Wall clock time and date at job start Fri Apr 10 2020 18:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35726 * 116.99762 * 2 1 4 4 C 1.41854 * 126.78331 * 180.30902 * 3 2 1 5 5 C 1.36671 * 103.81154 * 180.11449 * 4 3 2 6 6 C 1.47540 * 126.88230 * 179.87206 * 5 4 3 7 7 O 1.21585 * 119.99780 * 359.71355 * 6 5 4 8 8 N 1.34778 * 119.99995 * 179.70801 * 6 5 4 9 9 C 1.46497 * 119.99664 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47182 * 35.00355 * 9 8 6 11 11 C 1.52999 * 109.47704 * 275.00456 * 9 8 6 12 12 C 1.53006 * 109.46626 * 300.00272 * 11 9 8 13 13 C 1.52997 * 109.47127 * 299.99539 * 12 11 9 14 14 C 1.53002 * 109.46817 * 60.00361 * 13 12 11 15 15 H 1.08996 * 109.47407 * 60.00219 * 14 13 12 16 16 N 1.46507 * 109.46688 * 179.97438 * 14 13 12 17 17 C 1.36933 * 120.00173 * 274.99450 * 16 14 13 18 18 H 1.08000 * 119.99754 * 0.02562 * 17 16 14 19 19 C 1.38806 * 120.00419 * 180.02562 * 17 16 14 20 20 N 1.31618 * 119.99723 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00263 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47442 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47322 * 120.00159 * 21 19 17 24 24 H 1.48500 * 109.47257 * 240.00174 * 21 19 17 25 25 C 1.52996 * 109.46972 * 299.99733 * 14 13 12 26 26 O 1.34659 * 106.23678 * 359.61031 * 5 4 3 27 27 N 1.20876 * 111.63531 * 0.26398 * 26 5 4 28 28 H 1.09000 * 109.47166 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47124 * 299.99758 * 1 2 3 30 30 H 1.08995 * 109.47790 * 60.00218 * 1 2 3 31 31 H 1.07997 * 128.09970 * 359.97438 * 4 3 2 32 32 H 0.96991 * 119.99867 * 0.02562 * 8 6 5 33 33 H 1.08993 * 109.47839 * 180.02562 * 11 9 8 34 34 H 1.09000 * 109.47160 * 59.99903 * 11 9 8 35 35 H 1.09001 * 109.46801 * 59.99811 * 12 11 9 36 36 H 1.09001 * 109.46998 * 179.97438 * 12 11 9 37 37 H 1.09002 * 109.47153 * 180.02562 * 13 12 11 38 38 H 1.08996 * 109.46952 * 300.00302 * 13 12 11 39 39 H 0.96998 * 120.00008 * 95.00488 * 16 14 13 40 40 H 0.97001 * 120.00197 * 180.02562 * 20 19 17 41 41 H 1.09001 * 109.46993 * 180.02562 * 25 14 13 42 42 H 1.09000 * 109.47380 * 299.99696 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4430 1.4505 -0.0061 5 6 3.5390 2.8138 -0.0006 6 6 4.7784 3.6142 -0.0008 7 8 5.8603 3.0595 -0.0011 8 7 4.7113 4.9603 -0.0008 9 6 5.9419 5.7550 -0.0005 10 1 6.7040 5.2450 -0.5897 11 6 6.4383 5.9261 1.4366 12 6 5.3686 6.6420 2.2638 13 6 5.0879 8.0169 1.6542 14 6 4.5916 7.8459 0.2170 15 1 3.6760 7.2546 0.2168 16 7 4.3223 9.1624 -0.3665 17 6 3.1118 9.7683 -0.1599 18 1 2.3558 9.2758 0.4336 19 6 2.8564 11.0155 -0.7132 20 7 3.7776 11.6155 -1.4368 21 14 1.2054 11.8423 -0.4307 22 1 0.3510 10.9669 0.4114 23 1 1.4136 13.1410 0.2587 24 1 0.5391 12.0765 -1.7370 25 6 5.6613 7.1300 -0.6101 26 8 2.2758 3.2802 -0.0008 27 7 1.4685 2.3805 -0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 4.2442 0.7262 -0.0114 32 1 3.8482 5.4028 -0.0003 33 1 7.3537 6.5177 1.4370 34 1 6.6383 4.9466 1.8710 35 1 4.4530 6.0506 2.2635 36 1 5.7220 6.7635 3.2877 37 1 4.3262 8.5272 2.2437 38 1 6.0036 8.6082 1.6544 39 1 5.0014 9.6049 -0.8993 40 1 3.5993 12.4872 -1.8232 41 1 5.3079 7.0085 -1.6340 42 1 6.5769 7.7213 -0.6099 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981027954.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:59 Heat of formation + Delta-G solvation = -1.134816 kcal Electronic energy + Delta-G solvation = -25657.540147 eV Core-core repulsion = 21834.800963 eV Total energy + Delta-G solvation = -3822.739184 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.22712 -40.23469 -39.18967 -38.08026 -34.63774 -33.50327 -33.26684 -32.02830 -31.17352 -29.64839 -28.01072 -27.89432 -24.55104 -23.70657 -23.56413 -22.13111 -21.34220 -21.00883 -19.40841 -18.87138 -18.20017 -17.21875 -17.13649 -16.36627 -15.93744 -15.87833 -15.45957 -15.13775 -14.87694 -14.43726 -14.23032 -13.83214 -13.78184 -13.50804 -13.08507 -12.59537 -12.53051 -12.24117 -12.13617 -12.00559 -11.81004 -11.67190 -11.02286 -10.91005 -10.82341 -10.50333 -10.39085 -10.22266 -10.16893 -10.12959 -9.78682 -9.64427 -9.56600 -9.12363 -8.89605 -6.99159 -5.79445 -3.08415 0.52608 1.82107 2.32984 2.38616 2.81569 3.21141 3.41769 3.47949 3.49760 3.80784 4.46958 4.54644 4.65674 4.71727 4.78898 4.91393 4.96956 5.01862 5.11225 5.11789 5.37873 5.44514 5.52945 5.64097 5.68813 5.80440 5.91772 6.00554 6.03284 6.14372 6.24422 6.42420 6.48158 6.53830 6.57187 6.67464 6.90858 7.04761 7.24653 7.68319 7.76652 7.89069 8.38940 9.50544 10.07304 10.41594 11.43156 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.013554 B = 0.003492 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.341922 B = 8015.779442 C = 9541.427080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.282 6.282 3 C 0.202 3.798 4 C -0.157 4.157 5 C -0.054 4.054 6 C 0.604 3.396 7 O -0.515 6.515 8 N -0.697 5.697 9 C 0.150 3.850 10 H 0.090 0.910 11 C -0.128 4.128 12 C -0.117 4.117 13 C -0.137 4.137 14 C 0.179 3.821 15 H 0.043 0.957 16 N -0.724 5.724 17 C -0.238 4.238 18 H 0.071 0.929 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.905 3.095 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.135 4.135 26 O 0.122 5.878 27 N -0.387 5.387 28 H 0.107 0.893 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.190 0.810 32 H 0.411 0.589 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.384 0.616 40 H 0.254 0.746 41 H 0.072 0.928 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.101 -20.832 4.093 21.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.188 6.188 3 C 0.005 3.995 4 C -0.180 4.180 5 C -0.121 4.121 6 C 0.386 3.614 7 O -0.391 6.391 8 N -0.349 5.349 9 C 0.046 3.954 10 H 0.108 0.892 11 C -0.167 4.167 12 C -0.156 4.156 13 C -0.178 4.178 14 C 0.069 3.931 15 H 0.061 0.939 16 N -0.364 5.364 17 C -0.370 4.370 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.736 3.264 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.173 4.173 26 O 0.055 5.945 27 N -0.110 5.110 28 H 0.125 0.875 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.207 0.793 32 H 0.249 0.751 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.218 0.782 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.463 -21.041 4.114 21.445 hybrid contribution -0.801 0.502 0.015 0.946 sum -1.265 -20.539 4.129 20.988 Atomic orbital electron populations 1.23114 0.76489 1.04272 1.02616 1.86211 1.22826 1.20363 1.89404 1.21903 0.90645 0.85869 1.01131 1.22156 0.94388 0.94924 1.06486 1.24166 0.87202 0.93872 1.06835 1.16475 0.84950 0.82270 0.77663 1.90868 1.26364 1.71358 1.50514 1.46167 1.11780 1.04816 1.72159 1.21125 0.85459 0.91551 0.97218 0.89175 1.21921 0.99210 1.00721 0.94833 1.21529 0.98275 0.97327 0.98428 1.22294 1.01449 0.94970 0.99052 1.20166 0.94347 0.88004 0.90613 0.93939 1.42415 1.16376 1.16477 1.61169 1.19269 0.91799 0.99482 1.26404 0.91105 1.24732 0.97974 0.97708 1.00478 1.69666 1.33339 1.16372 1.38670 0.86153 0.83571 0.79384 0.77303 1.20532 1.21917 1.21892 1.22152 1.01441 0.93598 1.00141 1.84998 1.11769 1.29563 1.68162 1.74033 1.15861 0.96666 1.24435 0.87485 0.92049 0.92020 0.79288 0.75105 0.90714 0.91892 0.92577 0.92671 0.91978 0.92468 0.78233 0.93563 0.90950 0.90134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.73 101.05 1.08 1.30 16 2 O -0.28 -2.91 10.57 -18.88 -0.20 -3.11 16 3 C 0.20 2.35 8.00 -16.72 -0.13 2.22 16 4 C -0.16 -1.72 10.97 -38.77 -0.43 -2.14 16 5 C -0.05 -0.64 7.29 -36.36 -0.26 -0.91 16 6 C 0.60 7.65 7.78 -12.47 -0.10 7.55 16 7 O -0.51 -7.61 16.57 5.29 0.09 -7.52 16 8 N -0.70 -8.49 4.23 -54.85 -0.23 -8.72 16 9 C 0.15 1.88 2.78 -67.93 -0.19 1.69 16 10 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 11 C -0.13 -1.55 5.60 -26.73 -0.15 -1.70 16 12 C -0.12 -1.53 5.77 -26.73 -0.15 -1.69 16 13 C -0.14 -2.24 5.50 -26.73 -0.15 -2.39 16 14 C 0.18 3.17 2.60 -67.93 -0.18 2.99 16 15 H 0.04 0.76 6.44 -51.93 -0.33 0.42 16 16 N -0.72 -16.99 5.12 -53.43 -0.27 -17.26 16 17 C -0.24 -6.33 9.93 -15.06 -0.15 -6.48 16 18 H 0.07 1.84 7.83 -52.49 -0.41 1.42 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -27.48 13.06 55.49 0.72 -26.76 16 21 Si 0.90 21.96 29.55 -169.99 -5.02 16.94 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 C -0.13 -1.96 5.08 -26.73 -0.14 -2.09 16 26 O 0.12 1.52 11.03 15.51 0.17 1.69 16 27 N -0.39 -4.91 11.50 30.47 0.35 -4.56 16 28 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.19 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.41 4.93 6.69 -40.82 -0.27 4.65 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.72 7.60 -51.93 -0.39 0.33 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.38 9.67 7.80 -40.82 -0.32 9.35 16 40 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 352.20 15.07 5.31 5.31 Total: -1.00 -30.88 352.20 -6.03 -36.91 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -5.91 Total: 9.20 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -1.03 Total: -2.11 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: 0.57 Total: -57.31 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.06 Total: -8.95 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.88 -6.03 -36.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981027954.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.780 kcal (2) G-P(sol) polarization free energy of solvation -30.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds