Wall clock time and date at job start Fri Apr 10 2020 18:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 O 1.20923 * 124.56701 * 2 1 4 4 C 1.34168 * 112.19190 * 179.73121 * 3 2 1 5 5 C 1.48204 * 126.38429 * 180.02562 * 4 3 2 6 6 O 1.21491 * 119.99979 * 180.02562 * 5 4 3 7 7 N 1.34775 * 119.99826 * 0.02562 * 5 4 3 8 8 C 1.46505 * 119.99884 * 180.02562 * 7 5 4 9 9 H 1.08997 * 109.46881 * 35.00118 * 8 7 5 10 10 C 1.53002 * 109.46895 * 274.99844 * 8 7 5 11 11 C 1.52997 * 109.46920 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47207 * 60.00113 * 11 10 8 13 13 C 1.53004 * 109.47360 * 300.00050 * 12 11 10 14 14 H 1.09000 * 109.46557 * 300.00304 * 13 12 11 15 15 N 1.46496 * 109.47319 * 179.97438 * 13 12 11 16 16 C 1.36937 * 119.99640 * 84.99806 * 15 13 12 17 17 H 1.07996 * 120.00484 * 0.02562 * 16 15 13 18 18 C 1.38818 * 119.99768 * 180.02562 * 16 15 13 19 19 N 1.31616 * 119.99898 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99942 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47300 * 89.99633 * 20 18 16 22 22 H 1.48502 * 109.46885 * 209.99901 * 20 18 16 23 23 H 1.48504 * 109.46924 * 329.99351 * 20 18 16 24 24 C 1.53002 * 109.46820 * 155.00020 * 8 7 5 25 25 C 1.36313 * 107.22869 * 359.97438 * 4 3 2 26 26 C 1.34833 * 124.56436 * 179.68966 * 2 1 3 27 27 O 1.21968 * 127.14858 * 0.27109 * 26 2 1 28 28 H 1.09000 * 109.47269 * 0.03243 * 1 2 3 29 29 H 1.09007 * 109.47124 * 120.02634 * 1 2 3 30 30 H 1.09001 * 109.47529 * 240.03125 * 1 2 3 31 31 H 0.97002 * 120.00230 * 0.02562 * 7 5 4 32 32 H 1.08998 * 109.47391 * 300.00362 * 10 8 7 33 33 H 1.09006 * 109.46976 * 60.00378 * 10 8 7 34 34 H 1.08998 * 109.47407 * 180.02562 * 11 10 8 35 35 H 1.09006 * 109.47485 * 300.00130 * 11 10 8 36 36 H 1.08997 * 109.46957 * 60.00222 * 12 11 10 37 37 H 1.09001 * 109.47336 * 179.97438 * 12 11 10 38 38 H 0.96999 * 120.00222 * 264.99981 * 15 13 12 39 39 H 0.97003 * 120.00194 * 179.97438 * 19 18 16 40 40 H 1.08995 * 109.47382 * 299.99700 * 24 8 7 41 41 H 1.08997 * 109.47314 * 60.00363 * 24 8 7 42 42 H 1.08002 * 127.99334 * 179.97438 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1511 0.9958 0.0000 4 6 3.4616 0.7082 0.0058 5 6 4.5760 1.6852 0.0081 6 8 5.7263 1.2945 0.0130 7 7 4.3132 3.0071 0.0046 8 6 5.4148 3.9729 0.0063 9 1 6.2448 3.5783 -0.5797 10 6 5.8765 4.2174 1.4443 11 6 7.0274 5.2255 1.4460 12 6 6.5516 6.5437 0.8320 13 6 6.0899 6.2993 -0.6061 14 1 6.9198 5.9042 -1.1919 15 7 5.6338 7.5613 -1.1937 16 6 6.5373 8.4151 -1.7681 17 1 7.5860 8.1579 -1.7882 18 6 6.1052 9.6112 -2.3245 19 7 4.8271 9.9244 -2.3004 20 14 7.3376 10.7756 -3.1086 21 1 7.4834 10.4454 -4.5490 22 1 6.8569 12.1735 -2.9674 23 1 8.6522 10.6336 -2.4326 24 6 4.9384 5.2910 -0.6075 25 6 3.5769 -0.6500 0.0105 26 6 2.2299 -1.1103 0.0060 27 8 1.8472 -2.2684 0.0077 28 1 -0.3634 1.0277 -0.0006 29 1 -0.3634 -0.5143 -0.8898 30 1 -0.3634 -0.5133 0.8902 31 1 3.3947 3.3191 0.0010 32 1 5.0465 4.6120 2.0303 33 1 6.2159 3.2784 1.8816 34 1 7.3566 5.3994 2.4704 35 1 7.8574 4.8305 0.8601 36 1 5.7217 6.9388 1.4179 37 1 7.3714 7.2621 0.8336 38 1 4.6918 7.7921 -1.1760 39 1 4.5251 10.7604 -2.6889 40 1 4.6095 5.1168 -1.6320 41 1 4.1084 5.6856 -0.0215 42 1 4.4812 -1.2404 0.0153 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981049408.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:01 Heat of formation + Delta-G solvation = 11.583794 kcal Electronic energy + Delta-G solvation = -25269.852374 eV Core-core repulsion = 21447.664710 eV Total energy + Delta-G solvation = -3822.187664 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.44426 -40.29906 -38.46438 -38.16874 -34.98698 -34.67771 -33.47587 -32.57386 -31.21111 -29.89241 -28.31164 -27.74024 -24.49127 -23.83002 -23.62695 -22.10070 -21.31476 -20.54807 -19.66275 -18.92410 -18.74277 -17.63575 -17.02036 -16.59161 -15.74682 -15.38702 -15.26753 -14.93716 -14.47616 -14.20690 -14.14763 -14.01447 -13.90645 -13.73316 -13.61263 -13.34106 -13.24334 -12.82277 -12.28709 -12.19170 -11.15440 -11.05344 -10.94390 -10.89472 -10.81652 -10.48203 -10.47377 -10.35910 -10.31262 -10.21567 -9.86570 -9.71037 -9.29685 -8.93120 -8.88310 -7.02377 -5.82179 -3.11099 0.20513 1.21707 2.25124 2.42605 2.68812 3.05931 3.40356 3.46089 3.47179 4.20197 4.32146 4.52293 4.63602 4.66769 4.71154 4.84243 4.93260 4.96104 5.18004 5.39941 5.45184 5.48017 5.50080 5.54989 5.60454 5.75447 5.84721 5.89942 6.02030 6.07424 6.20969 6.31624 6.43373 6.49524 6.63295 6.88340 6.97586 7.04674 7.27367 7.58903 7.64375 7.66155 8.36413 9.47856 10.04161 10.38659 11.40457 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.023435 B = 0.002609 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.530645 B =10728.938452 C =11397.665036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.453 5.453 3 O -0.003 6.003 4 C 0.034 3.966 5 C 0.601 3.399 6 O -0.495 6.495 7 N -0.703 5.703 8 C 0.146 3.854 9 H 0.095 0.905 10 C -0.126 4.126 11 C -0.114 4.114 12 C -0.138 4.138 13 C 0.184 3.816 14 H 0.050 0.950 15 N -0.724 5.724 16 C -0.238 4.238 17 H 0.071 0.929 18 C -0.013 4.013 19 N -0.933 5.933 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.131 4.131 25 C -0.238 4.238 26 C 0.480 3.520 27 O -0.523 6.523 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.407 0.593 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.383 0.617 39 H 0.255 0.745 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.310 -17.223 7.527 20.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.217 5.217 3 O -0.015 6.015 4 C -0.024 4.024 5 C 0.382 3.618 6 O -0.370 6.370 7 N -0.352 5.352 8 C 0.043 3.957 9 H 0.113 0.887 10 C -0.164 4.164 11 C -0.153 4.153 12 C -0.178 4.178 13 C 0.073 3.927 14 H 0.068 0.932 15 N -0.364 5.364 16 C -0.370 4.370 17 H 0.089 0.911 18 C -0.209 4.209 19 N -0.582 5.582 20 Si 0.737 3.263 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.170 4.170 25 C -0.263 4.263 26 C 0.278 3.722 27 O -0.403 6.403 28 H 0.118 0.882 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.242 0.758 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.217 0.783 39 H 0.065 0.935 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -6.853 -17.790 7.430 20.461 hybrid contribution -0.183 0.967 -0.398 1.062 sum -7.036 -16.823 7.032 19.544 Atomic orbital electron populations 1.22150 0.70520 1.05358 1.04791 1.46100 1.05924 0.99837 1.69804 1.84007 1.15269 1.21096 1.81091 1.23533 0.81607 0.96458 1.00845 1.16711 0.85401 0.81602 0.78074 1.90903 1.18163 1.78501 1.49423 1.46173 1.11729 1.04772 1.72570 1.21259 0.88699 0.88170 0.97598 0.88719 1.21908 0.99232 0.99626 0.95653 1.21486 0.97194 0.95922 1.00722 1.22311 1.01239 0.95650 0.98650 1.20101 0.93694 0.86670 0.92188 0.93216 1.42391 1.07877 1.17676 1.68497 1.19236 0.90164 0.98188 1.29367 0.91103 1.24740 0.96057 0.98355 1.01773 1.69654 1.13001 1.24760 1.50771 0.86204 0.80320 0.80479 0.79284 1.21710 1.21797 1.20723 1.22133 1.00407 0.93358 1.01052 1.23341 0.99709 0.93387 1.09895 1.18341 0.86701 0.85526 0.81599 1.90970 1.79059 1.15872 1.54412 0.88156 0.89117 0.89167 0.75801 0.91744 0.91934 0.92289 0.92009 0.92593 0.91751 0.78314 0.93508 0.91033 0.91436 0.78943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.52 11.18 59.85 0.67 1.19 16 2 N -0.45 -4.02 3.68 -69.77 -0.26 -4.28 16 3 O 0.00 -0.03 10.69 16.84 0.18 0.15 16 4 C 0.03 0.33 7.25 -36.18 -0.26 0.07 16 5 C 0.60 6.65 7.81 -12.17 -0.09 6.56 16 6 O -0.50 -6.96 16.56 5.37 0.09 -6.87 16 7 N -0.70 -6.96 5.07 -54.64 -0.28 -7.23 16 8 C 0.15 1.74 2.45 -67.93 -0.17 1.58 16 9 H 0.09 1.26 7.58 -51.93 -0.39 0.86 16 10 C -0.13 -1.46 5.49 -26.73 -0.15 -1.61 16 11 C -0.11 -1.47 5.92 -26.73 -0.16 -1.63 16 12 C -0.14 -2.23 5.50 -26.73 -0.15 -2.38 16 13 C 0.18 3.30 2.77 -67.90 -0.19 3.11 16 14 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 15 N -0.72 -16.96 5.12 -53.40 -0.27 -17.24 16 16 C -0.24 -6.34 9.93 -15.06 -0.15 -6.49 16 17 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -27.30 13.06 55.49 0.72 -26.57 16 20 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C -0.13 -1.83 4.86 -26.70 -0.13 -1.96 16 25 C -0.24 -2.52 10.94 -38.70 -0.42 -2.95 16 26 C 0.48 5.65 8.02 -14.66 -0.12 5.53 16 27 O -0.52 -7.80 17.92 4.95 0.09 -7.71 16 28 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.41 3.15 8.41 -40.82 -0.34 2.80 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.38 9.53 7.80 -40.82 -0.32 9.21 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.19 1.83 8.06 -52.49 -0.42 1.40 16 LS Contribution 356.24 15.07 5.37 5.37 Total: -1.00 -33.19 356.24 -6.89 -40.08 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -6.09 Total: 6.92 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -1.41 Total: 0.56 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: -0.08 Total: -55.32 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: 0.36 Total: -14.43 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.19 -6.89 -40.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981049408.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.663 kcal (2) G-P(sol) polarization free energy of solvation -33.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds