Wall clock time and date at job start Fri Apr 10 2020 18:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00254 * 2 1 4 4 H 1.48504 * 109.47401 * 240.00301 * 3 2 1 5 5 H 1.48502 * 109.46872 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47381 * 120.00140 * 3 2 1 7 7 C 1.38815 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00040 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99787 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99980 * 179.97438 * 9 7 2 11 11 H 1.08998 * 110.67175 * 36.77781 * 10 9 7 12 12 C 1.54894 * 110.75747 * 273.54680 * 10 9 7 13 13 C 1.54258 * 104.19760 * 203.74016 * 12 10 9 14 14 C 1.53877 * 106.59762 * 23.61154 * 13 12 10 15 15 H 1.09004 * 110.02993 * 240.66491 * 14 13 12 16 16 C 1.53006 * 110.03363 * 119.28129 * 14 13 12 17 17 N 1.46504 * 109.46877 * 66.45278 * 16 14 13 18 18 C 1.34773 * 119.99793 * 179.97438 * 17 16 14 19 19 O 1.21283 * 120.00048 * 0.02562 * 18 17 16 20 20 C 1.50700 * 120.00052 * 179.97438 * 18 17 16 21 21 H 1.08997 * 109.60489 * 300.33084 * 20 18 17 22 22 C 1.53345 * 109.60576 * 180.02562 * 20 18 17 23 23 C 1.53066 * 108.42615 * 172.54955 * 22 20 18 24 24 C 1.50176 * 109.89239 * 48.90080 * 23 22 20 25 25 O 1.21284 * 118.24680 * 162.13110 * 24 23 22 26 26 N 1.33359 * 123.50823 * 342.41681 * 24 23 22 27 27 C 1.45756 * 124.10424 * 2.22394 * 26 24 23 28 28 C 1.54263 * 106.59896 * 359.97438 * 14 13 12 29 29 H 0.96999 * 120.00395 * 359.97438 * 1 2 3 30 30 H 0.96993 * 120.00345 * 0.02562 * 9 7 2 31 31 H 1.09003 * 110.48564 * 85.06413 * 12 10 9 32 32 H 1.09003 * 110.48522 * 322.42410 * 12 10 9 33 33 H 1.09000 * 110.03736 * 264.32458 * 13 12 10 34 34 H 1.08998 * 110.07397 * 142.91240 * 13 12 10 35 35 H 1.08995 * 109.46909 * 306.45560 * 16 14 13 36 36 H 1.08995 * 109.46884 * 186.45258 * 16 14 13 37 37 H 0.96997 * 119.99944 * 0.02562 * 17 16 14 38 38 H 1.08999 * 109.67005 * 52.81536 * 22 20 18 39 39 H 1.08994 * 109.70435 * 292.30182 * 22 20 18 40 40 H 1.08996 * 109.40478 * 288.77469 * 23 22 20 41 41 H 1.08999 * 109.33550 * 168.98595 * 23 22 20 42 42 H 0.96995 * 117.94863 * 182.19920 * 26 24 23 43 43 H 1.09000 * 109.29445 * 220.61024 * 27 26 24 44 44 H 1.09003 * 109.13000 * 101.13068 * 27 26 24 45 45 H 1.09005 * 110.48630 * 95.06951 * 28 14 13 46 46 H 1.08995 * 110.48747 * 217.70993 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9578 -3.5816 0.6111 12 6 2.4101 -4.0874 -1.4451 13 6 2.5897 -5.6166 -1.3512 14 6 1.7898 -6.0784 -0.1204 15 1 2.4561 -6.5483 0.6030 16 6 0.6982 -7.0633 -0.5440 17 7 1.3175 -8.2940 -1.0423 18 6 0.5447 -9.3105 -1.4734 19 8 -0.6634 -9.2063 -1.4492 20 6 1.1817 -10.5762 -1.9865 21 1 1.8183 -10.3450 -2.8405 22 6 0.0902 -11.5657 -2.4118 23 6 0.7597 -12.7589 -3.0982 24 6 1.8969 -13.2610 -2.2557 25 8 2.3212 -14.3767 -2.4703 26 7 2.4617 -12.5477 -1.2807 27 6 2.0200 -11.2177 -0.8800 28 6 1.1527 -4.8136 0.4910 29 1 -0.4851 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0002 31 1 3.3367 -3.6137 -1.7693 32 1 1.5955 -3.8400 -2.1259 33 1 3.6442 -5.8617 -1.2247 34 1 2.2007 -6.0949 -2.2501 35 1 0.0920 -6.6168 -1.3321 36 1 0.0662 -7.2958 0.3131 37 1 2.2837 -8.3774 -1.0612 38 1 -0.5951 -11.0798 -3.1064 39 1 -0.4582 -11.9076 -1.5341 40 1 1.1394 -12.4501 -4.0721 41 1 0.0281 -13.5559 -3.2310 42 1 3.2132 -12.9386 -0.8083 43 1 2.8912 -10.5938 -0.6803 44 1 1.4195 -11.2986 0.0261 45 1 0.1350 -4.6830 0.1230 46 1 1.1613 -4.8701 1.5795 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086740896.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:31 Heat of formation + Delta-G solvation = -112.183917 kcal Electronic energy + Delta-G solvation = -25169.145102 eV Core-core repulsion = 21477.423562 eV Total energy + Delta-G solvation = -3691.721540 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.68192 -40.55386 -39.41725 -37.30068 -36.32109 -34.98252 -33.97943 -32.64098 -31.31684 -29.99045 -28.69372 -26.07078 -25.59732 -24.85402 -23.89580 -21.84120 -21.12128 -20.63367 -20.06104 -19.14159 -18.68997 -17.67674 -17.31828 -17.10104 -16.70564 -16.59059 -16.23186 -16.01351 -15.58965 -15.24050 -15.04500 -14.91266 -14.72500 -14.36748 -14.24804 -13.84317 -13.57822 -13.29328 -12.97026 -12.92306 -12.80128 -12.65997 -12.37299 -12.24807 -12.12945 -12.01075 -11.92073 -11.74236 -11.61983 -11.49359 -11.20893 -10.87500 -10.86945 -10.83504 -10.14707 -10.04460 -8.96370 -7.92954 -5.20846 1.47304 1.50090 1.56183 1.56367 1.61016 2.11434 2.34155 2.57563 3.39231 3.49693 3.54219 3.69064 3.70905 3.76009 3.82629 3.84905 4.24648 4.28025 4.34120 4.40002 4.43992 4.53333 4.56722 4.66269 4.70072 4.74521 4.82254 4.84087 4.87528 4.98261 5.02269 5.12662 5.17757 5.19285 5.24433 5.40864 5.49297 5.52363 5.60599 5.67440 5.80794 6.26505 6.29976 6.58953 7.17454 7.27551 7.35048 8.14794 8.35456 9.30534 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.042434 B = 0.002052 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.685942 B =13638.960815 C =13904.843606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.081 4.081 3 Si 0.972 3.028 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.277 1.277 7 C -0.237 4.237 8 H 0.076 0.924 9 N -0.737 5.737 10 C 0.162 3.838 11 H 0.053 0.947 12 C -0.141 4.141 13 C -0.107 4.107 14 C -0.083 4.083 15 H 0.107 0.893 16 C 0.133 3.867 17 N -0.709 5.709 18 C 0.521 3.479 19 O -0.580 6.580 20 C -0.118 4.118 21 H 0.132 0.868 22 C -0.102 4.102 23 C -0.128 4.128 24 C 0.515 3.485 25 O -0.608 6.608 26 N -0.708 5.708 27 C 0.121 3.879 28 C -0.117 4.117 29 H 0.250 0.750 30 H 0.371 0.629 31 H 0.048 0.952 32 H 0.036 0.964 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.048 0.952 36 H 0.062 0.938 37 H 0.418 0.582 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.119 0.881 41 H 0.107 0.893 42 H 0.408 0.592 43 H 0.119 0.881 44 H 0.074 0.926 45 H 0.052 0.948 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.271 -25.372 -2.802 26.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.273 4.273 3 Si 0.801 3.199 4 H -0.205 1.205 5 H -0.225 1.225 6 H -0.203 1.203 7 C -0.369 4.369 8 H 0.094 0.906 9 N -0.376 5.376 10 C 0.054 3.946 11 H 0.071 0.929 12 C -0.181 4.181 13 C -0.145 4.145 14 C -0.102 4.102 15 H 0.125 0.875 16 C 0.009 3.991 17 N -0.362 5.362 18 C 0.307 3.693 19 O -0.459 6.459 20 C -0.139 4.139 21 H 0.150 0.850 22 C -0.140 4.140 23 C -0.168 4.168 24 C 0.304 3.696 25 O -0.491 6.491 26 N -0.358 5.358 27 C -0.004 4.004 28 C -0.156 4.156 29 H 0.058 0.942 30 H 0.202 0.798 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.256 0.744 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.137 0.863 41 H 0.125 0.875 42 H 0.245 0.755 43 H 0.137 0.863 44 H 0.093 0.907 45 H 0.071 0.929 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.593 -25.604 -2.975 26.606 hybrid contribution 0.232 1.342 0.139 1.369 sum 6.824 -24.262 -2.836 25.363 Atomic orbital electron populations 1.69812 1.06629 1.25988 1.59837 1.25573 0.96375 1.01155 1.04166 0.85233 0.77172 0.79312 0.78195 1.20478 1.22459 1.20279 1.19603 0.91418 0.85344 1.40550 0.90600 1.42626 1.05371 1.01225 1.88416 1.21490 0.94155 0.84574 0.94380 0.92947 1.22909 0.99793 0.96559 0.98858 1.22146 1.01002 0.93858 0.97504 1.21830 0.96376 0.93927 0.98052 0.87491 1.21324 0.95353 0.84007 0.98463 1.45908 1.11113 1.14965 1.64169 1.20654 0.86777 0.85078 0.76744 1.90746 1.16399 1.82575 1.56173 1.21630 0.98973 0.92234 1.01086 0.84992 1.21442 0.96887 0.93978 1.01675 1.21664 0.95786 0.99602 0.99744 1.20648 0.84127 0.84276 0.80574 1.90761 1.65527 1.22049 1.70743 1.45377 1.35836 1.18451 1.36183 1.21461 1.00196 0.82798 0.95897 1.22474 0.98758 0.93968 1.00390 0.94168 0.79764 0.93346 0.94491 0.89382 0.91236 0.93337 0.91978 0.74406 0.89870 0.91382 0.86275 0.87497 0.75507 0.86270 0.90727 0.92887 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.66 13.06 21.65 0.28 -59.38 16 2 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 3 Si 0.97 45.84 29.55 68.60 2.03 47.87 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.24 -12.99 9.98 84.03 0.84 -12.15 16 8 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 9 N -0.74 -36.53 5.25 -316.88 -1.66 -38.19 16 10 C 0.16 5.92 3.54 46.28 0.16 6.08 16 11 H 0.05 1.91 8.12 -2.39 -0.02 1.89 16 12 C -0.14 -4.45 6.51 31.67 0.21 -4.24 16 13 C -0.11 -2.09 6.13 31.32 0.19 -1.89 16 14 C -0.08 -1.52 2.98 -10.07 -0.03 -1.55 16 15 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 16 C 0.13 2.46 4.71 86.38 0.41 2.87 16 17 N -0.71 -8.40 5.21 -463.06 -2.41 -10.82 16 18 C 0.52 7.91 7.14 87.66 0.63 8.53 16 19 O -0.58 -14.87 15.89 -3.04 -0.05 -14.92 16 20 C -0.12 -0.94 2.59 -11.45 -0.03 -0.97 16 21 H 0.13 0.53 8.12 -2.39 -0.02 0.51 16 22 C -0.10 -1.11 4.71 30.73 0.14 -0.96 16 23 C -0.13 -1.32 6.03 29.71 0.18 -1.15 16 24 C 0.52 7.78 7.71 87.71 0.68 8.46 16 25 O -0.61 -15.10 17.78 -3.04 -0.05 -15.16 16 26 N -0.71 -6.20 5.45 -467.30 -2.55 -8.75 16 27 C 0.12 0.56 6.34 86.49 0.55 1.11 16 28 C -0.12 -3.31 5.96 31.66 0.19 -3.12 16 29 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 30 H 0.37 19.99 7.72 -92.71 -0.72 19.28 16 31 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.07 1.25 7.58 -2.39 -0.02 1.23 16 35 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.42 1.96 7.99 -92.71 -0.74 1.22 16 38 H 0.08 1.06 7.89 -2.39 -0.02 1.04 16 39 H 0.07 0.90 8.13 -2.39 -0.02 0.88 16 40 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.11 1.11 8.14 -2.39 -0.02 1.10 16 42 H 0.41 2.93 8.80 -92.71 -0.82 2.11 16 43 H 0.12 -0.18 7.88 -2.39 -0.02 -0.20 16 44 H 0.07 0.42 8.11 -2.39 -0.02 0.41 16 45 H 0.05 1.69 7.73 -2.38 -0.02 1.67 16 46 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -78.84 370.85 -1.11 -79.95 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: -1.27 Total: 22.55 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 4.58 Total: -3.16 kcal Atomic # 7 Polarization: -110.80 SS G_CDS: -6.34 Total: -117.14 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -0.10 Total: -30.08 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -78.84 -1.11 -79.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086740896.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.233 kcal (2) G-P(sol) polarization free energy of solvation -78.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds