Wall clock time and date at job start Fri Apr 10 2020 18:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39889 * 125.74735 * 2 1 4 4 C 1.30281 * 109.23428 * 180.02562 * 3 2 1 5 5 C 1.41480 * 108.18959 * 359.97438 * 4 3 2 6 6 C 1.46773 * 126.52240 * 179.97438 * 5 4 3 7 7 O 1.21684 * 120.00448 * 180.02562 * 6 5 4 8 8 N 1.34782 * 119.99500 * 0.02624 * 6 5 4 9 9 C 1.46497 * 119.99786 * 180.02562 * 8 6 5 10 10 H 1.09006 * 109.45375 * 34.96418 * 9 8 6 11 11 C 1.53045 * 109.46268 * 275.00264 * 9 8 6 12 12 C 1.53190 * 109.34313 * 178.63160 * 11 9 8 13 13 N 1.46929 * 108.77277 * 54.61547 * 12 11 9 14 14 C 1.36939 * 120.62427 * 126.37296 * 13 12 11 15 15 H 1.08001 * 119.99489 * 207.68007 * 14 13 12 16 16 C 1.38803 * 120.00513 * 27.68909 * 14 13 12 17 17 N 1.31619 * 120.00080 * 17.35333 * 16 14 13 18 18 Si 1.86797 * 120.00079 * 197.35962 * 16 14 13 19 19 H 1.48506 * 109.47348 * 59.99578 * 18 16 14 20 20 H 1.48498 * 109.47512 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47373 * 299.99844 * 18 16 14 22 22 C 1.46926 * 118.73807 * 306.38928 * 13 12 11 23 23 C 1.53041 * 109.48666 * 154.91520 * 9 8 6 24 24 H 1.08996 * 109.46886 * 61.40007 * 23 9 8 25 25 O 1.42898 * 109.49658 * 301.31934 * 23 9 8 26 26 C 1.34841 * 125.74419 * 180.33653 * 2 1 3 27 27 N 1.38007 * 126.45179 * 359.95255 * 26 2 1 28 28 H 1.09004 * 109.47405 * 89.97214 * 1 2 3 29 29 H 1.09002 * 109.47392 * 209.97230 * 1 2 3 30 30 H 1.09000 * 109.47448 * 329.97368 * 1 2 3 31 31 H 1.08004 * 125.90632 * 179.97438 * 4 3 2 32 32 H 0.96998 * 120.00121 * 359.97438 * 8 6 5 33 33 H 1.09001 * 109.49503 * 58.65648 * 11 9 8 34 34 H 1.09008 * 109.48869 * 298.59874 * 11 9 8 35 35 H 1.09003 * 109.58588 * 174.39950 * 12 11 9 36 36 H 1.08996 * 109.58765 * 294.68805 * 12 11 9 37 37 H 0.97006 * 120.00073 * 180.02562 * 17 16 14 38 38 H 1.09010 * 109.57898 * 173.39920 * 22 13 12 39 39 H 1.08996 * 109.58654 * 293.81932 * 22 13 12 40 40 H 0.96692 * 113.99858 * 180.13188 * 25 23 9 41 41 H 0.96998 * 120.00720 * 180.17818 * 27 26 2 42 42 H 0.97004 * 120.00102 * 0.18492 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2823 1.1353 0.0000 4 6 3.5313 0.7650 -0.0006 5 6 3.5727 -0.6492 -0.0003 6 6 4.7773 -1.4878 -0.0013 7 8 4.6746 -2.7003 -0.0015 8 7 5.9972 -0.9148 -0.0020 9 6 7.1996 -1.7518 -0.0036 10 1 7.0158 -2.6501 -0.5930 11 6 7.5474 -2.1472 1.4334 12 6 8.7849 -3.0502 1.4257 13 7 9.8680 -2.3620 0.7102 14 6 11.0934 -2.1911 1.2971 15 1 11.7153 -1.3544 1.0148 16 6 11.5363 -3.0931 2.2547 17 7 10.9656 -4.2745 2.3597 18 14 12.9420 -2.6302 3.3944 19 1 12.5664 -1.4278 4.1807 20 1 13.2217 -3.7582 4.3189 21 1 14.1553 -2.3365 2.5900 22 6 9.6112 -1.8604 -0.6467 23 6 8.3646 -0.9707 -0.6158 24 1 8.5646 -0.0848 -0.0130 25 8 8.0270 -0.5762 -1.9471 26 6 2.2527 -1.0944 -0.0064 27 7 1.8307 -2.4084 -0.0132 28 1 -0.3634 0.0005 -1.0277 29 1 -0.3634 -0.8902 0.5134 30 1 -0.3634 0.8897 0.5142 31 1 4.3872 1.4237 -0.0011 32 1 6.0791 0.0517 -0.0023 33 1 6.7082 -2.6836 1.8764 34 1 7.7550 -1.2504 2.0173 35 1 9.0953 -3.2533 2.4507 36 1 8.5498 -3.9880 0.9224 37 1 11.2749 -4.9047 3.0291 38 1 10.4671 -1.2785 -0.9891 39 1 9.4443 -2.7002 -1.3212 40 1 8.7221 -0.0775 -2.3977 41 1 2.4821 -3.1270 -0.0149 42 1 0.8826 -2.6133 -0.0164 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090215511.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:40 Heat of formation + Delta-G solvation = 15.068848 kcal Electronic energy + Delta-G solvation = -25954.660698 eV Core-core repulsion = 22164.916909 eV Total energy + Delta-G solvation = -3789.743789 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.39640 -39.25359 -37.63764 -35.33268 -35.14949 -33.99538 -33.22435 -31.83500 -30.06318 -28.85556 -28.27434 -27.14842 -25.02482 -22.86276 -22.19292 -21.69594 -20.74092 -19.96000 -19.37298 -18.07247 -17.17101 -16.73498 -16.41839 -16.14419 -15.92306 -15.58819 -14.82915 -14.68230 -14.23876 -13.98613 -13.84398 -13.56394 -13.25898 -13.18128 -13.00653 -12.93154 -12.62559 -12.18313 -11.93756 -11.49003 -11.39587 -11.07363 -10.95508 -10.82509 -10.58942 -10.27886 -10.20766 -9.89544 -9.69690 -9.61503 -9.31693 -9.16629 -8.62667 -8.38713 -7.87977 -6.72920 -5.81209 -3.24935 1.79742 2.07165 2.25074 3.37552 3.43920 3.44543 3.51766 3.68665 3.81613 4.26440 4.42783 4.59820 4.76263 4.81401 5.02115 5.15401 5.33206 5.35787 5.39215 5.53449 5.62804 5.67717 5.85748 6.06928 6.15465 6.22120 6.43511 6.45780 6.55496 6.65138 6.75696 6.83960 7.03190 7.17314 7.26685 7.35601 7.66020 7.69626 7.76394 8.00067 8.03146 8.41776 8.73244 9.17177 9.79824 10.35882 11.27282 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.025949 B = 0.003072 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.788000 B = 9111.296886 C = 9433.868756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.404 5.404 3 N -0.310 5.310 4 C 0.115 3.885 5 C -0.366 4.366 6 C 0.603 3.397 7 O -0.571 6.571 8 N -0.713 5.713 9 C 0.166 3.834 10 H 0.086 0.914 11 C -0.146 4.146 12 C 0.171 3.829 13 N -0.588 5.588 14 C -0.259 4.259 15 H 0.066 0.934 16 C 0.005 3.995 17 N -0.900 5.900 18 Si 0.904 3.096 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.121 3.879 23 C 0.080 3.920 24 H 0.056 0.944 25 O -0.570 6.570 26 C 0.431 3.569 27 N -0.830 5.830 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.188 0.812 32 H 0.394 0.606 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.092 0.908 36 H 0.023 0.977 37 H 0.256 0.744 38 H 0.059 0.941 39 H 0.028 0.972 40 H 0.372 0.628 41 H 0.433 0.567 42 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.150 8.659 -5.088 21.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.193 5.193 3 N -0.129 5.129 4 C -0.075 4.075 5 C -0.385 4.385 6 C 0.392 3.608 7 O -0.452 6.452 8 N -0.361 5.361 9 C 0.062 3.938 10 H 0.104 0.896 11 C -0.186 4.186 12 C 0.045 3.955 13 N -0.312 5.312 14 C -0.388 4.388 15 H 0.084 0.916 16 C -0.194 4.194 17 N -0.543 5.543 18 Si 0.734 3.266 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.209 1.209 22 C -0.007 4.007 23 C 0.019 3.981 24 H 0.073 0.927 25 O -0.374 6.374 26 C 0.196 3.804 27 N -0.381 5.381 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.204 0.796 32 H 0.227 0.773 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.041 0.959 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.046 0.954 40 H 0.218 0.782 41 H 0.270 0.730 42 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -20.617 8.365 -4.824 22.766 hybrid contribution 1.591 -0.084 0.483 1.665 sum -19.026 8.280 -4.342 21.199 Atomic orbital electron populations 1.21773 0.74447 1.04398 1.03241 1.48137 1.06283 1.02443 1.62445 1.77094 1.01810 1.05324 1.28680 1.23770 0.95138 0.93576 0.95031 1.19400 0.91059 0.93652 1.34404 1.16897 0.82181 0.86676 0.75061 1.90667 1.86891 1.14286 1.53376 1.45726 1.05259 1.09886 1.75191 1.20926 0.81825 0.93741 0.97262 0.89562 1.22596 1.00490 1.01294 0.94236 1.20823 0.83919 0.91194 0.99546 1.44037 1.09924 1.66957 1.10304 1.19119 0.94500 1.06006 1.19186 0.91605 1.25057 0.98333 0.94545 1.01505 1.70032 1.43745 1.05094 1.35446 0.86350 0.82009 0.77448 0.80816 1.20964 1.21598 1.20860 1.21529 0.94110 0.95862 0.89154 1.22777 0.95781 0.97247 0.82328 0.92650 1.86498 1.45430 1.76972 1.28501 1.18058 0.89519 0.81877 0.90905 1.41805 1.11119 1.02818 1.82329 0.90876 0.90194 0.88803 0.79554 0.77313 0.91946 0.92440 0.88986 0.95891 0.93430 0.92262 0.95364 0.78151 0.73019 0.77446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.60 11.24 59.85 0.67 1.27 16 2 N -0.40 -4.37 4.00 -66.82 -0.27 -4.64 16 3 N -0.31 -3.90 12.47 30.88 0.38 -3.51 16 4 C 0.11 1.40 11.49 -16.98 -0.20 1.21 16 5 C -0.37 -5.16 6.15 -104.82 -0.64 -5.81 16 6 C 0.60 10.07 7.76 -12.81 -0.10 9.97 16 7 O -0.57 -11.05 14.80 5.20 0.08 -10.97 16 8 N -0.71 -11.27 4.91 -55.04 -0.27 -11.54 16 9 C 0.17 3.08 2.12 -67.89 -0.14 2.94 16 10 H 0.09 1.84 7.57 -51.93 -0.39 1.44 16 11 C -0.15 -2.93 5.65 -26.61 -0.15 -3.09 16 12 C 0.17 4.15 5.31 -3.71 -0.02 4.13 16 13 N -0.59 -14.53 2.99 -172.32 -0.52 -15.05 16 14 C -0.26 -6.96 9.58 -15.06 -0.14 -7.10 16 15 H 0.07 1.72 7.89 -52.49 -0.41 1.30 16 16 C 0.00 0.13 4.91 -17.43 -0.09 0.04 16 17 N -0.90 -25.99 11.19 55.49 0.62 -25.37 16 18 Si 0.90 21.40 29.59 -169.99 -5.03 16.37 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 C 0.12 2.49 6.14 -3.71 -0.02 2.47 16 23 C 0.08 1.38 3.14 -26.61 -0.08 1.30 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 25 O -0.57 -8.72 13.16 -35.23 -0.46 -9.19 16 26 C 0.43 5.27 7.98 -153.79 -1.23 4.04 16 27 N -0.83 -8.01 9.02 31.40 0.28 -7.72 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.28 7.47 -51.93 -0.39 -0.11 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.19 1.70 7.50 -52.48 -0.39 1.30 16 32 H 0.39 5.21 7.55 -40.82 -0.31 4.91 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 35 H 0.09 2.47 6.03 -51.93 -0.31 2.15 16 36 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 38 H 0.06 1.14 7.93 -51.92 -0.41 0.73 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.37 4.10 9.08 45.56 0.41 4.51 16 41 H 0.43 4.93 7.01 -40.82 -0.29 4.64 16 42 H 0.40 2.32 8.05 -40.82 -0.33 1.99 16 LS Contribution 346.33 15.07 5.22 5.22 Total: -1.00 -34.87 346.33 -7.02 -41.89 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -4.92 Total: 13.14 kcal Atomic # 6 Polarization: 13.52 SS G_CDS: -2.14 Total: 11.37 kcal Atomic # 7 Polarization: -68.07 SS G_CDS: 0.24 Total: -67.83 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.39 Total: -20.16 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.87 -7.02 -41.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090215511.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.963 kcal (2) G-P(sol) polarization free energy of solvation -34.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds