Wall clock time and date at job start Fri Apr 10 2020 18:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00088 * 2 1 4 4 H 1.48498 * 109.47024 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47068 * 300.00022 * 3 2 1 6 6 H 1.48501 * 109.46760 * 60.00014 * 3 2 1 7 7 C 1.38819 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99584 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99988 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47021 * 324.99868 * 10 9 7 12 12 C 1.53005 * 109.47414 * 84.99756 * 10 9 7 13 13 C 1.52997 * 109.47452 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46817 * 300.00239 * 13 12 10 15 15 C 1.53000 * 109.47233 * 60.00194 * 14 13 12 16 16 H 1.09002 * 109.47398 * 59.99826 * 15 14 13 17 17 N 1.46500 * 109.47023 * 179.97438 * 15 14 13 18 18 C 1.34779 * 119.99793 * 274.99565 * 17 15 14 19 19 O 1.21279 * 120.00185 * 0.02562 * 18 17 15 20 20 C 1.50702 * 119.99614 * 179.97438 * 18 17 15 21 21 N 1.46500 * 109.46774 * 180.02562 * 20 18 17 22 22 C 1.36609 * 127.11827 * 265.02498 * 21 20 18 23 23 N 1.30328 * 107.27915 * 180.02562 * 22 21 20 24 24 N 1.28538 * 109.99582 * 0.02562 * 23 22 21 25 25 C 1.31028 * 109.85832 * 359.71783 * 24 23 22 26 26 O 1.35541 * 126.45225 * 180.30384 * 25 24 23 27 27 C 1.52997 * 109.47060 * 299.99657 * 15 14 13 28 28 H 0.97001 * 119.99978 * 0.02562 * 1 2 3 29 29 H 0.96994 * 119.99890 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.46812 * 300.00401 * 12 10 9 31 31 H 1.09002 * 109.46935 * 60.00059 * 12 10 9 32 32 H 1.09002 * 109.46695 * 59.99734 * 13 12 10 33 33 H 1.08993 * 109.47194 * 179.97438 * 13 12 10 34 34 H 1.08992 * 109.47063 * 299.99823 * 14 13 12 35 35 H 1.09004 * 109.46733 * 179.97438 * 14 13 12 36 36 H 0.97004 * 120.00223 * 94.99655 * 17 15 14 37 37 H 1.09002 * 109.47423 * 300.00169 * 20 18 17 38 38 H 1.09002 * 109.46795 * 60.00420 * 20 18 17 39 39 H 1.07990 * 126.35942 * 359.96503 * 22 21 20 40 40 H 0.96706 * 113.99427 * 270.16821 * 26 25 24 41 41 H 1.08996 * 109.47853 * 180.02562 * 27 15 14 42 42 H 1.09002 * 109.47153 * 300.00319 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9687 -3.5506 -0.5900 12 6 2.4220 -4.0357 1.4365 13 6 3.1875 -5.3604 1.4364 14 6 2.3107 -6.4560 0.8266 15 6 1.9469 -6.0772 -0.6104 16 1 2.8576 -5.9705 -1.1998 17 7 1.1079 -7.1265 -1.1945 18 6 1.6785 -8.2081 -1.7612 19 8 2.8865 -8.3128 -1.7872 20 6 0.8154 -9.2878 -2.3616 21 7 1.6676 -10.3465 -2.9085 22 6 2.0939 -10.4770 -4.1998 23 7 2.8282 -11.5521 -4.2582 24 7 2.8925 -12.1040 -3.0991 25 6 2.2031 -11.4026 -2.2333 26 8 2.0492 -11.6769 -0.9149 27 6 1.1814 -4.7525 -0.6104 28 1 -0.4850 0.8401 -0.0004 29 1 0.3556 -2.3881 0.0002 30 1 3.0469 -3.2553 1.8708 31 1 1.5113 -4.1419 2.0260 32 1 4.0982 -5.2537 0.8470 33 1 3.4471 -5.6300 2.4601 34 1 1.4001 -6.5626 1.4159 35 1 2.8563 -7.3996 0.8261 36 1 0.1417 -7.0429 -1.1734 37 1 0.1672 -9.7053 -1.5910 38 1 0.2052 -8.8637 -3.1590 39 1 1.8641 -9.8133 -5.0200 40 1 1.2872 -12.2383 -0.7163 41 1 0.9217 -4.4827 -1.6340 42 1 0.2707 -4.8591 -0.0210 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981026274.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:55 Heat of formation + Delta-G solvation = 16.002061 kcal Electronic energy + Delta-G solvation = -25325.858763 eV Core-core repulsion = 21536.155441 eV Total energy + Delta-G solvation = -3789.703322 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.35357 -40.26152 -38.20779 -38.00716 -35.23262 -34.84194 -33.49940 -31.22304 -30.26731 -30.07986 -28.41965 -27.65347 -23.86169 -23.15868 -22.75393 -22.14148 -21.61560 -20.61288 -19.65653 -19.25860 -18.09581 -17.32543 -17.08049 -16.36212 -16.09301 -15.86099 -15.47880 -14.88134 -14.58066 -14.48460 -14.01422 -13.94558 -13.67457 -13.27384 -13.10642 -12.79630 -12.73170 -12.27049 -12.16584 -11.96864 -11.25493 -11.07590 -11.03819 -10.94886 -10.82728 -10.59249 -10.46675 -10.39046 -10.26909 -10.13656 -9.80966 -9.68555 -9.50994 -9.23019 -8.94722 -7.03780 -5.83907 -3.12728 1.22545 1.62130 2.15307 2.47614 2.81191 3.33109 3.38776 3.45338 3.46903 3.97925 4.15498 4.27098 4.32584 4.51389 4.84494 4.88420 4.95388 5.19313 5.24370 5.40481 5.48864 5.50385 5.56902 5.61295 5.75316 5.85524 5.90767 6.03596 6.08390 6.12263 6.20484 6.35581 6.42846 6.49628 6.62661 6.87536 6.92214 7.03056 7.15312 7.65310 7.81976 8.32480 8.34787 9.46318 10.02429 10.37112 11.38820 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.029808 B = 0.002496 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.134080 B =11217.240294 C =11576.583281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.184 3.816 11 H 0.049 0.951 12 C -0.137 4.137 13 C -0.115 4.115 14 C -0.123 4.123 15 C 0.149 3.851 16 H 0.089 0.911 17 N -0.716 5.716 18 C 0.495 3.505 19 O -0.518 6.518 20 C 0.088 3.912 21 N -0.473 5.473 22 C 0.175 3.825 23 N -0.281 5.281 24 N -0.286 5.286 25 C 0.363 3.637 26 O -0.433 6.433 27 C -0.129 4.129 28 H 0.255 0.745 29 H 0.383 0.617 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.401 0.599 37 H 0.124 0.876 38 H 0.133 0.867 39 H 0.226 0.774 40 H 0.404 0.596 41 H 0.069 0.931 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.260 -21.064 -3.158 21.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.089 0.911 9 N -0.364 5.364 10 C 0.073 3.927 11 H 0.067 0.933 12 C -0.178 4.178 13 C -0.154 4.154 14 C -0.162 4.162 15 C 0.045 3.955 16 H 0.107 0.893 17 N -0.367 5.367 18 C 0.277 3.723 19 O -0.393 6.393 20 C -0.040 4.040 21 N -0.176 5.176 22 C -0.111 4.111 23 N -0.121 5.121 24 N -0.137 5.137 25 C 0.058 3.942 26 O -0.232 6.232 27 C -0.168 4.168 28 H 0.064 0.936 29 H 0.217 0.783 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.236 0.764 37 H 0.142 0.858 38 H 0.150 0.850 39 H 0.242 0.758 40 H 0.261 0.739 41 H 0.088 0.912 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.894 -21.767 -3.524 22.132 hybrid contribution -1.732 1.928 0.793 2.711 sum -3.627 -19.839 -2.731 20.352 Atomic orbital electron populations 1.69665 1.05117 1.25586 1.57848 1.24741 0.95525 0.97719 1.02975 0.86133 0.78867 0.84105 0.77205 1.20506 1.21849 1.21858 1.19287 0.91063 0.84009 1.42510 0.91076 1.42395 1.05724 0.99696 1.88628 1.20089 0.94092 0.85514 0.93005 0.93348 1.22300 0.99742 0.95249 1.00461 1.21486 0.98514 0.95309 1.00074 1.21873 1.00192 0.98955 0.95183 1.21109 0.94404 0.85834 0.94120 0.89342 1.46087 1.10718 1.20909 1.58992 1.20507 0.89243 0.83240 0.79276 1.90827 1.14117 1.77363 1.57001 1.21744 0.92352 0.87676 1.02178 1.46475 1.39588 1.21565 1.10020 1.26404 0.98950 0.99857 0.85937 1.74226 1.16261 1.07147 1.14485 1.74622 1.19331 1.23595 0.96123 1.22110 0.97690 0.88060 0.86352 1.85000 1.52481 1.71847 1.13846 1.22095 0.99375 0.93186 1.02095 0.93558 0.78348 0.91795 0.92619 0.92157 0.92378 0.91966 0.92220 0.76449 0.85783 0.84962 0.75782 0.73920 0.91235 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.32 13.06 55.49 0.72 -26.60 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.24 -6.36 9.93 -15.06 -0.15 -6.51 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.72 -17.09 5.12 -53.42 -0.27 -17.36 16 10 C 0.18 3.36 2.77 -67.93 -0.19 3.17 16 11 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 12 C -0.14 -2.29 5.50 -26.73 -0.15 -2.44 16 13 C -0.11 -1.58 5.92 -26.73 -0.16 -1.74 16 14 C -0.12 -1.53 5.49 -26.73 -0.15 -1.68 16 15 C 0.15 1.83 2.45 -67.93 -0.17 1.66 16 16 H 0.09 1.29 7.58 -51.93 -0.39 0.89 16 17 N -0.72 -6.25 5.08 -53.81 -0.27 -6.52 16 18 C 0.49 4.82 7.86 -10.98 -0.09 4.73 16 19 O -0.52 -7.91 16.09 5.56 0.09 -7.82 16 20 C 0.09 0.44 6.69 -5.19 -0.03 0.41 16 21 N -0.47 -4.07 2.29 -121.04 -0.28 -4.34 16 22 C 0.18 1.58 12.80 -89.07 -1.14 0.44 16 23 N -0.28 -3.62 12.18 29.87 0.36 -3.25 16 24 N -0.29 -3.95 12.22 29.65 0.36 -3.59 16 25 C 0.36 3.98 9.22 -88.76 -0.82 3.16 16 26 O -0.43 -3.72 13.62 -18.32 -0.25 -3.97 16 27 C -0.13 -1.81 4.86 -26.73 -0.13 -1.94 16 28 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.38 9.55 7.80 -40.82 -0.32 9.23 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.40 2.20 8.60 -40.82 -0.35 1.85 16 37 H 0.12 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.13 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.23 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.40 0.92 9.06 45.56 0.41 1.34 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 356.27 15.07 5.37 5.37 Total: -1.00 -38.20 356.27 -7.72 -45.92 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -5.27 Total: 6.47 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -3.26 Total: -1.21 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: 0.63 Total: -61.66 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -0.16 Total: -11.79 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -38.20 -7.72 -45.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981026274.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.922 kcal (2) G-P(sol) polarization free energy of solvation -38.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds