Wall clock time and date at job start Fri Apr 10 2020 18:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00254 * 2 1 4 4 H 1.48504 * 109.47401 * 240.00301 * 3 2 1 5 5 H 1.48502 * 109.46872 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47381 * 120.00140 * 3 2 1 7 7 C 1.38815 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00040 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99787 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99980 * 179.97438 * 9 7 2 11 11 H 1.08998 * 110.67175 * 36.77781 * 10 9 7 12 12 C 1.54894 * 110.75747 * 273.54680 * 10 9 7 13 13 C 1.54258 * 104.19760 * 203.74016 * 12 10 9 14 14 C 1.53877 * 106.59762 * 23.61154 * 13 12 10 15 15 H 1.09004 * 110.02993 * 240.66491 * 14 13 12 16 16 C 1.53006 * 110.03363 * 119.28129 * 14 13 12 17 17 N 1.46504 * 109.46877 * 66.45278 * 16 14 13 18 18 C 1.34773 * 119.99793 * 179.97438 * 17 16 14 19 19 O 1.21283 * 120.00048 * 0.02562 * 18 17 16 20 20 C 1.50700 * 120.00052 * 179.97438 * 18 17 16 21 21 H 1.08997 * 109.60489 * 300.33084 * 20 18 17 22 22 C 1.53345 * 109.60576 * 180.02562 * 20 18 17 23 23 C 1.53066 * 108.42615 * 172.54955 * 22 20 18 24 24 C 1.50176 * 109.89239 * 48.90080 * 23 22 20 25 25 O 1.21284 * 118.24680 * 162.13110 * 24 23 22 26 26 N 1.33359 * 123.50823 * 342.41681 * 24 23 22 27 27 C 1.45756 * 124.10424 * 2.22394 * 26 24 23 28 28 C 1.54263 * 106.59896 * 359.97438 * 14 13 12 29 29 H 0.96999 * 120.00395 * 359.97438 * 1 2 3 30 30 H 0.96993 * 120.00345 * 0.02562 * 9 7 2 31 31 H 1.09003 * 110.48564 * 85.06413 * 12 10 9 32 32 H 1.09003 * 110.48522 * 322.42410 * 12 10 9 33 33 H 1.09000 * 110.03736 * 264.32458 * 13 12 10 34 34 H 1.08998 * 110.07397 * 142.91240 * 13 12 10 35 35 H 1.08995 * 109.46909 * 306.45560 * 16 14 13 36 36 H 1.08995 * 109.46884 * 186.45258 * 16 14 13 37 37 H 0.96997 * 119.99944 * 0.02562 * 17 16 14 38 38 H 1.08999 * 109.67005 * 52.81536 * 22 20 18 39 39 H 1.08994 * 109.70435 * 292.30182 * 22 20 18 40 40 H 1.08996 * 109.40478 * 288.77469 * 23 22 20 41 41 H 1.08999 * 109.33550 * 168.98595 * 23 22 20 42 42 H 0.96995 * 117.94863 * 182.19920 * 26 24 23 43 43 H 1.09000 * 109.29445 * 220.61024 * 27 26 24 44 44 H 1.09003 * 109.13000 * 101.13068 * 27 26 24 45 45 H 1.09005 * 110.48630 * 95.06951 * 28 14 13 46 46 H 1.08995 * 110.48747 * 217.70993 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9578 -3.5816 0.6111 12 6 2.4101 -4.0874 -1.4451 13 6 2.5897 -5.6166 -1.3512 14 6 1.7898 -6.0784 -0.1204 15 1 2.4561 -6.5483 0.6030 16 6 0.6982 -7.0633 -0.5440 17 7 1.3175 -8.2940 -1.0423 18 6 0.5447 -9.3105 -1.4734 19 8 -0.6634 -9.2063 -1.4492 20 6 1.1817 -10.5762 -1.9865 21 1 1.8183 -10.3450 -2.8405 22 6 0.0902 -11.5657 -2.4118 23 6 0.7597 -12.7589 -3.0982 24 6 1.8969 -13.2610 -2.2557 25 8 2.3212 -14.3767 -2.4703 26 7 2.4617 -12.5477 -1.2807 27 6 2.0200 -11.2177 -0.8800 28 6 1.1527 -4.8136 0.4910 29 1 -0.4851 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0002 31 1 3.3367 -3.6137 -1.7693 32 1 1.5955 -3.8400 -2.1259 33 1 3.6442 -5.8617 -1.2247 34 1 2.2007 -6.0949 -2.2501 35 1 0.0920 -6.6168 -1.3321 36 1 0.0662 -7.2958 0.3131 37 1 2.2837 -8.3774 -1.0612 38 1 -0.5951 -11.0798 -3.1064 39 1 -0.4582 -11.9076 -1.5341 40 1 1.1394 -12.4501 -4.0721 41 1 0.0281 -13.5559 -3.2310 42 1 3.2132 -12.9386 -0.8083 43 1 2.8912 -10.5938 -0.6803 44 1 1.4195 -11.2986 0.0261 45 1 0.1350 -4.6830 0.1230 46 1 1.1613 -4.8701 1.5795 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086740896.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:31 Heat of formation + Delta-G solvation = -85.723955 kcal Electronic energy + Delta-G solvation = -25167.997712 eV Core-core repulsion = 21477.423562 eV Total energy + Delta-G solvation = -3690.574150 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.07414 -39.80019 -38.27593 -36.63987 -35.10018 -33.49302 -33.44232 -31.15425 -30.35211 -28.94132 -27.29900 -25.32593 -24.66721 -23.33766 -23.05520 -21.07668 -19.98560 -19.55532 -19.36163 -18.12600 -17.18951 -16.99879 -16.62118 -16.25398 -15.93365 -15.46622 -15.22547 -14.94845 -14.62073 -14.24257 -14.17115 -13.91285 -13.75673 -13.31792 -12.93113 -12.82202 -12.37826 -12.35991 -12.17716 -11.91969 -11.74510 -11.52736 -11.18446 -10.93293 -10.81024 -10.65975 -10.61263 -10.35298 -10.22046 -10.20555 -10.14272 -9.86138 -9.68280 -9.63007 -9.28044 -8.89846 -6.97254 -5.78855 -3.07709 2.18459 2.26242 2.72028 2.90014 3.41797 3.46360 3.47462 3.96595 4.06581 4.12014 4.23025 4.55981 4.65030 4.70470 4.78138 4.79834 4.85060 4.90016 4.99447 5.11693 5.31468 5.45815 5.47720 5.49547 5.62155 5.65426 5.67254 5.82760 5.90194 5.94720 5.98257 6.13428 6.25039 6.26539 6.27769 6.40072 6.51704 6.65652 6.79036 6.82210 7.07270 7.19903 7.67560 7.73478 7.90795 8.40031 9.50795 10.09399 10.43310 11.43669 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.042434 B = 0.002052 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.685942 B =13638.960815 C =13904.843606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.721 5.721 10 C 0.177 3.823 11 H 0.052 0.948 12 C -0.144 4.144 13 C -0.120 4.120 14 C -0.100 4.100 15 H 0.074 0.926 16 C 0.125 3.875 17 N -0.724 5.724 18 C 0.519 3.481 19 O -0.531 6.531 20 C -0.127 4.127 21 H 0.108 0.892 22 C -0.105 4.105 23 C -0.136 4.136 24 C 0.519 3.481 25 O -0.557 6.557 26 N -0.719 5.719 27 C 0.120 3.880 28 C -0.122 4.122 29 H 0.256 0.744 30 H 0.384 0.616 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.400 0.600 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.402 0.598 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.775 -24.157 -2.891 24.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.087 0.913 9 N -0.361 5.361 10 C 0.066 3.934 11 H 0.070 0.930 12 C -0.185 4.185 13 C -0.159 4.159 14 C -0.120 4.120 15 H 0.092 0.908 16 C 0.002 3.998 17 N -0.376 5.376 18 C 0.304 3.696 19 O -0.407 6.407 20 C -0.148 4.148 21 H 0.127 0.873 22 C -0.143 4.143 23 C -0.176 4.176 24 C 0.307 3.693 25 O -0.436 6.436 26 N -0.372 5.372 27 C -0.005 4.005 28 C -0.161 4.161 29 H 0.066 0.934 30 H 0.218 0.782 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.234 0.766 38 H 0.109 0.891 39 H 0.097 0.903 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.238 0.762 43 H 0.103 0.897 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.008 -24.370 -3.083 24.889 hybrid contribution 1.003 0.982 0.141 1.411 sum 5.011 -23.388 -2.942 24.099 Atomic orbital electron populations 1.69645 1.05101 1.25810 1.57531 1.24754 0.95522 0.97725 1.02992 0.86275 0.78527 0.83594 0.77820 1.21299 1.21700 1.21277 1.19192 0.90948 0.84163 1.42855 0.91268 1.42378 1.05748 0.99767 1.88217 1.21149 0.93867 0.85611 0.92736 0.92967 1.23077 1.01329 0.92649 1.01425 1.22213 0.98910 0.98025 0.96716 1.21964 0.96366 0.95740 0.97909 0.90804 1.21611 0.95685 0.83141 0.99370 1.46118 1.10225 1.16242 1.64998 1.20170 0.87398 0.84311 0.77755 1.90752 1.14088 1.81640 1.54200 1.21669 0.99056 0.94175 0.99944 0.87349 1.21508 0.96729 0.93787 1.02245 1.21701 0.96529 0.99861 0.99484 1.20286 0.83993 0.84846 0.80212 1.90780 1.63862 1.19882 1.69046 1.45418 1.36330 1.18166 1.37236 1.21306 0.99024 0.83390 0.96762 1.22566 1.00157 0.93456 0.99881 0.93433 0.78188 0.92604 0.91803 0.92449 0.92410 0.90971 0.91351 0.76582 0.89132 0.90263 0.87879 0.87537 0.76162 0.89724 0.90736 0.91160 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.86 13.06 55.49 0.72 -27.14 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.24 -6.53 9.98 -15.06 -0.15 -6.68 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.72 -17.53 5.25 -51.51 -0.27 -17.80 16 10 C 0.18 3.28 3.54 -65.95 -0.23 3.05 16 11 H 0.05 0.99 8.12 -51.93 -0.42 0.57 16 12 C -0.14 -2.36 6.51 -25.07 -0.16 -2.52 16 13 C -0.12 -1.39 6.13 -25.62 -0.16 -1.55 16 14 C -0.10 -1.09 2.98 -89.50 -0.27 -1.35 16 15 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 16 C 0.12 1.30 4.71 -4.04 -0.02 1.28 16 17 N -0.72 -5.58 5.21 -60.29 -0.31 -5.89 16 18 C 0.52 4.58 7.14 -10.99 -0.08 4.50 16 19 O -0.53 -7.03 15.89 5.56 0.09 -6.94 16 20 C -0.13 -0.70 2.59 -91.63 -0.24 -0.94 16 21 H 0.11 0.46 8.12 -51.93 -0.42 0.03 16 22 C -0.10 -0.65 4.71 -26.52 -0.12 -0.78 16 23 C -0.14 -0.81 6.03 -28.10 -0.17 -0.98 16 24 C 0.52 4.32 7.71 -11.87 -0.09 4.23 16 25 O -0.56 -7.05 17.78 5.55 0.10 -6.95 16 26 N -0.72 -4.10 5.45 -61.38 -0.33 -4.43 16 27 C 0.12 0.50 6.34 -4.48 -0.03 0.47 16 28 C -0.12 -1.79 5.96 -25.09 -0.15 -1.94 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.38 9.97 7.72 -40.82 -0.32 9.66 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.63 7.58 -51.93 -0.39 0.23 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.40 2.01 7.99 -40.82 -0.33 1.68 16 38 H 0.09 0.62 7.89 -51.93 -0.41 0.21 16 39 H 0.08 0.55 8.13 -51.93 -0.42 0.13 16 40 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.40 1.95 8.80 -40.82 -0.36 1.59 16 43 H 0.08 0.17 7.88 -51.93 -0.41 -0.24 16 44 H 0.07 0.34 8.11 -51.93 -0.42 -0.09 16 45 H 0.07 1.10 7.73 -51.93 -0.40 0.70 16 46 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 370.85 15.07 5.59 5.59 Total: -1.00 -34.62 370.85 -9.06 -43.68 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -7.65 Total: 6.53 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -1.97 Total: -3.70 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -0.19 Total: -55.26 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.19 Total: -13.89 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.62 -9.06 -43.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086740896.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.047 kcal (2) G-P(sol) polarization free energy of solvation -34.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds