Wall clock time and date at job start Fri Apr 10 2020 18:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 O 1.20923 * 124.56701 * 2 1 4 4 C 1.34168 * 112.19190 * 179.73121 * 3 2 1 5 5 C 1.48204 * 126.38429 * 180.02562 * 4 3 2 6 6 O 1.21491 * 119.99979 * 180.02562 * 5 4 3 7 7 N 1.34775 * 119.99826 * 0.02562 * 5 4 3 8 8 C 1.46505 * 119.99884 * 180.02562 * 7 5 4 9 9 H 1.08997 * 109.46881 * 35.00118 * 8 7 5 10 10 C 1.53002 * 109.46895 * 274.99844 * 8 7 5 11 11 C 1.52997 * 109.46920 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47207 * 60.00113 * 11 10 8 13 13 C 1.53004 * 109.47360 * 300.00050 * 12 11 10 14 14 H 1.09000 * 109.46557 * 300.00304 * 13 12 11 15 15 N 1.46496 * 109.47319 * 179.97438 * 13 12 11 16 16 C 1.36937 * 119.99640 * 84.99806 * 15 13 12 17 17 H 1.07996 * 120.00484 * 0.02562 * 16 15 13 18 18 C 1.38818 * 119.99768 * 180.02562 * 16 15 13 19 19 N 1.31616 * 119.99898 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99942 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47300 * 89.99633 * 20 18 16 22 22 H 1.48502 * 109.46885 * 209.99901 * 20 18 16 23 23 H 1.48504 * 109.46924 * 329.99351 * 20 18 16 24 24 C 1.53002 * 109.46820 * 155.00020 * 8 7 5 25 25 C 1.36313 * 107.22869 * 359.97438 * 4 3 2 26 26 C 1.34833 * 124.56436 * 179.68966 * 2 1 3 27 27 O 1.21968 * 127.14858 * 0.27109 * 26 2 1 28 28 H 1.09000 * 109.47269 * 0.03243 * 1 2 3 29 29 H 1.09007 * 109.47124 * 120.02634 * 1 2 3 30 30 H 1.09001 * 109.47529 * 240.03125 * 1 2 3 31 31 H 0.97002 * 120.00230 * 0.02562 * 7 5 4 32 32 H 1.08998 * 109.47391 * 300.00362 * 10 8 7 33 33 H 1.09006 * 109.46976 * 60.00378 * 10 8 7 34 34 H 1.08998 * 109.47407 * 180.02562 * 11 10 8 35 35 H 1.09006 * 109.47485 * 300.00130 * 11 10 8 36 36 H 1.08997 * 109.46957 * 60.00222 * 12 11 10 37 37 H 1.09001 * 109.47336 * 179.97438 * 12 11 10 38 38 H 0.96999 * 120.00222 * 264.99981 * 15 13 12 39 39 H 0.97003 * 120.00194 * 179.97438 * 19 18 16 40 40 H 1.08995 * 109.47382 * 299.99700 * 24 8 7 41 41 H 1.08997 * 109.47314 * 60.00363 * 24 8 7 42 42 H 1.08002 * 127.99334 * 179.97438 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1511 0.9958 0.0000 4 6 3.4616 0.7082 0.0058 5 6 4.5760 1.6852 0.0081 6 8 5.7263 1.2945 0.0130 7 7 4.3132 3.0071 0.0046 8 6 5.4148 3.9729 0.0063 9 1 6.2448 3.5783 -0.5797 10 6 5.8765 4.2174 1.4443 11 6 7.0274 5.2255 1.4460 12 6 6.5516 6.5437 0.8320 13 6 6.0899 6.2993 -0.6061 14 1 6.9198 5.9042 -1.1919 15 7 5.6338 7.5613 -1.1937 16 6 6.5373 8.4151 -1.7681 17 1 7.5860 8.1579 -1.7882 18 6 6.1052 9.6112 -2.3245 19 7 4.8271 9.9244 -2.3004 20 14 7.3376 10.7756 -3.1086 21 1 7.4834 10.4454 -4.5490 22 1 6.8569 12.1735 -2.9674 23 1 8.6522 10.6336 -2.4326 24 6 4.9384 5.2910 -0.6075 25 6 3.5769 -0.6500 0.0105 26 6 2.2299 -1.1103 0.0060 27 8 1.8472 -2.2684 0.0077 28 1 -0.3634 1.0277 -0.0006 29 1 -0.3634 -0.5143 -0.8898 30 1 -0.3634 -0.5133 0.8902 31 1 3.3947 3.3191 0.0010 32 1 5.0465 4.6120 2.0303 33 1 6.2159 3.2784 1.8816 34 1 7.3566 5.3994 2.4704 35 1 7.8574 4.8305 0.8601 36 1 5.7217 6.9388 1.4179 37 1 7.3714 7.2621 0.8336 38 1 4.6918 7.7921 -1.1760 39 1 4.5251 10.7604 -2.6889 40 1 4.6095 5.1168 -1.6320 41 1 4.1084 5.6856 -0.0215 42 1 4.4812 -1.2404 0.0153 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981049408.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:01 Heat of formation + Delta-G solvation = -11.712692 kcal Electronic energy + Delta-G solvation = -25270.862585 eV Core-core repulsion = 21447.664710 eV Total energy + Delta-G solvation = -3823.197875 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -46.24662 -41.27507 -39.38266 -39.35853 -36.35406 -35.45576 -34.87123 -33.41334 -32.91501 -30.98048 -29.57722 -28.70211 -25.73313 -25.21113 -24.55064 -23.22905 -22.50213 -21.50815 -20.86118 -19.85711 -19.51220 -19.07348 -18.27547 -17.64762 -16.76813 -16.38198 -16.27714 -16.15390 -15.89934 -15.40701 -15.18336 -15.10050 -14.97836 -14.84719 -14.78203 -14.26788 -14.17832 -13.67691 -13.60051 -13.39397 -12.87896 -12.82692 -12.26804 -12.17460 -12.01945 -11.95427 -11.90383 -11.65456 -11.43471 -11.37329 -11.14604 -11.11565 -10.85497 -10.25118 -9.69376 -8.97118 -7.92303 -5.19337 -0.62750 0.50729 1.36348 1.49150 1.49666 1.55580 1.58052 1.81387 2.21716 2.58243 3.36276 3.41821 3.60835 3.66026 3.85599 3.87323 4.05732 4.24736 4.29319 4.32536 4.34034 4.43018 4.54939 4.61340 4.63219 4.67695 4.69111 4.80226 4.80744 4.96287 5.12171 5.19265 5.26752 5.32148 5.39486 5.53813 5.57072 5.69325 6.12397 6.31188 6.43780 6.77455 6.82164 7.37571 8.14180 8.36713 9.31040 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.023435 B = 0.002609 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.530645 B =10728.938452 C =11397.665036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.444 5.444 3 O 0.016 5.984 4 C 0.041 3.959 5 C 0.609 3.391 6 O -0.525 6.525 7 N -0.690 5.690 8 C 0.157 3.843 9 H 0.084 0.916 10 C -0.119 4.119 11 C -0.107 4.107 12 C -0.129 4.129 13 C 0.176 3.824 14 H 0.039 0.961 15 N -0.736 5.736 16 C -0.234 4.234 17 H 0.073 0.927 18 C -0.075 4.075 19 N -0.968 5.968 20 Si 0.966 3.034 21 H -0.289 1.289 22 H -0.297 1.297 23 H -0.271 1.271 24 C -0.117 4.117 25 C -0.246 4.246 26 C 0.467 3.533 27 O -0.565 6.565 28 H 0.129 0.871 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.420 0.580 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.039 0.961 38 H 0.374 0.626 39 H 0.250 0.750 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.656 -17.656 8.338 20.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.204 5.204 3 O 0.003 5.997 4 C -0.018 4.018 5 C 0.391 3.609 6 O -0.401 6.401 7 N -0.340 5.340 8 C 0.053 3.947 9 H 0.102 0.898 10 C -0.158 4.158 11 C -0.145 4.145 12 C -0.169 4.169 13 C 0.068 3.932 14 H 0.057 0.943 15 N -0.376 5.376 16 C -0.366 4.366 17 H 0.091 0.909 18 C -0.267 4.267 19 N -0.619 5.619 20 Si 0.795 3.205 21 H -0.216 1.216 22 H -0.224 1.224 23 H -0.196 1.196 24 C -0.156 4.156 25 C -0.271 4.271 26 C 0.266 3.734 27 O -0.450 6.450 28 H 0.148 0.852 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.258 0.742 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.206 0.794 39 H 0.059 0.941 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -7.223 -18.232 8.263 21.280 hybrid contribution -0.103 1.092 -0.628 1.264 sum -7.326 -17.140 7.635 20.143 Atomic orbital electron populations 1.22603 0.67964 1.07630 1.05740 1.46397 1.07113 0.99178 1.67708 1.84032 1.14780 1.20742 1.80108 1.23161 0.81855 0.95735 1.01032 1.16649 0.85118 0.81705 0.77432 1.90899 1.19454 1.78988 1.50796 1.45943 1.12008 1.04117 1.71936 1.20988 0.88793 0.87272 0.97693 0.89838 1.21855 0.99113 0.99514 0.95285 1.21412 0.97661 0.94129 1.01328 1.22119 1.00234 0.97073 0.97447 1.20332 0.94881 0.85412 0.92596 0.94255 1.42579 1.07028 1.19143 1.68805 1.19575 0.90753 0.98388 1.27896 0.90921 1.25460 0.97613 1.00210 1.03425 1.69789 1.14586 1.25043 1.52509 0.85250 0.78728 0.78158 0.78327 1.21646 1.22383 1.19630 1.21911 0.99053 0.93351 1.01281 1.23435 0.99715 0.93792 1.10141 1.18485 0.87338 0.85564 0.81965 1.90942 1.79742 1.17392 1.56880 0.85211 0.88339 0.88156 0.74203 0.90428 0.91239 0.90593 0.92018 0.92796 0.94191 0.79401 0.94138 0.91619 0.90311 0.78467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.67 11.18 127.77 1.43 2.10 16 2 N -0.44 -6.96 3.68 -492.73 -1.82 -8.77 16 3 O 0.02 0.23 10.69 70.41 0.75 0.98 16 4 C 0.04 0.74 7.25 24.47 0.18 0.91 16 5 C 0.61 12.19 7.81 86.89 0.68 12.87 16 6 O -0.52 -13.92 16.56 -3.69 -0.06 -13.98 16 7 N -0.69 -11.82 5.07 -445.07 -2.26 -14.08 16 8 C 0.16 3.39 2.45 44.99 0.11 3.50 16 9 H 0.08 2.07 7.58 -2.39 -0.02 2.06 16 10 C -0.12 -2.42 5.49 30.59 0.17 -2.26 16 11 C -0.11 -2.50 5.92 30.59 0.18 -2.32 16 12 C -0.13 -4.02 5.50 30.60 0.17 -3.86 16 13 C 0.18 6.21 2.77 45.01 0.12 6.33 16 14 H 0.04 1.46 8.08 -2.39 -0.02 1.45 16 15 N -0.74 -34.55 5.12 -322.85 -1.65 -36.20 16 16 C -0.23 -12.47 9.93 84.03 0.83 -11.64 16 17 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 18 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 19 N -0.97 -57.34 13.06 21.65 0.28 -57.06 16 20 Si 0.97 45.14 29.55 68.60 2.03 47.17 16 21 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 22 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 C -0.12 -3.09 4.86 30.61 0.15 -2.94 16 25 C -0.25 -4.96 10.94 22.84 0.25 -4.71 16 26 C 0.47 10.60 8.02 85.25 0.68 11.29 16 27 O -0.56 -16.91 17.92 -5.21 -0.09 -17.00 16 28 H 0.13 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.42 5.12 8.41 -92.71 -0.78 4.34 16 32 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.06 1.46 8.14 -2.38 -0.02 1.45 16 36 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.37 18.73 7.80 -92.71 -0.72 18.01 16 39 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 40 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.20 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -72.12 356.24 2.15 -69.96 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: -0.45 Total: 23.40 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 5.42 Total: 5.58 kcal Atomic # 7 Polarization: -110.67 SS G_CDS: -5.44 Total: -116.11 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: 0.60 Total: -30.00 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -72.12 2.15 -69.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981049408.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.252 kcal (2) G-P(sol) polarization free energy of solvation -72.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds