Wall clock time and date at job start Fri Apr 10 2020 18:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 113.99485 * 2 1 4 4 H 1.09003 * 110.64325 * 29.29794 * 3 2 1 5 5 C 1.54328 * 110.71808 * 266.15848 * 3 2 1 6 6 N 1.47022 * 107.26739 * 219.26562 * 5 3 2 7 7 C 1.36938 * 125.64896 * 178.90272 * 6 5 3 8 8 H 1.07994 * 120.00714 * 174.87450 * 7 6 5 9 9 C 1.38817 * 119.99760 * 354.88028 * 7 6 5 10 10 N 1.31621 * 120.00093 * 7.06129 * 9 7 6 11 11 Si 1.86802 * 120.00053 * 187.05912 * 9 7 6 12 12 H 1.48501 * 109.46907 * 94.98523 * 11 9 7 13 13 H 1.48496 * 109.47377 * 214.98668 * 11 9 7 14 14 H 1.48501 * 109.47212 * 334.98993 * 11 9 7 15 15 C 1.47425 * 108.70707 * 358.93998 * 6 5 3 16 16 C 1.54916 * 104.82925 * 24.12744 * 15 6 5 17 17 H 1.08996 * 111.00043 * 81.06714 * 16 15 6 18 18 N 1.46494 * 111.00343 * 204.91598 * 16 15 6 19 19 C 1.34781 * 120.00041 * 267.19869 * 18 16 15 20 20 O 1.21279 * 119.99967 * 359.97438 * 19 18 16 21 21 C 1.50700 * 119.99792 * 180.02562 * 19 18 16 22 22 H 1.09001 * 109.47512 * 59.99600 * 21 19 18 23 23 C 1.53005 * 109.46968 * 299.99497 * 21 19 18 24 24 N 1.46498 * 109.46878 * 179.97438 * 21 19 18 25 25 C 1.34431 * 126.82610 * 84.70811 * 24 21 19 26 26 N 1.30833 * 108.07853 * 179.89280 * 25 24 21 27 27 C 1.33243 * 109.82851 * 0.38134 * 26 25 24 28 28 N 1.30719 * 108.94447 * 359.76177 * 27 26 25 29 29 H 1.09001 * 109.47529 * 60.00335 * 1 2 3 30 30 H 1.09007 * 109.46620 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47567 * 299.99709 * 1 2 3 32 32 H 1.08999 * 109.88173 * 338.67969 * 5 3 2 33 33 H 1.08997 * 109.88019 * 99.69717 * 5 3 2 34 34 H 0.96998 * 120.00290 * 180.02562 * 10 9 7 35 35 H 1.08996 * 110.36845 * 142.96529 * 15 6 5 36 36 H 1.09000 * 110.36879 * 265.29278 * 15 6 5 37 37 H 0.97006 * 120.00035 * 87.19531 * 18 16 15 38 38 H 1.08994 * 109.46854 * 60.00661 * 23 21 19 39 39 H 1.09003 * 109.47106 * 180.02562 * 23 21 19 40 40 H 1.08997 * 109.47579 * 300.00345 * 23 21 19 41 41 H 1.08001 * 125.95739 * 0.04019 * 25 24 21 42 42 H 1.07998 * 125.52138 * 179.79790 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3537 2.0184 0.4992 5 6 2.3205 1.7650 -1.4402 6 7 3.6081 2.4737 -1.4043 7 6 4.2487 3.0202 -2.4842 8 1 5.1527 3.5939 -2.3425 9 6 3.7361 2.8370 -3.7611 10 7 2.5646 2.2593 -3.9234 11 14 4.7088 3.4102 -5.2493 12 1 5.5021 2.2767 -5.7887 13 1 3.7735 3.9008 -6.2931 14 1 5.6243 4.5089 -4.8491 15 6 4.0959 2.4978 -0.0133 16 6 3.4102 1.2875 0.6684 17 1 3.9387 0.3612 0.4431 18 7 3.3040 1.4905 2.1153 19 6 4.2695 1.0269 2.9335 20 8 5.2260 0.4413 2.4719 21 6 4.1600 1.2352 4.4220 22 1 3.2516 0.7581 4.7898 23 6 4.1072 2.7341 4.7246 24 7 5.3246 0.6434 5.0849 25 6 6.5253 1.2190 5.2699 26 7 7.2907 0.3672 5.9027 27 6 6.6194 -0.7610 6.1305 28 7 5.4105 -0.6403 5.6481 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 2.3922 0.8990 -2.0983 33 1 1.5360 2.4345 -1.7929 34 1 2.2065 2.1310 -4.8156 35 1 5.1796 2.3829 0.0108 36 1 3.8010 3.4260 0.4761 37 1 2.5388 1.9586 2.4845 38 1 3.2405 3.1740 4.2315 39 1 4.0284 2.8849 5.8013 40 1 5.0156 3.2113 4.3568 41 1 6.8080 2.2122 4.9535 42 1 7.0105 -1.6333 6.6329 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081559743.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:35 Heat of formation + Delta-G solvation = 26.538404 kcal Electronic energy + Delta-G solvation = -26036.020183 eV Core-core repulsion = 22246.773751 eV Total energy + Delta-G solvation = -3789.246432 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.10721 -41.22030 -39.74008 -37.53994 -36.06651 -35.72353 -33.72379 -32.35228 -31.20684 -30.35502 -28.85336 -27.54762 -26.45820 -25.77679 -23.54904 -22.87301 -22.25742 -22.02903 -21.26023 -19.34561 -18.66022 -18.34286 -17.64238 -17.23941 -16.57190 -16.48122 -16.32342 -15.88834 -15.81732 -15.64629 -15.22494 -15.09276 -14.94758 -14.57963 -14.09147 -13.77018 -13.64227 -13.36091 -13.28407 -13.19260 -12.99897 -12.79977 -12.61600 -12.48103 -12.33329 -12.07074 -11.89142 -11.65982 -11.50993 -11.05467 -10.79172 -10.77321 -10.71750 -10.50972 -10.18454 -8.97467 -7.90538 -5.26765 0.57028 1.19854 1.37805 1.44713 1.47783 1.55628 1.95296 2.04696 2.45092 2.75254 3.27644 3.33584 3.47243 3.50204 3.52330 3.78884 3.83989 3.90452 3.98145 4.08069 4.28003 4.35864 4.42350 4.58187 4.63991 4.64295 4.70646 4.81648 4.87443 4.92822 5.09789 5.25484 5.28977 5.33619 5.44024 5.46779 5.65023 5.80042 6.12332 6.30393 6.38169 7.02841 7.06386 7.09577 7.68847 8.30855 9.19369 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.017541 B = 0.003489 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.884404 B = 8023.854636 C = 9004.544929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.077 3.923 4 H 0.104 0.896 5 C 0.172 3.828 6 N -0.622 5.622 7 C -0.247 4.247 8 H 0.085 0.915 9 C -0.060 4.060 10 N -0.946 5.946 11 Si 0.977 3.023 12 H -0.292 1.292 13 H -0.291 1.291 14 H -0.265 1.265 15 C 0.133 3.867 16 C 0.151 3.849 17 H 0.067 0.933 18 N -0.687 5.687 19 C 0.502 3.498 20 O -0.576 6.576 21 C 0.146 3.854 22 H 0.152 0.848 23 C -0.157 4.157 24 N -0.368 5.368 25 C 0.269 3.731 26 N -0.575 5.575 27 C 0.193 3.807 28 N -0.349 5.349 29 H 0.034 0.966 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.014 0.986 33 H 0.023 0.977 34 H 0.248 0.752 35 H 0.034 0.966 36 H 0.054 0.946 37 H 0.422 0.578 38 H 0.119 0.881 39 H 0.100 0.900 40 H 0.078 0.922 41 H 0.246 0.754 42 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.691 2.143 21.371 21.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.320 6.320 3 C 0.017 3.983 4 H 0.122 0.878 5 C 0.046 3.954 6 N -0.350 5.350 7 C -0.376 4.376 8 H 0.103 0.897 9 C -0.254 4.254 10 N -0.594 5.594 11 Si 0.805 3.195 12 H -0.219 1.219 13 H -0.218 1.218 14 H -0.189 1.189 15 C 0.007 3.993 16 C 0.044 3.956 17 H 0.086 0.914 18 N -0.340 5.340 19 C 0.288 3.712 20 O -0.454 6.454 21 C 0.039 3.961 22 H 0.169 0.831 23 C -0.215 4.215 24 N -0.158 5.158 25 C -0.027 4.027 26 N -0.302 5.302 27 C -0.109 4.109 28 N -0.176 5.176 29 H 0.053 0.947 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.033 0.967 33 H 0.041 0.959 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.261 0.739 38 H 0.137 0.863 39 H 0.119 0.881 40 H 0.097 0.903 41 H 0.262 0.738 42 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -3.232 1.100 20.952 21.228 hybrid contribution -0.032 0.341 -1.578 1.614 sum -3.264 1.441 19.374 19.700 Atomic orbital electron populations 1.22987 0.79218 1.03807 1.00940 1.87903 1.21876 1.27252 1.94949 1.23522 0.93475 0.85254 0.96006 0.87801 1.21321 0.87352 0.94622 0.92117 1.44503 1.21465 1.65893 1.03130 1.19443 1.06350 1.26568 0.85227 0.89738 1.25661 0.98164 1.01392 1.00134 1.70154 1.18390 1.49646 1.21241 0.85092 0.77700 0.77733 0.79016 1.21936 1.21751 1.18920 1.21939 0.96877 0.95680 0.84817 1.21823 0.95707 0.98489 0.79579 0.91436 1.45519 1.24976 1.58348 1.05200 1.21299 0.82293 0.77878 0.89781 1.90794 1.33788 1.42741 1.78049 1.21483 0.88749 0.99033 0.86800 0.83076 1.22303 1.06347 0.87095 1.05768 1.50233 1.12252 1.10698 1.42620 1.26563 0.81579 1.00993 0.93576 1.70574 1.33748 1.03294 1.22621 1.26581 0.87966 0.98211 0.98152 1.77961 1.22875 0.97974 1.18763 0.94674 0.88463 0.91247 0.96727 0.95917 0.94229 0.94786 0.92834 0.73936 0.86280 0.88116 0.90322 0.73792 0.74127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.86 113.37 1.23 1.89 16 2 O -0.40 -13.93 10.44 -148.98 -1.56 -15.48 16 3 C 0.08 2.65 3.06 31.78 0.10 2.75 16 4 H 0.10 2.76 7.71 -2.39 -0.02 2.74 16 5 C 0.17 8.27 5.16 86.73 0.45 8.72 16 6 N -0.62 -31.49 3.39 -691.97 -2.35 -33.84 16 7 C -0.25 -13.79 10.27 84.03 0.86 -12.92 16 8 H 0.08 4.51 7.84 -2.91 -0.02 4.49 16 9 C -0.06 -3.39 5.48 84.86 0.46 -2.93 16 10 N -0.95 -56.31 10.36 21.65 0.22 -56.09 16 11 Si 0.98 45.63 29.56 68.60 2.03 47.66 16 12 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 13 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 14 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 15 C 0.13 5.28 6.93 86.86 0.60 5.88 16 16 C 0.15 5.21 3.15 46.38 0.15 5.36 16 17 H 0.07 2.93 7.54 -2.39 -0.02 2.91 16 18 N -0.69 -15.65 5.09 -435.97 -2.22 -17.87 16 19 C 0.50 12.71 7.22 87.66 0.63 13.35 16 20 O -0.58 -21.72 16.06 -3.03 -0.05 -21.77 16 21 C 0.15 2.31 3.77 44.25 0.17 2.48 16 22 H 0.15 1.79 8.14 -2.39 -0.02 1.77 16 23 C -0.16 -1.01 8.76 71.98 0.63 -0.38 16 24 N -0.37 -8.19 3.04 -335.01 -1.02 -9.21 16 25 C 0.27 5.70 11.76 180.36 2.12 7.82 16 26 N -0.57 -14.45 11.19 -203.99 -2.28 -16.73 16 27 C 0.19 4.59 13.03 180.76 2.36 6.95 16 28 N -0.35 -9.24 12.70 -61.24 -0.78 -10.02 16 29 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.07 1.25 8.11 -2.39 -0.02 1.23 16 32 H 0.01 0.83 7.21 -2.39 -0.02 0.81 16 33 H 0.02 1.18 7.61 -2.39 -0.02 1.17 16 34 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 35 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.42 5.59 7.98 -92.70 -0.74 4.85 16 38 H 0.12 0.21 7.56 -2.39 -0.02 0.19 16 39 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.08 0.54 7.23 -2.39 -0.02 0.52 16 41 H 0.25 3.14 7.33 -2.91 -0.02 3.11 16 42 H 0.24 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -85.47 353.94 2.06 -83.41 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 0.30 Total: 10.98 kcal Atomic # 6 Polarization: 29.20 SS G_CDS: 9.76 Total: 38.95 kcal Atomic # 7 Polarization: -135.33 SS G_CDS: -8.42 Total: -143.75 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -1.60 Total: -37.25 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -85.47 2.06 -83.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081559743.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.949 kcal (2) G-P(sol) polarization free energy of solvation -85.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds