Wall clock time and date at job start Fri Apr 10 2020 18:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46494 * 109.46812 * 2 1 4 4 N 1.40518 * 127.42340 * 264.97614 * 3 2 1 5 5 H 0.97003 * 126.16701 * 0.02562 * 4 3 2 6 6 N 1.28705 * 107.67365 * 180.27976 * 4 3 2 7 7 N 1.28410 * 111.08468 * 359.58933 * 6 4 3 8 8 C 1.35135 * 109.87524 * 0.41802 * 7 6 4 9 9 N 1.32514 * 126.89478 * 179.77229 * 8 7 6 10 10 C 1.34067 * 120.00115 * 359.97438 * 9 8 7 11 11 O 1.21798 * 119.99908 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99996 * 179.97438 * 10 9 8 13 13 C 1.46505 * 119.99569 * 180.02562 * 12 10 9 14 14 C 1.53038 * 109.46128 * 275.02612 * 13 12 10 15 15 C 1.53190 * 109.31417 * 178.60384 * 14 13 12 16 16 N 1.46929 * 108.76706 * 54.65443 * 15 14 13 17 17 C 1.36933 * 120.62826 * 126.36107 * 16 15 14 18 18 H 1.08001 * 120.00247 * 331.86763 * 17 16 15 19 19 C 1.38814 * 119.99907 * 151.86625 * 17 16 15 20 20 N 1.31616 * 119.99826 * 343.06988 * 19 17 16 21 21 Si 1.86798 * 120.00002 * 163.06657 * 19 17 16 22 22 H 1.48501 * 109.47106 * 89.99858 * 21 19 17 23 23 H 1.48499 * 109.47275 * 209.99841 * 21 19 17 24 24 H 1.48498 * 109.47350 * 330.00056 * 21 19 17 25 25 C 1.46921 * 118.73710 * 306.39106 * 16 15 14 26 26 C 1.53046 * 109.45583 * 154.97828 * 13 12 10 27 27 H 1.08993 * 109.47488 * 60.00148 * 1 2 3 28 28 H 1.09005 * 109.46927 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47095 * 299.99445 * 1 2 3 30 30 H 1.09001 * 109.46756 * 240.00149 * 2 1 3 31 31 H 1.08995 * 109.47153 * 120.00266 * 2 1 3 32 32 H 0.96996 * 120.00745 * 0.02562 * 12 10 9 33 33 H 1.08993 * 109.46204 * 35.00608 * 13 12 10 34 34 H 1.08993 * 109.50168 * 298.56760 * 14 13 12 35 35 H 1.09003 * 109.49828 * 58.66875 * 14 13 12 36 36 H 1.09006 * 109.59770 * 294.87396 * 15 14 13 37 37 H 1.08994 * 109.70869 * 174.51161 * 15 14 13 38 38 H 0.97004 * 119.99519 * 180.02562 * 20 19 17 39 39 H 1.09001 * 109.59060 * 293.81335 * 25 16 15 40 40 H 1.09010 * 109.70014 * 173.45996 * 25 16 15 41 41 H 1.09004 * 109.49368 * 301.32948 * 26 13 12 42 42 H 1.09000 * 109.50047 * 61.40025 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3951 2.1537 -1.1117 5 1 2.3802 1.8683 -2.0386 6 7 2.7685 3.3065 -0.6779 7 7 2.6681 3.3738 0.6005 8 6 2.2074 2.2004 1.0875 9 7 1.9826 1.9000 2.3584 10 6 2.2165 2.8107 3.3141 11 8 2.6352 3.9144 3.0141 12 7 1.9875 2.5052 4.6066 13 6 2.2426 3.5007 5.6508 14 6 3.7185 3.4516 6.0524 15 6 3.9891 4.5172 7.1191 16 7 3.0535 4.3178 8.2344 17 6 3.5147 4.1899 9.5174 18 1 4.5001 3.7871 9.6995 19 6 2.7155 4.5779 10.5841 20 7 1.6781 5.3613 10.3783 21 14 3.1124 3.9880 12.3115 22 1 4.0277 4.9563 12.9671 23 1 1.8578 3.8818 13.0988 24 1 3.7672 2.6571 12.2419 25 6 1.6140 4.2576 7.9467 26 6 1.3702 3.1950 6.8705 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6537 1.6264 4.8456 33 1 2.0021 4.4940 5.2721 34 1 3.9536 2.4662 6.4545 35 1 4.3401 3.6461 5.1783 36 1 3.8413 5.5087 6.6912 37 1 5.0133 4.4241 7.4802 38 1 1.1199 5.6327 11.1237 39 1 1.2725 5.2280 7.5863 40 1 1.0691 3.9919 8.8527 41 1 0.3200 3.2071 6.5788 42 1 1.6272 2.2118 7.2645 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001310735871.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:56 Heat of formation + Delta-G solvation = 132.450512 kcal Electronic energy + Delta-G solvation = -25526.936324 eV Core-core repulsion = 21774.575337 eV Total energy + Delta-G solvation = -3752.360987 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.165 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.29650 -40.85752 -39.05652 -37.03853 -36.21252 -35.36306 -33.87195 -33.09340 -31.85011 -31.53166 -30.82831 -27.02330 -26.12608 -25.20059 -24.19016 -23.82788 -23.01842 -21.35939 -21.03933 -20.09263 -18.90574 -18.34953 -18.00050 -17.68308 -16.99632 -16.74800 -15.97265 -15.91831 -15.41118 -15.33222 -15.18968 -14.74229 -14.58717 -14.33220 -14.19704 -14.02663 -13.20372 -13.17218 -12.98882 -12.82313 -12.70991 -12.58033 -12.48582 -12.27612 -12.13743 -11.99552 -11.90307 -11.89004 -11.83507 -11.50208 -11.28341 -10.53613 -10.32951 -9.94852 -9.27463 -8.69049 -7.85386 -5.31357 -0.69839 -0.33116 0.97940 1.50111 1.50965 1.61864 1.98768 2.52317 2.54326 2.86040 3.17067 3.30260 3.32248 3.66692 3.80530 3.93857 4.00478 4.10246 4.18482 4.35733 4.37731 4.48175 4.66899 4.76399 4.85045 4.87190 4.91440 4.99268 5.08783 5.17231 5.18213 5.26745 5.31973 5.48365 5.66205 5.71803 5.74537 5.82787 6.25589 6.40995 6.80631 6.99871 7.16069 7.85162 7.88240 8.39881 9.22252 Molecular weight = 309.17amu Principal moments of inertia in cm(-1) A = 0.034429 B = 0.002613 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.073366 B =10711.121314 C =11079.542725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.131 3.869 3 N -0.393 5.393 4 N -0.252 5.252 5 H 0.503 0.497 6 N 0.104 4.896 7 N -0.344 5.344 8 C 0.552 3.448 9 N -0.638 5.638 10 C 0.666 3.334 11 O -0.629 6.629 12 N -0.703 5.703 13 C 0.179 3.821 14 C -0.121 4.121 15 C 0.147 3.853 16 N -0.609 5.609 17 C -0.265 4.265 18 H 0.068 0.932 19 C -0.051 4.051 20 N -0.937 5.937 21 Si 0.972 3.028 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.269 1.269 25 C 0.181 3.819 26 C -0.126 4.126 27 H 0.068 0.932 28 H 0.110 0.890 29 H 0.041 0.959 30 H 0.149 0.851 31 H 0.116 0.884 32 H 0.409 0.591 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.006 0.994 37 H 0.059 0.941 38 H 0.251 0.749 39 H -0.007 1.007 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.889 -17.671 -29.723 34.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.014 3.986 3 N -0.207 5.207 4 N -0.109 5.109 5 H 0.367 0.633 6 N 0.107 4.893 7 N -0.234 5.234 8 C 0.186 3.814 9 N -0.405 5.405 10 C 0.364 3.636 11 O -0.508 6.508 12 N -0.356 5.356 13 C 0.073 3.927 14 C -0.162 4.162 15 C 0.021 3.979 16 N -0.332 5.332 17 C -0.395 4.395 18 H 0.086 0.914 19 C -0.246 4.246 20 N -0.583 5.583 21 Si 0.800 3.200 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.193 1.193 25 C 0.055 3.945 26 C -0.166 4.166 27 H 0.087 0.913 28 H 0.129 0.871 29 H 0.061 0.939 30 H 0.167 0.833 31 H 0.134 0.866 32 H 0.244 0.756 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.024 0.976 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.012 0.988 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.589 -16.492 -29.615 33.996 hybrid contribution -0.216 -0.404 0.726 0.858 sum -2.805 -16.896 -28.889 33.585 Atomic orbital electron populations 1.22260 0.93332 1.05055 1.02477 1.22609 0.95892 0.71916 1.08198 1.49574 1.60418 1.13337 0.97408 1.48780 1.50299 1.05487 1.06333 0.63272 1.78052 1.02382 1.00554 1.08335 1.77438 1.26748 1.20804 0.98417 1.21537 0.87202 0.83072 0.89562 1.68644 1.42063 1.35411 0.94391 1.17083 0.78510 0.84004 0.84026 1.90984 1.50832 1.26004 1.82948 1.44857 1.69414 1.17781 1.03514 1.20521 0.94936 0.91061 0.86162 1.22162 0.96152 1.00112 0.97754 1.20939 0.93902 0.94770 0.88284 1.44347 1.01958 1.84189 1.02730 1.19533 1.02049 1.34670 0.83227 0.91445 1.25864 0.99058 0.97854 1.01865 1.70201 1.20273 1.36348 1.31433 0.85210 0.76784 0.78425 0.79593 1.21259 1.21647 1.19341 1.20546 0.84692 0.93417 0.95832 1.22256 0.98857 1.00860 0.94602 0.91332 0.87142 0.93936 0.83334 0.86614 0.75564 0.93108 0.91628 0.92958 0.97621 0.92227 0.93977 0.98846 0.91560 0.90763 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.62 10.24 71.98 0.74 0.12 16 2 C 0.13 0.36 7.26 86.38 0.63 0.99 16 3 N -0.39 -4.69 3.75 -349.75 -1.31 -6.00 16 4 N -0.25 -1.66 8.33 37.02 0.31 -1.35 16 5 H 0.50 -3.07 8.96 -340.22 -3.05 -6.12 16 6 N 0.10 1.89 13.33 37.02 0.49 2.38 16 7 N -0.34 -10.37 10.46 -58.83 -0.62 -10.99 16 8 C 0.55 14.61 8.57 260.73 2.24 16.85 16 9 N -0.64 -20.21 10.54 -327.35 -3.45 -23.66 16 10 C 0.67 26.40 8.44 179.28 1.51 27.91 16 11 O -0.63 -30.02 14.59 -4.66 -0.07 -30.09 16 12 N -0.70 -25.44 5.08 -458.05 -2.33 -27.76 16 13 C 0.18 7.37 2.42 45.02 0.11 7.48 16 14 C -0.12 -5.12 5.65 30.67 0.17 -4.95 16 15 C 0.15 7.08 6.52 86.36 0.56 7.64 16 16 N -0.61 -33.05 2.99 -699.09 -2.09 -35.15 16 17 C -0.26 -15.27 9.58 84.03 0.81 -14.47 16 18 H 0.07 3.77 7.89 -2.91 -0.02 3.75 16 19 C -0.05 -2.96 4.92 84.86 0.42 -2.54 16 20 N -0.94 -57.29 11.19 21.65 0.24 -57.05 16 21 Si 0.97 46.02 29.59 68.60 2.03 48.05 16 22 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 25 C 0.18 9.38 5.30 86.36 0.46 9.84 16 26 C -0.13 -5.14 5.55 30.67 0.17 -4.97 16 27 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 28 H 0.11 -0.08 8.14 -2.38 -0.02 -0.10 16 29 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.15 -1.06 8.14 -2.39 -0.02 -1.08 16 31 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.41 12.45 8.70 -92.71 -0.81 11.65 16 33 H 0.05 2.41 7.57 -2.39 -0.02 2.39 16 34 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 37 H 0.06 2.75 7.93 -2.39 -0.02 2.73 16 38 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 39 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 40 H 0.07 3.74 6.06 -2.38 -0.01 3.73 16 41 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 42 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -90.70 350.61 -1.78 -92.48 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -2.79 Total: 5.24 kcal Atomic # 6 Polarization: 36.09 SS G_CDS: 7.81 Total: 43.90 kcal Atomic # 7 Polarization: -150.82 SS G_CDS: -8.75 Total: -159.57 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.07 Total: -30.09 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -90.70 -1.78 -92.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001310735871.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.927 kcal (2) G-P(sol) polarization free energy of solvation -90.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds