Wall clock time and date at job start Fri Apr 10 2020 18:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39889 * 125.74735 * 2 1 4 4 C 1.30281 * 109.23428 * 180.02562 * 3 2 1 5 5 C 1.41480 * 108.18959 * 359.97438 * 4 3 2 6 6 C 1.46773 * 126.52240 * 179.97438 * 5 4 3 7 7 O 1.21684 * 120.00448 * 180.02562 * 6 5 4 8 8 N 1.34782 * 119.99500 * 0.02624 * 6 5 4 9 9 C 1.46497 * 119.99786 * 180.02562 * 8 6 5 10 10 H 1.09006 * 109.45375 * 34.96418 * 9 8 6 11 11 C 1.53045 * 109.46268 * 275.00264 * 9 8 6 12 12 C 1.53190 * 109.34313 * 178.63160 * 11 9 8 13 13 N 1.46929 * 108.77277 * 54.61547 * 12 11 9 14 14 C 1.36939 * 120.62427 * 126.37296 * 13 12 11 15 15 H 1.08001 * 119.99489 * 207.68007 * 14 13 12 16 16 C 1.38803 * 120.00513 * 27.68909 * 14 13 12 17 17 N 1.31619 * 120.00080 * 17.35333 * 16 14 13 18 18 Si 1.86797 * 120.00079 * 197.35962 * 16 14 13 19 19 H 1.48506 * 109.47348 * 59.99578 * 18 16 14 20 20 H 1.48498 * 109.47512 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47373 * 299.99844 * 18 16 14 22 22 C 1.46926 * 118.73807 * 306.38928 * 13 12 11 23 23 C 1.53041 * 109.48666 * 154.91520 * 9 8 6 24 24 H 1.08996 * 109.46886 * 61.40007 * 23 9 8 25 25 O 1.42898 * 109.49658 * 301.31934 * 23 9 8 26 26 C 1.34841 * 125.74419 * 180.33653 * 2 1 3 27 27 N 1.38007 * 126.45179 * 359.95255 * 26 2 1 28 28 H 1.09004 * 109.47405 * 89.97214 * 1 2 3 29 29 H 1.09002 * 109.47392 * 209.97230 * 1 2 3 30 30 H 1.09000 * 109.47448 * 329.97368 * 1 2 3 31 31 H 1.08004 * 125.90632 * 179.97438 * 4 3 2 32 32 H 0.96998 * 120.00121 * 359.97438 * 8 6 5 33 33 H 1.09001 * 109.49503 * 58.65648 * 11 9 8 34 34 H 1.09008 * 109.48869 * 298.59874 * 11 9 8 35 35 H 1.09003 * 109.58588 * 174.39950 * 12 11 9 36 36 H 1.08996 * 109.58765 * 294.68805 * 12 11 9 37 37 H 0.97006 * 120.00073 * 180.02562 * 17 16 14 38 38 H 1.09010 * 109.57898 * 173.39920 * 22 13 12 39 39 H 1.08996 * 109.58654 * 293.81932 * 22 13 12 40 40 H 0.96692 * 113.99858 * 180.13188 * 25 23 9 41 41 H 0.96998 * 120.00720 * 180.17818 * 27 26 2 42 42 H 0.97004 * 120.00102 * 0.18492 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2823 1.1353 0.0000 4 6 3.5313 0.7650 -0.0006 5 6 3.5727 -0.6492 -0.0003 6 6 4.7773 -1.4878 -0.0013 7 8 4.6746 -2.7003 -0.0015 8 7 5.9972 -0.9148 -0.0020 9 6 7.1996 -1.7518 -0.0036 10 1 7.0158 -2.6501 -0.5930 11 6 7.5474 -2.1472 1.4334 12 6 8.7849 -3.0502 1.4257 13 7 9.8680 -2.3620 0.7102 14 6 11.0934 -2.1911 1.2971 15 1 11.7153 -1.3544 1.0148 16 6 11.5363 -3.0931 2.2547 17 7 10.9656 -4.2745 2.3597 18 14 12.9420 -2.6302 3.3944 19 1 12.5664 -1.4278 4.1807 20 1 13.2217 -3.7582 4.3189 21 1 14.1553 -2.3365 2.5900 22 6 9.6112 -1.8604 -0.6467 23 6 8.3646 -0.9707 -0.6158 24 1 8.5646 -0.0848 -0.0130 25 8 8.0270 -0.5762 -1.9471 26 6 2.2527 -1.0944 -0.0064 27 7 1.8307 -2.4084 -0.0132 28 1 -0.3634 0.0005 -1.0277 29 1 -0.3634 -0.8902 0.5134 30 1 -0.3634 0.8897 0.5142 31 1 4.3872 1.4237 -0.0011 32 1 6.0791 0.0517 -0.0023 33 1 6.7082 -2.6836 1.8764 34 1 7.7550 -1.2504 2.0173 35 1 9.0953 -3.2533 2.4507 36 1 8.5498 -3.9880 0.9224 37 1 11.2749 -4.9047 3.0291 38 1 10.4671 -1.2785 -0.9891 39 1 9.4443 -2.7002 -1.3212 40 1 8.7221 -0.0775 -2.3977 41 1 2.4821 -3.1270 -0.0149 42 1 0.8826 -2.6133 -0.0164 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090215511.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:40 Heat of formation + Delta-G solvation = -13.908742 kcal Electronic energy + Delta-G solvation = -25955.917261 eV Core-core repulsion = 22164.916909 eV Total energy + Delta-G solvation = -3791.000352 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.30297 -40.64980 -39.09503 -36.92719 -36.08625 -35.39841 -34.06571 -33.60268 -31.73692 -30.29453 -29.49296 -27.96861 -26.77963 -24.30393 -23.73884 -23.07251 -21.72299 -21.31244 -20.82425 -19.13660 -18.70874 -17.95347 -17.81626 -17.26006 -16.93846 -16.71486 -16.60175 -15.74717 -15.65177 -15.52580 -15.34923 -14.90336 -14.68298 -14.41359 -14.16808 -13.81918 -13.68029 -13.49085 -13.43716 -13.22177 -12.94385 -12.65694 -12.34657 -12.24408 -12.10142 -12.01537 -11.90918 -11.83235 -11.29850 -11.03359 -10.74477 -10.52146 -10.04827 -9.84369 -8.83846 -8.73587 -7.87630 -5.34783 0.84794 1.27639 1.31010 1.50094 1.52973 1.59531 2.41569 2.51661 2.62786 2.78886 3.19147 3.29630 3.57647 3.68043 3.94112 4.06468 4.14439 4.20863 4.28284 4.39795 4.45120 4.52240 4.57606 4.61342 4.67330 4.79327 4.90859 5.04012 5.09258 5.17021 5.38794 5.42525 5.57715 5.62994 5.68030 5.70277 6.25595 6.36454 6.52461 6.74299 6.93276 6.94657 7.12490 7.48713 7.81060 8.33870 9.19545 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.025949 B = 0.003072 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.788000 B = 9111.296886 C = 9433.868756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.401 5.401 3 N -0.326 5.326 4 C 0.118 3.882 5 C -0.396 4.396 6 C 0.597 3.403 7 O -0.606 6.606 8 N -0.702 5.702 9 C 0.175 3.825 10 H 0.054 0.946 11 C -0.128 4.128 12 C 0.181 3.819 13 N -0.604 5.604 14 C -0.266 4.266 15 H 0.077 0.923 16 C -0.051 4.051 17 N -0.937 5.937 18 Si 0.971 3.029 19 H -0.275 1.275 20 H -0.298 1.298 21 H -0.273 1.273 22 C 0.118 3.882 23 C 0.102 3.898 24 H 0.073 0.927 25 O -0.570 6.570 26 C 0.429 3.571 27 N -0.819 5.819 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.212 0.788 32 H 0.409 0.591 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.062 0.938 36 H -0.009 1.009 37 H 0.250 0.750 38 H 0.075 0.925 39 H 0.011 0.989 40 H 0.395 0.605 41 H 0.426 0.574 42 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.187 11.163 -5.480 23.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.190 5.190 3 N -0.145 5.145 4 C -0.072 4.072 5 C -0.415 4.415 6 C 0.389 3.611 7 O -0.490 6.490 8 N -0.351 5.351 9 C 0.070 3.930 10 H 0.072 0.928 11 C -0.168 4.168 12 C 0.054 3.946 13 N -0.328 5.328 14 C -0.395 4.395 15 H 0.095 0.905 16 C -0.247 4.247 17 N -0.583 5.583 18 Si 0.799 3.201 19 H -0.201 1.201 20 H -0.224 1.224 21 H -0.199 1.199 22 C -0.009 4.009 23 C 0.041 3.959 24 H 0.091 0.909 25 O -0.377 6.377 26 C 0.192 3.808 27 N -0.369 5.369 28 H 0.106 0.894 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.229 0.771 32 H 0.245 0.755 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.009 0.991 37 H 0.059 0.941 38 H 0.094 0.906 39 H 0.029 0.971 40 H 0.245 0.755 41 H 0.262 0.738 42 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -21.702 10.941 -5.258 24.866 hybrid contribution 1.807 -0.889 0.505 2.076 sum -19.895 10.052 -4.753 22.792 Atomic orbital electron populations 1.22203 0.71725 1.06162 1.04817 1.48440 1.07667 1.01393 1.61495 1.77037 1.02114 1.06404 1.28896 1.24139 0.95896 0.93006 0.94174 1.19320 0.90754 0.94418 1.37036 1.17317 0.82967 0.86545 0.74290 1.90646 1.87401 1.15916 1.55027 1.45473 1.04189 1.10352 1.75118 1.20551 0.83558 0.93461 0.95459 0.92775 1.22316 0.98100 1.00534 0.95849 1.20537 0.85634 0.91058 0.97332 1.44249 1.09516 1.67029 1.12021 1.19542 0.95094 1.05907 1.18998 0.90547 1.25876 1.01117 0.94473 1.03216 1.70207 1.45640 1.06241 1.36164 0.85289 0.79294 0.76859 0.78671 1.20094 1.22433 1.19867 1.21697 0.96494 0.95950 0.86739 1.22308 0.93182 0.96696 0.83710 0.90872 1.86471 1.46464 1.77323 1.27438 1.18168 0.89529 0.82921 0.90218 1.41776 1.12136 1.01777 1.81236 0.89364 0.87668 0.87933 0.77107 0.75475 0.92541 0.91416 0.91995 0.99106 0.94059 0.90640 0.97096 0.75521 0.73828 0.75301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.80 11.24 127.77 1.44 2.24 16 2 N -0.40 -7.79 4.00 -365.30 -1.46 -9.25 16 3 N -0.33 -7.50 12.47 -56.23 -0.70 -8.21 16 4 C 0.12 2.65 11.49 85.72 0.99 3.63 16 5 C -0.40 -10.72 6.15 -19.99 -0.12 -10.84 16 6 C 0.60 19.75 7.76 86.47 0.67 20.42 16 7 O -0.61 -23.89 14.80 -4.30 -0.06 -23.95 16 8 N -0.70 -21.46 4.91 -446.26 -2.19 -23.65 16 9 C 0.18 6.45 2.12 45.02 0.10 6.54 16 10 H 0.05 2.37 7.57 -2.38 -0.02 2.35 16 11 C -0.13 -5.21 5.65 30.67 0.17 -5.04 16 12 C 0.18 9.11 5.31 86.36 0.46 9.57 16 13 N -0.60 -30.12 2.99 -699.09 -2.09 -32.22 16 14 C -0.27 -14.26 9.58 84.03 0.81 -13.45 16 15 H 0.08 3.87 7.89 -2.91 -0.02 3.85 16 16 C -0.05 -2.85 4.91 84.86 0.42 -2.43 16 17 N -0.94 -55.96 11.19 21.65 0.24 -55.72 16 18 Si 0.97 44.21 29.59 68.60 2.03 46.24 16 19 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 22 C 0.12 4.77 6.14 86.36 0.53 5.30 16 23 C 0.10 3.37 3.14 30.67 0.10 3.46 16 24 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 25 O -0.57 -15.96 13.16 -148.98 -1.96 -17.92 16 26 C 0.43 9.84 7.98 132.70 1.06 10.90 16 27 N -0.82 -14.74 9.02 -54.57 -0.49 -15.23 16 28 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.10 0.39 7.47 -2.39 -0.02 0.37 16 30 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.21 3.28 7.50 -2.91 -0.02 3.26 16 32 H 0.41 9.90 7.55 -92.71 -0.70 9.20 16 33 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.07 2.62 8.14 -2.38 -0.02 2.60 16 35 H 0.06 3.48 6.03 -2.39 -0.01 3.46 16 36 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 37 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 38 H 0.08 2.78 7.93 -2.38 -0.02 2.76 16 39 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.39 7.32 9.08 -74.06 -0.67 6.65 16 41 H 0.43 9.54 7.01 -92.71 -0.65 8.89 16 42 H 0.42 4.01 8.05 -92.71 -0.75 3.26 16 Total: -1.00 -77.31 346.33 -1.75 -79.07 By element: Atomic # 1 Polarization: 32.18 SS G_CDS: -1.67 Total: 30.51 kcal Atomic # 6 Polarization: 23.70 SS G_CDS: 6.60 Total: 30.31 kcal Atomic # 7 Polarization: -137.57 SS G_CDS: -6.70 Total: -144.26 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -2.02 Total: -41.87 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -77.31 -1.75 -79.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090215511.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.160 kcal (2) G-P(sol) polarization free energy of solvation -77.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds