Wall clock time and date at job start Fri Apr 10 2020 18:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00323 * 2 1 4 4 H 1.48500 * 109.47236 * 269.99979 * 3 2 1 5 5 H 1.48504 * 109.47059 * 30.00449 * 3 2 1 6 6 H 1.48505 * 109.46843 * 149.99921 * 3 2 1 7 7 C 1.38818 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99704 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00152 * 180.02562 * 7 2 1 10 10 C 1.46501 * 119.99916 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.01909 * 33.60311 * 10 9 7 12 12 C 1.54268 * 110.03129 * 272.16089 * 10 9 7 13 13 C 1.54887 * 104.19666 * 264.32803 * 12 10 9 14 14 C 1.54891 * 102.75039 * 322.05733 * 13 12 10 15 15 H 1.09004 * 110.59552 * 279.21264 * 14 13 12 16 16 C 1.52999 * 110.48850 * 156.62263 * 14 13 12 17 17 N 1.46497 * 109.46992 * 70.22458 * 16 14 13 18 18 C 1.34777 * 119.99525 * 179.97438 * 17 16 14 19 19 O 1.21283 * 120.00463 * 0.02562 * 18 17 16 20 20 C 1.50700 * 119.99675 * 179.72583 * 18 17 16 21 21 H 1.09000 * 109.67220 * 300.77230 * 20 18 17 22 22 C 1.53346 * 109.67528 * 180.28052 * 20 18 17 23 23 C 1.52919 * 108.67913 * 172.73601 * 22 20 18 24 24 N 1.45760 * 110.48608 * 50.74768 * 23 22 20 25 25 C 1.33352 * 124.10594 * 340.90295 * 24 23 22 26 26 O 1.21274 * 118.24329 * 182.26474 * 25 24 23 27 27 C 1.50181 * 123.50693 * 2.27384 * 25 24 23 28 28 C 1.53877 * 110.03351 * 154.99602 * 10 9 7 29 29 H 0.97001 * 119.99148 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99972 * 359.97438 * 9 7 2 31 31 H 1.09001 * 110.48421 * 23.00327 * 12 10 9 32 32 H 1.08991 * 110.48587 * 145.64631 * 12 10 9 33 33 H 1.08997 * 110.75850 * 203.74260 * 13 12 10 34 34 H 1.09005 * 110.75840 * 80.37058 * 13 12 10 35 35 H 1.08995 * 109.46838 * 310.22346 * 16 14 13 36 36 H 1.09001 * 109.46617 * 190.22681 * 16 14 13 37 37 H 0.97000 * 120.00580 * 0.02562 * 17 16 14 38 38 H 1.09005 * 109.60071 * 292.49339 * 22 20 18 39 39 H 1.09000 * 109.60533 * 52.97464 * 22 20 18 40 40 H 1.08994 * 109.30111 * 171.06132 * 23 22 20 41 41 H 1.09002 * 109.29686 * 290.44071 * 23 22 20 42 42 H 0.96994 * 117.93956 * 160.92968 * 24 23 22 43 43 H 1.09000 * 109.38044 * 222.25185 * 27 25 24 44 44 H 1.08996 * 109.41357 * 102.51255 * 27 25 24 45 45 H 1.09000 * 110.03023 * 359.97438 * 28 10 9 46 46 H 1.08997 * 110.03548 * 238.56900 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1120 -2.4711 -0.0011 11 1 3.5600 -3.2200 -0.5690 12 6 4.3283 -2.9576 1.4467 13 6 5.7461 -2.4508 1.8100 14 6 6.5277 -2.6443 0.4869 15 1 6.8450 -3.6813 0.3771 16 6 7.7365 -1.7077 0.4371 17 7 8.7397 -2.1532 1.4073 18 6 9.8969 -1.4750 1.5396 19 8 10.1075 -0.4957 0.8558 20 6 10.9263 -1.9296 2.5420 21 1 10.4924 -1.9236 3.5419 22 6 12.1380 -0.9908 2.4996 23 6 13.0839 -1.3600 3.6430 24 7 13.3628 -2.7906 3.6326 25 6 12.6079 -3.6951 3.0078 26 8 12.9159 -4.8642 3.1034 27 6 11.3970 -3.3434 2.1921 28 6 5.5105 -2.2719 -0.6114 29 1 -0.4849 0.8401 0.0004 30 1 3.8646 -0.3623 0.0004 31 1 3.5843 -2.5190 2.1117 32 1 4.2886 -4.0458 1.4934 33 1 6.1799 -3.0548 2.6068 34 1 5.7195 -1.3983 2.0925 35 1 7.4205 -0.6934 0.6809 36 1 8.1672 -1.7233 -0.5641 37 1 8.5715 -2.9366 1.9540 38 1 12.6549 -1.1038 1.5465 39 1 11.8060 0.0406 2.6181 40 1 14.0180 -0.8100 3.5298 41 1 12.6230 -1.0898 4.5932 42 1 14.1465 -3.1044 4.1103 43 1 10.5985 -4.0540 2.4051 44 1 11.6481 -3.3896 1.1325 45 1 5.6440 -1.2313 -0.9072 46 1 5.6375 -2.9248 -1.4749 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086671452.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:19 Heat of formation + Delta-G solvation = -80.815862 kcal Electronic energy + Delta-G solvation = -25478.427814 eV Core-core repulsion = 21788.066495 eV Total energy + Delta-G solvation = -3690.361319 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.08503 -39.74239 -38.35112 -36.72820 -35.11994 -33.81744 -33.22541 -31.03731 -30.17380 -29.19830 -27.73395 -25.95215 -24.43451 -23.18933 -22.81947 -20.84737 -19.95913 -19.69533 -19.35601 -18.00121 -17.55560 -17.22268 -16.80206 -16.31401 -15.83284 -15.43837 -15.22026 -14.80061 -14.69782 -14.34204 -14.15229 -13.91140 -13.88374 -13.26362 -13.10118 -12.74392 -12.41289 -12.37220 -12.22611 -11.89253 -11.65775 -11.59595 -11.39584 -10.95892 -10.82238 -10.68219 -10.62135 -10.49849 -10.39181 -10.37466 -10.01323 -9.83602 -9.60278 -9.58856 -9.25143 -8.91504 -7.25883 -5.77696 -3.12705 2.15753 2.32331 2.77541 2.86875 3.37074 3.40253 3.45214 3.94186 4.07809 4.14997 4.21680 4.58563 4.62566 4.69284 4.72833 4.77285 4.82113 4.94182 4.98275 5.13125 5.22104 5.38011 5.41588 5.45773 5.54097 5.61808 5.62491 5.68191 5.83982 5.93862 5.98154 6.05189 6.19164 6.23808 6.24925 6.28143 6.49601 6.62059 6.77883 6.80106 6.97572 7.23233 7.71627 7.93912 8.00343 8.42117 9.21070 9.93836 10.13656 11.40750 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.025611 B = 0.002522 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.028319 B =11099.905762 C =11718.343875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.090 0.910 9 N -0.745 5.745 10 C 0.179 3.821 11 H 0.058 0.942 12 C -0.146 4.146 13 C -0.115 4.115 14 C -0.105 4.105 15 H 0.078 0.922 16 C 0.125 3.875 17 N -0.723 5.723 18 C 0.516 3.484 19 O -0.536 6.536 20 C -0.113 4.113 21 H 0.107 0.893 22 C -0.118 4.118 23 C 0.109 3.891 24 N -0.721 5.721 25 C 0.524 3.476 26 O -0.555 6.555 27 C -0.127 4.127 28 C -0.124 4.124 29 H 0.259 0.741 30 H 0.360 0.640 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.401 0.599 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.401 0.599 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.069 0.931 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.343 -5.046 7.533 28.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.373 4.373 8 H 0.108 0.892 9 N -0.388 5.388 10 C 0.069 3.931 11 H 0.076 0.924 12 C -0.186 4.186 13 C -0.152 4.152 14 C -0.124 4.124 15 H 0.096 0.904 16 C 0.002 3.998 17 N -0.374 5.374 18 C 0.302 3.698 19 O -0.413 6.413 20 C -0.134 4.134 21 H 0.125 0.875 22 C -0.156 4.156 23 C -0.016 4.016 24 N -0.373 5.373 25 C 0.311 3.689 26 O -0.433 6.433 27 C -0.167 4.167 28 C -0.163 4.163 29 H 0.069 0.931 30 H 0.193 0.807 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.235 0.765 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.236 0.764 43 H 0.126 0.874 44 H 0.125 0.875 45 H 0.087 0.913 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 27.162 -4.904 6.922 28.456 hybrid contribution 0.655 0.889 0.524 1.222 sum 27.817 -4.015 7.446 29.075 Atomic orbital electron populations 1.69704 1.05114 1.25787 1.57630 1.24678 0.95225 0.97193 1.02128 0.86569 0.79203 0.85046 0.77809 1.21089 1.21814 1.20329 1.19094 0.80720 0.94654 1.42803 0.89226 1.42907 1.03945 1.01910 1.90023 1.20772 0.90115 0.89168 0.92998 0.92431 1.23089 0.95923 0.99098 1.00527 1.22527 0.96235 1.01182 0.95282 1.22262 0.93924 0.98752 0.97439 0.90361 1.21552 0.87552 0.98653 0.92077 1.46070 1.17761 1.31836 1.41780 1.20344 0.82403 0.83332 0.83753 1.90735 1.78300 1.26357 1.45877 1.21476 0.95927 0.95709 1.00315 0.87514 1.21733 0.94128 1.00587 0.99163 1.21467 1.00365 0.80409 0.99325 1.45504 1.29803 1.07789 1.54214 1.19977 0.84482 0.85228 0.79222 1.90793 1.71585 1.18523 1.62382 1.21657 0.96803 0.96353 1.01863 1.22492 0.94853 1.01920 0.97001 0.93093 0.80686 0.90686 0.92838 0.92703 0.91564 0.91111 0.91456 0.76501 0.90078 0.88453 0.89885 0.91176 0.76390 0.87406 0.87488 0.91275 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.20 13.97 55.49 0.78 -28.42 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 3 Si 0.88 22.03 27.74 -169.99 -4.71 17.32 16 4 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 7 C -0.24 -6.71 10.44 -15.06 -0.16 -6.87 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 9 N -0.75 -17.02 4.88 -52.34 -0.26 -17.28 16 10 C 0.18 3.23 3.55 -66.81 -0.24 2.99 16 11 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 12 C -0.15 -2.31 6.54 -25.07 -0.16 -2.48 16 13 C -0.11 -1.45 6.19 -24.74 -0.15 -1.60 16 14 C -0.10 -1.17 2.89 -88.96 -0.26 -1.43 16 15 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 16 C 0.12 1.37 4.96 -4.04 -0.02 1.35 16 17 N -0.72 -6.28 5.37 -60.30 -0.32 -6.61 16 18 C 0.52 4.93 7.12 -10.98 -0.08 4.85 16 19 O -0.54 -7.31 15.90 5.55 0.09 -7.22 16 20 C -0.11 -0.69 2.60 -91.56 -0.24 -0.93 16 21 H 0.11 0.50 8.13 -51.93 -0.42 0.08 16 22 C -0.12 -0.65 4.70 -26.59 -0.13 -0.77 16 23 C 0.11 0.38 7.17 -4.48 -0.03 0.35 16 24 N -0.72 -4.00 5.45 -61.39 -0.33 -4.34 16 25 C 0.52 4.35 7.71 -11.87 -0.09 4.26 16 26 O -0.55 -7.01 17.78 5.56 0.10 -6.91 16 27 C -0.13 -0.80 5.22 -28.10 -0.15 -0.95 16 28 C -0.12 -1.75 6.14 -25.61 -0.16 -1.91 16 29 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 30 H 0.36 8.17 5.38 -40.82 -0.22 7.95 16 31 H 0.07 1.41 8.04 -51.93 -0.42 0.99 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.95 7.97 -51.93 -0.41 0.53 16 35 H 0.07 0.92 8.02 -51.93 -0.42 0.50 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.40 2.53 8.22 -40.82 -0.34 2.19 16 38 H 0.08 0.52 8.12 -51.93 -0.42 0.10 16 39 H 0.10 0.58 7.90 -51.93 -0.41 0.17 16 40 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 41 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 42 H 0.40 1.88 8.80 -40.82 -0.36 1.52 16 43 H 0.11 0.57 7.98 -51.93 -0.41 0.16 16 44 H 0.11 0.69 8.09 -51.93 -0.42 0.27 16 45 H 0.07 1.05 7.31 -51.93 -0.38 0.67 16 46 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 367.97 15.07 5.55 5.55 Total: -1.00 -35.68 367.97 -8.67 -44.36 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -7.60 Total: 6.69 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -1.95 Total: -3.13 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: -0.14 Total: -56.64 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: 0.19 Total: -14.13 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.71 Total: 17.32 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.68 -8.67 -44.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086671452.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.459 kcal (2) G-P(sol) polarization free energy of solvation -35.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds