Wall clock time and date at job start Fri Apr 10 2020 18:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.46957 * 2 1 4 4 C 1.34821 * 126.59305 * 125.00026 * 3 2 1 5 5 C 1.36595 * 106.83984 * 179.97438 * 4 3 2 6 6 C 1.47522 * 125.76876 * 179.97438 * 5 4 3 7 7 O 1.21597 * 119.99876 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99990 * 179.97438 * 6 5 4 9 9 C 1.46504 * 120.00113 * 179.97438 * 8 6 5 10 10 H 1.08995 * 110.88565 * 37.43055 * 9 8 6 11 11 C 1.54912 * 111.00388 * 273.54607 * 9 8 6 12 12 N 1.47419 * 104.82985 * 204.87628 * 11 9 8 13 13 C 1.36942 * 125.64839 * 204.08990 * 12 11 9 14 14 H 1.07992 * 119.99706 * 6.65716 * 13 12 11 15 15 C 1.38812 * 119.99928 * 186.65061 * 13 12 11 16 16 N 1.31619 * 119.99814 * 7.38075 * 15 13 12 17 17 Si 1.86804 * 119.99683 * 187.38332 * 15 13 12 18 18 H 1.48500 * 109.46845 * 265.01760 * 17 15 13 19 19 H 1.48500 * 109.46905 * 145.01852 * 17 15 13 20 20 H 1.48502 * 109.47029 * 25.01940 * 17 15 13 21 21 C 1.47026 * 108.70506 * 24.36095 * 12 11 9 22 22 C 1.54336 * 107.26214 * 358.57986 * 21 12 11 23 23 H 1.09004 * 110.51446 * 96.45669 * 22 21 12 24 24 O 1.42898 * 111.00273 * 219.59851 * 22 21 12 25 25 C 1.42890 * 114.00653 * 263.78707 * 24 22 21 26 26 N 1.34397 * 108.45852 * 0.24317 * 5 4 3 27 27 N 1.28765 * 109.52423 * 359.58519 * 26 5 4 28 28 H 1.09003 * 109.47298 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46771 * 299.99547 * 1 2 3 30 30 H 1.08991 * 109.47484 * 59.99797 * 1 2 3 31 31 H 1.09003 * 109.46771 * 240.00453 * 2 1 3 32 32 H 1.09003 * 109.47099 * 120.00394 * 2 1 3 33 33 H 1.08007 * 126.57905 * 359.97438 * 4 3 2 34 34 H 0.97002 * 120.00107 * 359.97438 * 8 6 5 35 35 H 1.09002 * 110.36476 * 86.04181 * 11 9 8 36 36 H 1.08993 * 110.36482 * 323.72127 * 11 9 8 37 37 H 0.96999 * 119.99355 * 179.97438 * 16 15 13 38 38 H 1.08999 * 109.88022 * 118.12904 * 21 12 11 39 39 H 1.08996 * 109.87722 * 239.29473 * 21 12 11 40 40 H 1.09000 * 109.47232 * 59.99781 * 25 24 22 41 41 H 1.08997 * 109.47565 * 179.97438 * 25 24 22 42 42 H 1.09000 * 109.47241 * 300.00534 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8715 1.9320 0.8867 5 6 3.0508 3.2321 0.5082 6 6 3.9075 4.2191 1.1925 7 8 4.5304 3.8982 2.1862 8 7 3.9998 5.4765 0.7161 9 6 4.8501 6.4569 1.3960 10 1 5.7612 5.9888 1.7687 11 6 4.0795 7.1615 2.5403 12 7 4.7607 8.4576 2.7117 13 6 4.7627 9.2132 3.8538 14 1 4.3256 8.8223 4.7606 15 6 5.3268 10.4816 3.8458 16 7 5.7281 11.0162 2.7120 17 14 5.5164 11.4295 5.4442 18 1 4.3526 12.3342 5.6241 19 1 6.7650 12.2320 5.3987 20 1 5.5822 10.4756 6.5805 21 6 5.4321 8.8077 1.4514 22 6 5.1804 7.6506 0.4616 23 1 4.3339 7.8792 -0.1860 24 8 6.3487 7.3772 -0.3145 25 6 6.3596 8.0149 -1.5931 26 7 2.3102 3.4618 -0.5895 27 7 1.6887 2.3843 -0.9224 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 3.3261 1.4397 1.7338 34 1 3.5032 5.7324 -0.0769 35 1 4.1428 6.5755 3.4572 36 1 3.0380 7.3146 2.2581 37 1 6.1219 11.9026 2.7064 38 1 5.0167 9.7343 1.0551 39 1 6.5027 8.9217 1.6211 40 1 6.3071 9.0955 -1.4607 41 1 7.2788 7.7579 -2.1195 42 1 5.5013 7.6781 -2.1745 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082281490.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:44 Heat of formation + Delta-G solvation = 50.664451 kcal Electronic energy + Delta-G solvation = -25486.293470 eV Core-core repulsion = 21698.093222 eV Total energy + Delta-G solvation = -3788.200248 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.35699 -39.47160 -37.99407 -35.84951 -35.72982 -33.99678 -31.80203 -31.58790 -30.50283 -28.70190 -27.13066 -26.05969 -24.99307 -24.48652 -23.25399 -21.99780 -20.67785 -20.44472 -19.83983 -18.25299 -17.06081 -16.51071 -16.37147 -16.26645 -15.53829 -15.05652 -15.02133 -14.67321 -14.42570 -14.31478 -14.18664 -13.77902 -13.30980 -13.18329 -12.85195 -12.69723 -12.43838 -12.22177 -11.98652 -11.82629 -11.55178 -11.37774 -11.14707 -10.98046 -10.77464 -10.72440 -10.61098 -10.17053 -9.98399 -9.88853 -9.74968 -9.44351 -9.05751 -8.70854 -8.55565 -6.83118 -5.69092 -3.05432 0.96207 1.65844 1.77414 3.26869 3.40111 3.43428 3.48857 3.51536 3.94592 4.08720 4.18553 4.31249 4.52591 4.55890 4.62827 4.81737 4.96173 5.01986 5.17007 5.27208 5.46370 5.51458 5.52318 5.64735 5.66675 5.70619 5.78242 5.91507 5.97946 6.10440 6.12116 6.22525 6.57797 6.68258 6.90240 7.26666 7.55632 7.62007 7.77126 7.85286 7.87942 8.24293 8.37608 9.20730 9.81635 10.45390 11.41198 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.020511 B = 0.003056 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.766467 B = 9160.850587 C =10091.202202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.118 3.882 3 N -0.363 5.363 4 C 0.091 3.909 5 C -0.095 4.095 6 C 0.603 3.397 7 O -0.537 6.537 8 N -0.699 5.699 9 C 0.133 3.867 10 H 0.106 0.894 11 C 0.130 3.870 12 N -0.599 5.599 13 C -0.227 4.227 14 H 0.080 0.920 15 C -0.008 4.008 16 N -0.921 5.921 17 Si 0.913 3.087 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.280 1.280 21 C 0.161 3.839 22 C 0.057 3.943 23 H 0.066 0.934 24 O -0.379 6.379 25 C 0.034 3.966 26 N -0.205 5.205 27 N -0.067 5.067 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.205 0.795 34 H 0.404 0.596 35 H 0.052 0.948 36 H 0.024 0.976 37 H 0.253 0.747 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.045 0.955 41 H 0.079 0.921 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.705 -21.139 -9.062 24.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.003 4.003 3 N -0.149 5.149 4 C -0.065 4.065 5 C -0.235 4.235 6 C 0.387 3.613 7 O -0.412 6.412 8 N -0.348 5.348 9 C 0.028 3.972 10 H 0.124 0.876 11 C 0.003 3.997 12 N -0.327 5.327 13 C -0.355 4.355 14 H 0.098 0.902 15 C -0.204 4.204 16 N -0.568 5.568 17 Si 0.744 3.256 18 H -0.217 1.217 19 H -0.216 1.216 20 H -0.205 1.205 21 C 0.035 3.965 22 C -0.002 4.002 23 H 0.084 0.916 24 O -0.297 6.297 25 C -0.063 4.063 26 N -0.079 5.079 27 N -0.047 5.047 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.222 0.778 34 H 0.239 0.761 35 H 0.070 0.930 36 H 0.042 0.958 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.097 0.903 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.837 -20.967 -9.465 24.302 hybrid contribution 0.179 0.441 1.065 1.166 sum -7.658 -20.526 -8.400 23.463 Atomic orbital electron populations 1.22091 0.92746 1.03651 1.04125 1.22026 0.96873 0.76261 1.05095 1.50597 1.31879 1.12330 1.20116 1.23404 0.93047 0.94141 0.95936 1.21578 1.07544 0.95147 0.99189 1.16721 0.80217 0.81272 0.83137 1.90825 1.45876 1.79200 1.25346 1.45732 1.47856 1.10059 1.31166 1.22434 0.94201 0.87474 0.93073 0.87617 1.21830 0.94356 0.87888 0.95645 1.44259 1.58938 1.18790 1.10686 1.19072 1.33517 0.95493 0.87393 0.90186 1.24818 1.01470 0.96851 0.97285 1.69928 1.46952 1.16323 1.23642 0.86075 0.77238 0.79706 0.82604 1.21664 1.21627 1.20543 1.21610 0.98038 0.92629 0.84183 1.23828 0.87157 0.96104 0.93107 0.91631 1.87889 1.41691 1.71559 1.28548 1.22717 1.01156 0.97480 0.84951 1.74642 1.04762 1.18138 1.10331 1.81944 1.20616 0.90256 1.11879 0.89918 0.91622 0.90703 0.88381 0.87665 0.77829 0.76079 0.92970 0.95839 0.93711 0.91606 0.93510 0.93611 0.90285 0.94661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.68 10.12 37.16 0.38 -0.30 16 2 C 0.12 0.49 7.26 -4.04 -0.03 0.46 16 3 N -0.36 -3.25 3.69 -61.06 -0.23 -3.47 16 4 C 0.09 0.92 11.27 -16.83 -0.19 0.73 16 5 C -0.10 -1.29 6.99 -83.55 -0.58 -1.88 16 6 C 0.60 9.86 7.82 -12.48 -0.10 9.77 16 7 O -0.54 -10.16 16.61 5.28 0.09 -10.07 16 8 N -0.70 -11.48 5.23 -52.77 -0.28 -11.76 16 9 C 0.13 2.60 3.04 -65.78 -0.20 2.40 16 10 H 0.11 2.27 7.73 -51.93 -0.40 1.87 16 11 C 0.13 2.87 6.93 -2.53 -0.02 2.86 16 12 N -0.60 -15.72 3.39 -170.07 -0.58 -16.30 16 13 C -0.23 -6.44 10.26 -15.06 -0.15 -6.59 16 14 H 0.08 2.20 7.84 -52.49 -0.41 1.79 16 15 C -0.01 -0.23 5.45 -17.43 -0.09 -0.32 16 16 N -0.92 -27.20 10.48 55.49 0.58 -26.62 16 17 Si 0.91 22.40 29.56 -169.99 -5.02 17.37 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 C 0.16 3.98 5.21 -3.06 -0.02 3.96 16 22 C 0.06 1.12 3.06 -24.89 -0.08 1.04 16 23 H 0.07 1.16 7.68 -51.93 -0.40 0.77 16 24 O -0.38 -7.16 10.44 -35.23 -0.37 -7.53 16 25 C 0.03 0.50 10.85 101.05 1.10 1.59 16 26 N -0.20 -2.85 12.04 32.85 0.40 -2.46 16 27 N -0.07 -0.82 13.65 60.35 0.82 0.01 16 28 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.11 0.16 8.08 -51.93 -0.42 -0.26 16 33 H 0.20 1.42 8.06 -52.48 -0.42 0.99 16 34 H 0.40 5.96 8.20 -40.82 -0.33 5.62 16 35 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.07 1.77 6.99 -51.93 -0.36 1.41 16 39 H 0.05 1.29 7.83 -51.93 -0.41 0.88 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.03 0.45 8.11 -51.93 -0.42 0.03 16 LS Contribution 358.63 15.07 5.40 5.40 Total: -1.00 -35.00 358.63 -5.26 -40.27 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.10 Total: 1.44 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: 0.01 Total: 13.72 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: 0.72 Total: -60.60 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.28 Total: -17.60 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.00 -5.26 -40.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082281490.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.931 kcal (2) G-P(sol) polarization free energy of solvation -35.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds