Wall clock time and date at job start Fri Apr 10 2020 18:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35726 * 116.99762 * 2 1 4 4 C 1.41854 * 126.78331 * 180.30902 * 3 2 1 5 5 C 1.36671 * 103.81154 * 180.11449 * 4 3 2 6 6 C 1.47540 * 126.88230 * 179.87206 * 5 4 3 7 7 O 1.21585 * 119.99780 * 359.71355 * 6 5 4 8 8 N 1.34778 * 119.99995 * 179.70801 * 6 5 4 9 9 C 1.46497 * 119.99664 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47182 * 35.00355 * 9 8 6 11 11 C 1.52999 * 109.47704 * 275.00456 * 9 8 6 12 12 C 1.53006 * 109.46626 * 300.00272 * 11 9 8 13 13 C 1.52997 * 109.47127 * 299.99539 * 12 11 9 14 14 C 1.53002 * 109.46817 * 60.00361 * 13 12 11 15 15 H 1.08996 * 109.47407 * 60.00219 * 14 13 12 16 16 N 1.46507 * 109.46688 * 179.97438 * 14 13 12 17 17 C 1.36933 * 120.00173 * 274.99450 * 16 14 13 18 18 H 1.08000 * 119.99754 * 0.02562 * 17 16 14 19 19 C 1.38806 * 120.00419 * 180.02562 * 17 16 14 20 20 N 1.31618 * 119.99723 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00263 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47442 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47322 * 120.00159 * 21 19 17 24 24 H 1.48500 * 109.47257 * 240.00174 * 21 19 17 25 25 C 1.52996 * 109.46972 * 299.99733 * 14 13 12 26 26 O 1.34659 * 106.23678 * 359.61031 * 5 4 3 27 27 N 1.20876 * 111.63531 * 0.26398 * 26 5 4 28 28 H 1.09000 * 109.47166 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47124 * 299.99758 * 1 2 3 30 30 H 1.08995 * 109.47790 * 60.00218 * 1 2 3 31 31 H 1.07997 * 128.09970 * 359.97438 * 4 3 2 32 32 H 0.96991 * 119.99867 * 0.02562 * 8 6 5 33 33 H 1.08993 * 109.47839 * 180.02562 * 11 9 8 34 34 H 1.09000 * 109.47160 * 59.99903 * 11 9 8 35 35 H 1.09001 * 109.46801 * 59.99811 * 12 11 9 36 36 H 1.09001 * 109.46998 * 179.97438 * 12 11 9 37 37 H 1.09002 * 109.47153 * 180.02562 * 13 12 11 38 38 H 1.08996 * 109.46952 * 300.00302 * 13 12 11 39 39 H 0.96998 * 120.00008 * 95.00488 * 16 14 13 40 40 H 0.97001 * 120.00197 * 180.02562 * 20 19 17 41 41 H 1.09001 * 109.46993 * 180.02562 * 25 14 13 42 42 H 1.09000 * 109.47380 * 299.99696 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4430 1.4505 -0.0061 5 6 3.5390 2.8138 -0.0006 6 6 4.7784 3.6142 -0.0008 7 8 5.8603 3.0595 -0.0011 8 7 4.7113 4.9603 -0.0008 9 6 5.9419 5.7550 -0.0005 10 1 6.7040 5.2450 -0.5897 11 6 6.4383 5.9261 1.4366 12 6 5.3686 6.6420 2.2638 13 6 5.0879 8.0169 1.6542 14 6 4.5916 7.8459 0.2170 15 1 3.6760 7.2546 0.2168 16 7 4.3223 9.1624 -0.3665 17 6 3.1118 9.7683 -0.1599 18 1 2.3558 9.2758 0.4336 19 6 2.8564 11.0155 -0.7132 20 7 3.7776 11.6155 -1.4368 21 14 1.2054 11.8423 -0.4307 22 1 0.3510 10.9669 0.4114 23 1 1.4136 13.1410 0.2587 24 1 0.5391 12.0765 -1.7370 25 6 5.6613 7.1300 -0.6101 26 8 2.2758 3.2802 -0.0008 27 7 1.4685 2.3805 -0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 4.2442 0.7262 -0.0114 32 1 3.8482 5.4028 -0.0003 33 1 7.3537 6.5177 1.4370 34 1 6.6383 4.9466 1.8710 35 1 4.4530 6.0506 2.2635 36 1 5.7220 6.7635 3.2877 37 1 4.3262 8.5272 2.2437 38 1 6.0036 8.6082 1.6544 39 1 5.0014 9.6049 -0.8993 40 1 3.5993 12.4872 -1.8232 41 1 5.3079 7.0085 -1.6340 42 1 6.5769 7.7213 -0.6099 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981027954.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:59 Heat of formation + Delta-G solvation = -23.457505 kcal Electronic energy + Delta-G solvation = -25658.508131 eV Core-core repulsion = 21834.800963 eV Total energy + Delta-G solvation = -3823.707168 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -46.13440 -41.31220 -39.95669 -39.29114 -36.19468 -34.65469 -34.32272 -33.14218 -32.75548 -30.83311 -29.48019 -28.62303 -25.75970 -25.34810 -24.47718 -23.28500 -22.52436 -22.11968 -20.44548 -20.02335 -19.12132 -19.09409 -17.97079 -17.36902 -17.03124 -16.76637 -16.61964 -16.27750 -15.97823 -15.86299 -15.39493 -15.02623 -14.99729 -14.78299 -14.70038 -13.88032 -13.52240 -13.22696 -13.08196 -13.01038 -12.93074 -12.87631 -12.80126 -12.55808 -12.18064 -12.00052 -11.92122 -11.59768 -11.52404 -11.39394 -11.04275 -10.97340 -10.82706 -10.49421 -10.14642 -8.94958 -7.90649 -5.17653 -0.40065 0.93693 1.43960 1.49061 1.49939 1.55542 1.59013 1.83593 2.27435 2.58791 2.95456 3.43325 3.61285 3.64340 3.80123 3.91367 3.95686 3.99497 4.23104 4.27261 4.33472 4.34072 4.39615 4.56712 4.60275 4.63340 4.69813 4.75769 4.86104 4.93198 5.13791 5.21382 5.28605 5.37440 5.43373 5.55578 5.59394 5.69406 5.80332 6.23295 6.32635 6.81145 6.93114 7.38885 8.16297 8.37767 9.33042 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.013554 B = 0.003492 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.341922 B = 8015.779442 C = 9541.427080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.288 6.288 3 C 0.200 3.800 4 C -0.149 4.149 5 C -0.060 4.060 6 C 0.612 3.388 7 O -0.534 6.534 8 N -0.695 5.695 9 C 0.158 3.842 10 H 0.098 0.902 11 C -0.123 4.123 12 C -0.108 4.108 13 C -0.128 4.128 14 C 0.173 3.827 15 H 0.044 0.956 16 N -0.737 5.737 17 C -0.230 4.230 18 H 0.076 0.924 19 C -0.076 4.076 20 N -0.969 5.969 21 Si 0.964 3.036 22 H -0.266 1.266 23 H -0.297 1.297 24 H -0.296 1.296 25 C -0.123 4.123 26 O 0.114 5.886 27 N -0.402 5.402 28 H 0.138 0.862 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.209 0.791 32 H 0.413 0.587 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.038 0.962 38 H 0.050 0.950 39 H 0.373 0.627 40 H 0.249 0.751 41 H 0.065 0.935 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.060 -22.812 4.929 23.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.194 6.194 3 C 0.003 3.997 4 C -0.171 4.171 5 C -0.127 4.127 6 C 0.395 3.605 7 O -0.412 6.412 8 N -0.346 5.346 9 C 0.054 3.946 10 H 0.116 0.884 11 C -0.161 4.161 12 C -0.146 4.146 13 C -0.168 4.168 14 C 0.065 3.935 15 H 0.062 0.938 16 N -0.376 5.376 17 C -0.362 4.362 18 H 0.093 0.907 19 C -0.268 4.268 20 N -0.621 5.621 21 Si 0.795 3.205 22 H -0.191 1.191 23 H -0.224 1.224 24 H -0.224 1.224 25 C -0.161 4.161 26 O 0.048 5.952 27 N -0.127 5.127 28 H 0.156 0.844 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.226 0.774 32 H 0.250 0.750 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.204 0.796 40 H 0.058 0.942 41 H 0.084 0.916 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.635 -23.069 4.984 23.610 hybrid contribution -0.776 1.002 -0.220 1.286 sum -1.410 -22.067 4.765 22.619 Atomic orbital electron populations 1.23384 0.74893 1.06343 1.02448 1.86224 1.24431 1.19632 1.89145 1.22099 0.91037 0.86073 1.00521 1.22437 0.94650 0.94888 1.05149 1.24038 0.86850 0.94120 1.07645 1.16427 0.84875 0.82132 0.77039 1.90861 1.27117 1.71672 1.51573 1.46132 1.11740 1.04813 1.71935 1.21045 0.85717 0.90174 0.97659 0.88358 1.21890 0.99155 1.01090 0.93962 1.21441 0.98962 0.95107 0.99099 1.22112 1.00235 0.96852 0.97648 1.20417 0.95656 0.85737 0.91662 0.93779 1.42629 1.15228 1.18323 1.61405 1.19626 0.92734 0.99247 1.24629 0.90654 1.25456 1.01104 0.98841 1.01444 1.69807 1.35156 1.16564 1.40551 0.85194 0.80237 0.78218 0.76888 1.19083 1.22440 1.22372 1.21993 1.00340 0.94547 0.99264 1.84979 1.11933 1.29687 1.68620 1.74014 1.16237 0.97172 1.25271 0.84364 0.92151 0.92236 0.77448 0.74980 0.89622 0.91151 0.92251 0.91255 0.94302 0.93079 0.79553 0.94240 0.91648 0.89753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.73 113.37 1.22 1.51 16 2 O -0.29 -5.47 10.57 -90.49 -0.96 -6.43 16 3 C 0.20 4.38 8.00 85.78 0.69 5.06 16 4 C -0.15 -3.00 10.97 22.80 0.25 -2.75 16 5 C -0.06 -1.34 7.29 24.36 0.18 -1.17 16 6 C 0.61 14.45 7.78 86.70 0.67 15.12 16 7 O -0.53 -14.72 16.57 -3.99 -0.07 -14.79 16 8 N -0.69 -15.77 4.23 -445.71 -1.88 -17.66 16 9 C 0.16 3.63 2.78 44.99 0.13 3.76 16 10 H 0.10 2.21 7.58 -2.39 -0.02 2.19 16 11 C -0.12 -2.64 5.60 30.60 0.17 -2.47 16 12 C -0.11 -2.58 5.77 30.60 0.18 -2.41 16 13 C -0.13 -4.08 5.50 30.59 0.17 -3.91 16 14 C 0.17 6.04 2.60 44.99 0.12 6.15 16 15 H 0.04 1.53 6.44 -2.39 -0.02 1.51 16 16 N -0.74 -34.78 5.12 -322.94 -1.65 -36.44 16 17 C -0.23 -12.26 9.93 84.03 0.83 -11.43 16 18 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 19 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 20 N -0.97 -58.28 13.06 21.65 0.28 -58.00 16 21 Si 0.96 45.55 29.55 68.60 2.03 47.58 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 24 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 25 C -0.12 -3.43 5.08 30.59 0.16 -3.28 16 26 O 0.11 2.72 11.03 65.67 0.72 3.44 16 27 N -0.40 -9.81 11.50 -172.03 -1.98 -11.79 16 28 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.21 3.27 8.06 -2.91 -0.02 3.24 16 32 H 0.41 9.35 6.69 -92.71 -0.62 8.73 16 33 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.06 1.40 7.60 -2.39 -0.02 1.38 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.37 19.09 7.80 -92.71 -0.72 18.37 16 40 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 41 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -65.70 352.20 1.43 -64.27 By element: Atomic # 1 Polarization: 29.71 SS G_CDS: -0.29 Total: 29.42 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 5.22 Total: 0.38 kcal Atomic # 7 Polarization: -118.65 SS G_CDS: -5.24 Total: -123.89 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.30 Total: -17.77 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -65.70 1.43 -64.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981027954.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.813 kcal (2) G-P(sol) polarization free energy of solvation -65.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds