Wall clock time and date at job start Fri Apr 10 2020 18:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99837 * 2 1 4 4 H 1.48500 * 109.47279 * 270.00535 * 3 2 1 5 5 H 1.48506 * 109.47022 * 30.00251 * 3 2 1 6 6 H 1.48501 * 109.47160 * 149.99965 * 3 2 1 7 7 C 1.38817 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99596 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00130 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99910 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.48756 * 324.96517 * 10 9 7 12 12 C 1.52870 * 109.48759 * 85.00158 * 10 9 7 13 13 C 1.53954 * 109.73196 * 192.86494 * 12 10 9 14 14 C 1.52453 * 110.72579 * 44.35554 * 13 12 10 15 15 C 1.53799 * 109.41009 * 246.26961 * 14 13 12 16 16 C 1.52336 * 109.16001 * 77.84213 * 15 14 13 17 17 N 1.46959 * 109.09804 * 287.30893 * 16 15 14 18 18 C 1.34779 * 120.35840 * 291.65752 * 17 16 15 19 19 O 1.21284 * 119.99858 * 174.44794 * 18 17 16 20 20 C 1.50699 * 120.00380 * 354.44491 * 18 17 16 21 21 H 1.09007 * 115.54798 * 60.69027 * 20 18 17 22 22 C 1.52991 * 117.50037 * 206.35778 * 20 18 17 23 23 C 1.52991 * 117.50009 * 275.02136 * 20 18 17 24 24 H 1.08998 * 117.50094 * 144.99543 * 23 20 18 25 25 C 1.50702 * 117.50112 * 359.97438 * 23 20 18 26 26 N 1.34779 * 120.00178 * 184.85746 * 25 23 20 27 27 O 1.21279 * 119.99770 * 4.85096 * 25 23 20 28 28 C 1.45324 * 119.27511 * 111.63321 * 17 16 15 29 29 H 0.96999 * 120.00597 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99718 * 359.72523 * 9 7 2 31 31 H 1.09004 * 109.42836 * 312.93994 * 12 10 9 32 32 H 1.09002 * 109.43218 * 72.78273 * 12 10 9 33 33 H 1.08993 * 109.23368 * 164.68082 * 13 12 10 34 34 H 1.09004 * 109.22652 * 284.08610 * 13 12 10 35 35 H 1.09000 * 109.47900 * 6.25302 * 14 13 12 36 36 H 1.09004 * 109.47877 * 126.28886 * 14 13 12 37 37 H 1.09005 * 109.52044 * 197.74184 * 15 14 13 38 38 H 1.08995 * 109.52530 * 317.93649 * 15 14 13 39 39 H 1.09006 * 109.53458 * 47.18978 * 16 15 14 40 40 H 1.08993 * 109.53789 * 167.41621 * 16 15 14 41 41 H 1.09001 * 117.50163 * 214.97939 * 22 20 18 42 42 H 1.09006 * 117.50228 * 359.97438 * 22 20 18 43 43 H 0.96998 * 119.99873 * 0.02562 * 26 25 23 44 44 H 0.96998 * 119.99494 * 179.97438 * 26 25 23 45 45 H 1.08999 * 109.67896 * 196.91840 * 28 17 16 46 46 H 1.09004 * 109.67386 * 76.38828 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 1 2.9682 -3.5507 -0.5923 12 6 2.4230 -4.0363 1.4335 13 6 3.4554 -5.1783 1.4227 14 6 4.5433 -4.9124 0.3883 15 6 4.4526 -5.9636 -0.7306 16 6 3.3065 -5.6005 -1.6662 17 7 2.0299 -5.8700 -0.9899 18 6 1.6542 -7.1367 -0.7238 19 8 0.6501 -7.3483 -0.0774 20 6 2.4816 -8.2902 -1.2296 21 1 3.5094 -8.3257 -0.8681 22 6 1.7679 -9.6235 -1.4614 23 6 2.2171 -8.7777 -2.6555 24 1 3.0707 -9.1338 -3.2321 25 6 1.1486 -8.0680 -3.4466 26 7 0.8059 -8.5170 -4.6703 27 8 0.5971 -7.0929 -2.9820 28 6 1.1774 -4.7558 -0.6108 29 1 -0.4851 0.8400 0.0004 30 1 0.3556 -2.3880 0.0039 31 1 2.8464 -3.1696 1.9413 32 1 1.5268 -4.3626 1.9613 33 1 3.9107 -5.2600 2.4096 34 1 2.9524 -6.1146 1.1809 35 1 4.4064 -3.9175 -0.0355 36 1 5.5213 -4.9729 0.8657 37 1 5.3879 -5.9816 -1.2902 38 1 4.2693 -6.9454 -0.2941 39 1 3.3667 -4.5427 -1.9228 40 1 3.3723 -6.2009 -2.5734 41 1 2.3262 -10.5361 -1.2528 42 1 0.6999 -9.6666 -1.2476 43 1 1.2466 -9.2972 -5.0416 44 1 0.1179 -8.0604 -5.1792 45 1 0.4444 -5.0881 0.1243 46 1 0.6651 -4.3694 -1.4919 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088382875.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:36 Heat of formation + Delta-G solvation = -23.521578 kcal Electronic energy + Delta-G solvation = -27652.149532 eV Core-core repulsion = 23964.272680 eV Total energy + Delta-G solvation = -3687.876852 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.81772 -39.32135 -37.53005 -35.91560 -34.70717 -33.78532 -33.56561 -32.12998 -29.77687 -27.44419 -26.07118 -25.25202 -24.28961 -22.98094 -21.99759 -21.54362 -20.56201 -19.04182 -18.70707 -17.48306 -17.28963 -17.18584 -16.20698 -15.67236 -15.56998 -15.21406 -14.60216 -14.36107 -14.19267 -13.86266 -13.71949 -13.46497 -13.35627 -13.06047 -12.71632 -12.48555 -12.23987 -12.16896 -11.53618 -11.23175 -11.00673 -10.88783 -10.81567 -10.79717 -10.72308 -10.55280 -10.29989 -10.14131 -10.07853 -10.05887 -9.86204 -9.67063 -9.59064 -9.40981 -8.80655 -7.96820 -6.87831 -5.70108 -2.98926 2.29689 2.88041 3.15458 3.40481 3.46607 3.51520 3.53510 3.70281 4.44312 4.48890 4.52950 4.64783 4.71867 4.87703 4.99452 5.11843 5.26638 5.37770 5.39999 5.53711 5.59536 5.67237 5.70323 5.75320 5.80964 5.89248 5.97321 6.10669 6.13789 6.17591 6.27223 6.41000 6.52748 6.57319 6.64704 6.69184 6.84318 7.00491 7.09797 7.15835 7.22222 7.74260 7.90963 8.10942 8.47885 8.65401 9.58725 10.17579 10.52271 11.52556 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.018801 B = 0.004105 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.889591 B = 6818.826237 C = 7416.748926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.235 4.235 8 H 0.069 0.931 9 N -0.723 5.723 10 C 0.157 3.843 11 H 0.063 0.937 12 C -0.133 4.133 13 C -0.115 4.115 14 C -0.126 4.126 15 C -0.141 4.141 16 C 0.109 3.891 17 N -0.578 5.578 18 C 0.563 3.437 19 O -0.546 6.546 20 C -0.155 4.155 21 H 0.137 0.863 22 C -0.123 4.123 23 C -0.178 4.178 24 H 0.132 0.868 25 C 0.533 3.467 26 N -0.854 5.854 27 O -0.508 6.508 28 C 0.113 3.887 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.061 0.939 41 H 0.113 0.887 42 H 0.109 0.891 43 H 0.399 0.601 44 H 0.403 0.597 45 H 0.082 0.918 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.683 -22.447 -8.209 25.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.366 4.366 8 H 0.087 0.913 9 N -0.364 5.364 10 C 0.047 3.953 11 H 0.081 0.919 12 C -0.174 4.174 13 C -0.154 4.154 14 C -0.163 4.163 15 C -0.179 4.179 16 C -0.014 4.014 17 N -0.309 5.309 18 C 0.351 3.649 19 O -0.424 6.424 20 C -0.177 4.177 21 H 0.155 0.845 22 C -0.161 4.161 23 C -0.199 4.199 24 H 0.150 0.850 25 C 0.317 3.683 26 N -0.418 5.418 27 O -0.381 6.381 28 C -0.011 4.011 29 H 0.064 0.936 30 H 0.217 0.783 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.111 0.889 40 H 0.079 0.921 41 H 0.131 0.869 42 H 0.128 0.872 43 H 0.227 0.773 44 H 0.234 0.766 45 H 0.100 0.900 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.992 -21.741 -7.407 24.665 hybrid contribution 0.264 0.738 -0.522 0.942 sum 9.256 -21.002 -7.929 24.282 Atomic orbital electron populations 1.69670 1.05082 1.25556 1.57664 1.24734 0.95465 0.97578 1.03163 0.86223 0.78641 0.84088 0.77433 1.21813 1.21847 1.20817 1.19186 0.90849 0.83985 1.42599 0.91272 1.42357 1.05880 0.99567 1.88623 1.20934 0.94829 0.85960 0.93591 0.91909 1.22414 0.97698 0.97028 1.00218 1.21687 0.96478 0.99588 0.97634 1.21812 0.98318 0.99862 0.96333 1.22281 0.98193 0.99500 0.97908 1.21555 0.82722 1.02847 0.94283 1.47264 1.20321 1.05422 1.57931 1.18896 0.84272 0.82906 0.78865 1.90654 1.26661 1.84376 1.40734 1.22514 1.01966 0.96105 0.97072 0.84530 1.23025 1.02820 0.93777 0.96470 1.22322 1.01108 1.05737 0.90781 0.85039 1.19677 0.82956 0.84040 0.81628 1.43713 1.44224 1.34723 1.19141 1.90898 1.53127 1.25670 1.68427 1.21751 0.93368 0.85785 1.00164 0.93551 0.78255 0.91877 0.93032 0.93533 0.92560 0.90269 0.92723 0.91221 0.91696 0.88941 0.92103 0.86910 0.87213 0.77266 0.76587 0.89957 0.91772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.77 13.06 55.49 0.72 -28.05 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.90 22.66 29.55 -169.99 -5.02 17.63 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.23 -6.57 9.90 -15.06 -0.15 -6.72 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.72 -18.71 5.12 -53.27 -0.27 -18.99 16 10 C 0.16 3.25 2.29 -67.77 -0.16 3.10 16 11 H 0.06 1.26 3.29 -51.93 -0.17 1.09 16 12 C -0.13 -2.60 5.33 -26.30 -0.14 -2.74 16 13 C -0.12 -1.82 5.41 -26.51 -0.14 -1.96 16 14 C -0.13 -1.70 5.49 -26.60 -0.15 -1.85 16 15 C -0.14 -1.56 5.42 -26.66 -0.14 -1.70 16 16 C 0.11 1.45 5.04 -4.13 -0.02 1.43 16 17 N -0.58 -9.48 1.10 -174.37 -0.19 -9.67 16 18 C 0.56 9.26 3.23 -10.98 -0.04 9.22 16 19 O -0.55 -11.29 16.01 4.55 0.07 -11.22 16 20 C -0.16 -1.71 4.46 -91.78 -0.41 -2.12 16 21 H 0.14 1.17 5.88 -51.92 -0.31 0.87 16 22 C -0.12 -1.09 9.75 -26.70 -0.26 -1.36 16 23 C -0.18 -1.51 5.95 -91.74 -0.55 -2.05 16 24 H 0.13 0.63 8.14 -51.93 -0.42 0.20 16 25 C 0.53 6.04 7.85 -10.98 -0.09 5.95 16 26 N -0.85 -5.94 8.87 31.22 0.28 -5.66 16 27 O -0.51 -8.58 14.53 4.55 0.07 -8.52 16 28 C 0.11 2.25 5.51 -4.44 -0.02 2.23 16 29 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.38 10.75 7.80 -40.82 -0.32 10.44 16 31 H 0.06 1.34 8.11 -51.93 -0.42 0.92 16 32 H 0.05 1.06 7.87 -51.93 -0.41 0.65 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.91 5.37 -51.93 -0.28 0.63 16 35 H 0.08 1.23 5.47 -51.93 -0.28 0.94 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.67 4.77 -51.93 -0.25 0.43 16 39 H 0.09 1.36 6.07 -51.93 -0.32 1.04 16 40 H 0.06 0.71 7.50 -51.93 -0.39 0.32 16 41 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.11 1.25 7.91 -51.93 -0.41 0.84 16 43 H 0.40 1.33 8.83 -40.82 -0.36 0.97 16 44 H 0.40 2.74 8.93 -40.82 -0.36 2.37 16 45 H 0.08 1.81 6.75 -51.93 -0.35 1.46 16 46 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 LS Contribution 350.25 15.07 5.28 5.28 Total: -1.00 -36.63 350.25 -8.14 -44.77 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -6.71 Total: 13.48 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -2.36 Total: 0.94 kcal Atomic # 7 Polarization: -62.91 SS G_CDS: 0.54 Total: -62.37 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: 0.14 Total: -19.73 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.63 -8.14 -44.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088382875.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.247 kcal (2) G-P(sol) polarization free energy of solvation -36.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds