -1.6722 35 1 -0.6435 -5.3762 -2.2584 36 1 -0.5343 -6.6576 0.8793 37 1 -2.8171 -7.9910 0.3558 38 1 -3.0325 -7.0110 1.8260 39 1 -5.3328 -5.6856 2.0895 40 1 -4.6695 -8.8021 -1.7299 41 1 1.7256 -5.6988 0.5953 42 1 0.9210 -4.4898 1.6241 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981026272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:50 Heat of formation + Delta-G solvation = -12.086132 kcal Electronic energy + Delta-G solvation = -25949.269079 eV Core-core repulsion = 22158.347762 eV Total energy + Delta-G solvation = -3790.921317 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.06734 -41.16355 -39.47770 -38.68326 -36.14798 -35.77854 -34.76921 -32.73005 -31.16509 -30.89595 -29.91052 -28.71196 -25.70032 -24.03559 -23.49969 -23.32781 -22.93268 -21.70871 -20.27275 -19.86111 -19.24035 -18.70981 -17.96391 -17.18791 -16.85970 -16.58177 -16.52160 -16.24119 -15.74859 -15.41066 -15.34593 -15.24426 -15.06229 -14.64995 -13.90635 -13.50864 -13.44794 -13.40320 -13.33563 -12.87585 -12.80094 -12.76403 -12.62743 -12.21366 -12.19972 -11.97803 -11.83068 -11.58275 -11.43331 -11.31374 -11.19781 -10.83556 -10.70353 -10.28532 -10.07866 -8.96570 -7.92144 -5.19632 0.55197 1.06301 1.44932 1.47770 1.49018 1.53945 1.72989 2.12166 2.56837 2.76090 3.41389 3.55816 3.60916 3.75374 3.79211 3.91934 4.07329 4.09324 4.17662 4.23233 4.35615 4.44351 4.58298 4.63739 4.68894 4.75515 4.80551 4.91203 4.99895 5.09425 5.19956 5.29594 5.41709 5.43885 5.51648 5.58530 5.62964 5.66399 6.29803 6.44265 6.53702 7.23699 7.35508 7.57134 8.16087 8.35125 9.31135 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.017491 B = 0.003368 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.410167 B = 8312.203954 C = 9205.117216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.080 4.080 3 Si 0.968 3.032 4 H -0.280 1.280 5 H -0.302 1.302 6 H -0.274 1.274 7 C -0.232 4.232 8 H 0.078 0.922 9 N -0.735 5.735 10 C 0.165 3.835 11 H 0.055 0.945 12 C -0.126 4.126 13 C -0.109 4.109 14 C -0.108 4.108 15 C 0.153 3.847 16 H 0.038 0.962 17 N -0.697 5.697 18 C 0.485 3.515 19 O -0.584 6.584 20 C 0.096 3.904 21 N -0.471 5.471 22 C 0.186 3.814 23 N -0.329 5.329 24 N -0.339 5.339 25 C 0.363 3.637 26 O -0.441 6.441 27 C -0.112 4.112 28 H 0.247 0.753 29 H 0.370 0.630 30 H 0.036 0.964 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.022 0.978 34 H 0.097 0.903 35 H 0.035 0.965 36 H 0.424 0.576 37 H 0.168 0.832 38 H 0.182 0.818 39 H 0.265 0.735 40 H 0.429 0.571 41 H 0.114 0.886 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.447 -25.595 5.577 26.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.272 4.272 3 Si 0.797 3.203 4 H -0.207 1.207 5 H -0.229 1.229 6 H -0.200 1.200 7 C -0.364 4.364 8 H 0.096 0.904 9 N -0.376 5.376 10 C 0.057 3.943 11 H 0.073 0.927 12 C -0.166 4.166 13 C -0.147 4.147 14 C -0.146 4.146 15 C 0.048 3.952 16 H 0.056 0.944 17 N -0.350 5.350 18 C 0.270 3.730 19 O -0.463 6.463 20 C -0.029 4.029 21 N -0.174 5.174 22 C -0.102 4.102 23 N -0.168 5.168 24 N -0.189 5.189 25 C 0.056 3.944 26 O -0.244 6.244 27 C -0.151 4.151 28 H 0.055 0.945 29 H 0.202 0.798 30 H 0.055 0.945 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.041 0.959 34 H 0.115 0.885 35 H 0.054 0.946 36 H 0.263 0.737 37 H 0.186 0.814 38 H 0.200 0.800 39 H 0.281 0.719 40 H 0.291 0.709 41 H 0.133 0.867 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.987 -24.190 4.417 24.610 hybrid contribution 1.203 0.892 0.116 1.502 sum 0.215 -23.298 4.533 23.736 Atomic orbital electron populations 1.69847 1.06771 1.25727 1.60188 1.25521 0.96144 1.01063 1.04462 0.85288 0.77136 0.79613 0.78222 1.20660 1.22884 1.20018 1.19625 0.91452 0.85392 1.39970 0.90377 1.42756 1.05328 1.01065 1.88428 1.20533 0.94410 0.84965 0.94428 0.92675 1.22069 0.96409 1.00862 0.97282 1.21297 0.96837 0.97597 0.98971 1.21724 0.98627 0.99516 0.94762 1.20703 0.91305 0.89864 0.93316 0.94377 1.45743 1.05755 1.29548 1.53957 1.21504 0.83804 0.87036 0.80617 1.90876 1.74334 1.39623 1.41486 1.22162 0.75120 0.99367 1.06298 1.46607 1.11957 1.43796 1.15004 1.27223 0.83967 0.97904 1.01066 1.74095 1.24288 1.17885 1.00562 1.74451 1.13320 1.16638 1.14482 1.22153 0.87805 1.00192 0.84207 1.84958 1.77784 1.26095 1.35588 1.21943 0.94431 1.00280 0.98423 0.94475 0.79782 0.94497 0.89285 0.91755 0.95900 0.88471 0.94617 0.73711 0.81422 0.80042 0.71905 0.70926 0.86744 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.01 13.06 21.65 0.28 -61.73 16 2 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 3 Si 0.97 47.01 29.55 68.60 2.03 49.04 16 4 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 6 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 7 C -0.23 -12.74 9.93 84.03 0.83 -11.91 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.73 -35.88 4.28 -322.93 -1.38 -37.26 16 10 C 0.17 5.75 3.10 44.99 0.14 5.89 16 11 H 0.06 1.90 8.08 -2.39 -0.02 1.88 16 12 C -0.13 -3.97 5.61 30.60 0.17 -3.80 16 13 C -0.11 -3.65 5.77 30.59 0.18 -3.47 16 14 C -0.11 -2.98 5.49 30.59 0.17 -2.82 16 15 C 0.15 4.33 2.28 44.99 0.10 4.43 16 16 H 0.04 1.60 5.94 -2.39 -0.01 1.58 16 17 N -0.70 -12.32 5.08 -442.55 -2.25 -14.57 16 18 C 0.48 10.66 7.86 87.66 0.69 11.35 16 19 O -0.58 -22.21 16.09 -3.04 -0.05 -22.26 16 20 C 0.10 0.85 6.69 85.63 0.57 1.42 16 21 N -0.47 -8.76 2.29 -647.65 -1.48 -10.24 16 22 C 0.19 3.83 12.80 179.81 2.30 6.13 16 23 N -0.33 -9.86 12.18 -59.40 -0.72 -10.59 16 24 N -0.34 -10.80 12.22 -173.67 -2.12 -12.92 16 25 C 0.36 8.94 9.22 179.70 1.66 10.60 16 26 O -0.44 -8.35 13.62 -88.52 -1.21 -9.55 16 27 C -0.11 -2.81 5.07 30.60 0.16 -2.65 16 28 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 29 H 0.37 20.22 6.06 -92.71 -0.56 19.65 16 30 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.02 1.00 7.60 -2.39 -0.02 0.98 16 34 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.42 2.85 8.60 -92.71 -0.80 2.05 16 37 H 0.17 0.03 8.14 -2.39 -0.02 0.01 16 38 H 0.18 -0.17 8.14 -2.38 -0.02 -0.19 16 39 H 0.27 2.71 8.06 -2.91 -0.02 2.69 16 40 H 0.43 2.07 9.06 -74.06 -0.67 1.40 16 41 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.06 1.70 8.14 -2.38 -0.02 1.69 16 Total: -1.00 -96.97 351.83 -0.42 -97.39 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: -0.95 Total: 21.73 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 7.43 Total: 10.95 kcal Atomic # 7 Polarization: -139.63 SS G_CDS: -7.67 Total: -147.30 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -1.25 Total: -31.81 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -96.97 -0.42 -97.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981026272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.304 kcal (2) G-P(sol) polarization free energy of solvation -96.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds