Wall clock time and date at job start Fri Apr 10 2020 18:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46494 * 109.46812 * 2 1 4 4 N 1.40518 * 127.42340 * 264.97614 * 3 2 1 5 5 H 0.97003 * 126.16701 * 0.02562 * 4 3 2 6 6 N 1.28705 * 107.67365 * 180.27976 * 4 3 2 7 7 N 1.28410 * 111.08468 * 359.58933 * 6 4 3 8 8 C 1.35135 * 109.87524 * 0.41802 * 7 6 4 9 9 N 1.32514 * 126.89478 * 179.77229 * 8 7 6 10 10 C 1.34067 * 120.00115 * 359.97438 * 9 8 7 11 11 O 1.21798 * 119.99908 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99996 * 179.97438 * 10 9 8 13 13 C 1.46505 * 119.99569 * 180.02562 * 12 10 9 14 14 C 1.53038 * 109.46128 * 275.02612 * 13 12 10 15 15 C 1.53190 * 109.31417 * 178.60384 * 14 13 12 16 16 N 1.46929 * 108.76706 * 54.65443 * 15 14 13 17 17 C 1.36933 * 120.62826 * 126.36107 * 16 15 14 18 18 H 1.08001 * 120.00247 * 331.86763 * 17 16 15 19 19 C 1.38814 * 119.99907 * 151.86625 * 17 16 15 20 20 N 1.31616 * 119.99826 * 343.06988 * 19 17 16 21 21 Si 1.86798 * 120.00002 * 163.06657 * 19 17 16 22 22 H 1.48501 * 109.47106 * 89.99858 * 21 19 17 23 23 H 1.48499 * 109.47275 * 209.99841 * 21 19 17 24 24 H 1.48498 * 109.47350 * 330.00056 * 21 19 17 25 25 C 1.46921 * 118.73710 * 306.39106 * 16 15 14 26 26 C 1.53046 * 109.45583 * 154.97828 * 13 12 10 27 27 H 1.08993 * 109.47488 * 60.00148 * 1 2 3 28 28 H 1.09005 * 109.46927 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47095 * 299.99445 * 1 2 3 30 30 H 1.09001 * 109.46756 * 240.00149 * 2 1 3 31 31 H 1.08995 * 109.47153 * 120.00266 * 2 1 3 32 32 H 0.96996 * 120.00745 * 0.02562 * 12 10 9 33 33 H 1.08993 * 109.46204 * 35.00608 * 13 12 10 34 34 H 1.08993 * 109.50168 * 298.56760 * 14 13 12 35 35 H 1.09003 * 109.49828 * 58.66875 * 14 13 12 36 36 H 1.09006 * 109.59770 * 294.87396 * 15 14 13 37 37 H 1.08994 * 109.70869 * 174.51161 * 15 14 13 38 38 H 0.97004 * 119.99519 * 180.02562 * 20 19 17 39 39 H 1.09001 * 109.59060 * 293.81335 * 25 16 15 40 40 H 1.09010 * 109.70014 * 173.45996 * 25 16 15 41 41 H 1.09004 * 109.49368 * 301.32948 * 26 13 12 42 42 H 1.09000 * 109.50047 * 61.40025 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3951 2.1537 -1.1117 5 1 2.3802 1.8683 -2.0386 6 7 2.7685 3.3065 -0.6779 7 7 2.6681 3.3738 0.6005 8 6 2.2074 2.2004 1.0875 9 7 1.9826 1.9000 2.3584 10 6 2.2165 2.8107 3.3141 11 8 2.6352 3.9144 3.0141 12 7 1.9875 2.5052 4.6066 13 6 2.2426 3.5007 5.6508 14 6 3.7185 3.4516 6.0524 15 6 3.9891 4.5172 7.1191 16 7 3.0535 4.3178 8.2344 17 6 3.5147 4.1899 9.5174 18 1 4.5001 3.7871 9.6995 19 6 2.7155 4.5779 10.5841 20 7 1.6781 5.3613 10.3783 21 14 3.1124 3.9880 12.3115 22 1 4.0277 4.9563 12.9671 23 1 1.8578 3.8818 13.0988 24 1 3.7672 2.6571 12.2419 25 6 1.6140 4.2576 7.9467 26 6 1.3702 3.1950 6.8705 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6537 1.6264 4.8456 33 1 2.0021 4.4940 5.2721 34 1 3.9536 2.4662 6.4545 35 1 4.3401 3.6461 5.1783 36 1 3.8413 5.5087 6.6912 37 1 5.0133 4.4241 7.4802 38 1 1.1199 5.6327 11.1237 39 1 1.2725 5.2280 7.5863 40 1 1.0691 3.9919 8.8527 41 1 0.3200 3.2071 6.5788 42 1 1.6272 2.2118 7.2645 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001310735871.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:57 Heat of formation + Delta-G solvation = 162.222508 kcal Electronic energy + Delta-G solvation = -25525.645313 eV Core-core repulsion = 21774.575337 eV Total energy + Delta-G solvation = -3751.069977 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.165 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -43.43480 -39.44843 -37.34478 -36.36651 -34.88666 -33.89429 -32.38297 -31.86089 -30.80110 -29.88459 -29.08296 -25.58523 -24.98472 -24.23057 -23.06015 -22.04422 -21.53599 -20.24226 -19.41810 -18.93406 -17.61848 -17.21756 -16.90128 -16.37544 -15.58478 -15.02371 -14.75137 -14.59136 -14.20137 -14.07775 -13.60189 -13.45983 -13.38457 -12.84933 -12.77386 -12.57363 -12.18899 -12.11704 -11.79438 -11.67442 -11.29181 -11.26051 -11.00761 -10.78224 -10.62593 -10.59189 -10.29590 -10.10758 -9.88724 -9.62624 -9.40587 -9.01683 -8.56237 -8.38390 -8.13108 -6.55872 -5.69198 -3.10531 0.14967 0.33597 2.03155 2.82751 3.44034 3.50709 3.53543 3.56634 3.82706 4.12909 4.14670 4.32363 4.51389 4.58628 4.61827 4.74201 5.10301 5.25825 5.46861 5.54493 5.57666 5.68064 5.80012 5.94643 6.11082 6.26811 6.36253 6.47745 6.60231 6.71389 6.80707 6.82558 6.96922 7.16611 7.25138 7.32598 7.47101 7.73844 7.78584 7.89106 8.24761 8.55643 9.19175 9.31727 9.95485 10.53390 11.39804 Molecular weight = 309.17amu Principal moments of inertia in cm(-1) A = 0.034429 B = 0.002613 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.073366 B =10711.121314 C =11079.542725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.144 3.856 3 N -0.422 5.422 4 N -0.314 5.314 5 H 0.476 0.524 6 N 0.103 4.897 7 N -0.270 5.270 8 C 0.561 3.439 9 N -0.617 5.617 10 C 0.669 3.331 11 O -0.580 6.580 12 N -0.710 5.710 13 C 0.166 3.834 14 C -0.138 4.138 15 C 0.148 3.852 16 N -0.593 5.593 17 C -0.249 4.249 18 H 0.065 0.935 19 C 0.000 4.000 20 N -0.904 5.904 21 Si 0.902 3.098 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.175 3.825 26 C -0.145 4.145 27 H 0.058 0.942 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.118 0.882 32 H 0.396 0.604 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.021 0.979 37 H 0.054 0.946 38 H 0.253 0.747 39 H 0.020 0.980 40 H 0.091 0.909 41 H 0.053 0.947 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.911 -14.467 -27.220 30.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.024 3.976 3 N -0.238 5.238 4 N -0.165 5.165 5 H 0.332 0.668 6 N 0.106 4.894 7 N -0.163 5.163 8 C 0.196 3.804 9 N -0.381 5.381 10 C 0.366 3.634 11 O -0.455 6.455 12 N -0.362 5.362 13 C 0.062 3.938 14 C -0.179 4.179 15 C 0.021 3.979 16 N -0.316 5.316 17 C -0.378 4.378 18 H 0.083 0.917 19 C -0.198 4.198 20 N -0.549 5.549 21 Si 0.731 3.269 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.049 3.951 26 C -0.185 4.185 27 H 0.077 0.923 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.136 0.864 32 H 0.229 0.771 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.038 0.962 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.039 0.961 40 H 0.109 0.891 41 H 0.072 0.928 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.611 -13.217 -26.961 30.140 hybrid contribution -0.192 -1.304 0.360 1.366 sum -2.803 -14.521 -26.601 30.436 Atomic orbital electron populations 1.22276 0.93702 1.03812 1.03717 1.22001 0.95670 0.74350 1.05584 1.49037 1.63552 1.12830 0.98360 1.48496 1.55574 1.06968 1.05465 0.66758 1.78110 1.02416 0.99276 1.09556 1.77422 1.23002 1.19081 0.96839 1.21341 0.87710 0.82457 0.88889 1.68683 1.38565 1.36825 0.94025 1.16738 0.79172 0.84129 0.83312 1.91027 1.48179 1.23920 1.82350 1.45210 1.69055 1.17827 1.04092 1.20916 0.95512 0.91626 0.85773 1.22376 0.95648 1.00894 0.98962 1.20878 0.94132 0.94524 0.88336 1.44095 1.01134 1.83916 1.02469 1.19187 1.01715 1.34792 0.82149 0.91739 1.25045 0.99056 0.97742 0.97971 1.70035 1.19213 1.35163 1.30446 0.86311 0.77161 0.78677 0.84713 1.21470 1.21634 1.20556 1.20730 0.85490 0.93278 0.95620 1.22532 0.97542 1.02293 0.96154 0.92261 0.89636 0.90563 0.88709 0.86424 0.77108 0.90192 0.92515 0.92751 0.96151 0.92707 0.93699 0.96146 0.89128 0.92813 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.61 10.24 37.16 0.38 -0.23 16 2 C 0.14 0.50 7.26 -4.04 -0.03 0.47 16 3 N -0.42 -3.15 3.75 -61.90 -0.23 -3.38 16 4 N -0.31 -1.62 8.33 60.35 0.50 -1.11 16 5 H 0.48 -0.20 8.96 -331.76 -2.97 -3.18 16 6 N 0.10 1.03 13.33 60.35 0.80 1.83 16 7 N -0.27 -4.06 10.46 30.05 0.31 -3.75 16 8 C 0.56 7.61 8.57 -320.65 -2.75 4.87 16 9 N -0.62 -9.74 10.54 -17.34 -0.18 -9.92 16 10 C 0.67 12.90 8.44 -87.56 -0.74 12.17 16 11 O -0.58 -13.21 14.59 5.10 0.07 -13.13 16 12 N -0.71 -12.72 5.08 -58.78 -0.30 -13.02 16 13 C 0.17 3.34 2.42 -67.88 -0.16 3.18 16 14 C -0.14 -2.87 5.65 -26.61 -0.15 -3.02 16 15 C 0.15 3.46 6.52 -3.71 -0.02 3.44 16 16 N -0.59 -15.71 2.99 -172.32 -0.52 -16.22 16 17 C -0.25 -7.08 9.58 -15.06 -0.14 -7.23 16 18 H 0.06 1.80 7.89 -52.49 -0.41 1.39 16 19 C 0.00 0.00 4.92 -17.43 -0.09 -0.08 16 20 N -0.90 -26.96 11.19 55.49 0.62 -26.34 16 21 Si 0.90 22.20 29.59 -169.99 -5.03 17.17 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.18 4.38 5.30 -3.71 -0.02 4.36 16 26 C -0.15 -2.94 5.55 -26.61 -0.15 -3.09 16 27 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 28 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 -0.02 8.14 -51.93 -0.42 -0.45 16 31 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.40 6.14 8.70 -40.82 -0.36 5.78 16 33 H 0.08 1.80 7.57 -51.93 -0.39 1.41 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.05 1.24 7.93 -51.93 -0.41 0.83 16 38 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 2.47 6.06 -51.92 -0.31 2.16 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 350.61 15.07 5.28 5.28 Total: -1.00 -38.94 350.61 -11.18 -50.12 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -8.65 Total: -2.35 kcal Atomic # 6 Polarization: 18.69 SS G_CDS: -3.87 Total: 14.82 kcal Atomic # 7 Polarization: -72.93 SS G_CDS: 1.01 Total: -71.91 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.07 Total: -13.13 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -38.94 -11.18 -50.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001310735871.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.346 kcal (2) G-P(sol) polarization free energy of solvation -38.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds