Wall clock time and date at job start Fri Apr 10 2020 18:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40447 * 126.82437 * 2 1 4 4 C 1.30718 * 106.79063 * 179.97438 * 3 2 1 5 5 N 1.33241 * 108.94820 * 0.02562 * 4 3 2 6 6 C 1.30834 * 109.82716 * 359.97438 * 5 4 3 7 7 C 1.50694 * 125.95659 * 179.97438 * 6 5 4 8 8 O 1.42910 * 112.94222 * 168.43044 * 7 6 5 9 9 C 1.53950 * 113.74465 * 36.70246 * 7 6 5 10 10 N 1.47576 * 86.11961 * 222.04108 * 9 7 6 11 11 C 1.34773 * 134.49464 * 204.63232 * 10 9 7 12 12 O 1.21591 * 119.99890 * 180.02562 * 11 10 9 13 13 N 1.34776 * 119.99865 * 0.02562 * 11 10 9 14 14 C 1.46498 * 119.99838 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47044 * 179.97438 * 14 13 11 16 16 C 1.53003 * 109.47047 * 180.02562 * 15 14 13 17 17 C 1.50704 * 109.47064 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99811 * 359.97438 * 17 16 15 19 19 C 1.37873 * 119.99999 * 179.97438 * 17 16 15 20 20 N 1.31519 * 120.00021 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00062 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46883 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46867 * 120.00135 * 21 19 17 24 24 H 1.48498 * 109.47484 * 240.00105 * 21 19 17 25 25 C 1.47582 * 91.01346 * 24.64138 * 10 9 7 26 26 H 1.09000 * 109.47090 * 269.99837 * 1 2 3 27 27 H 1.09001 * 109.46754 * 29.99749 * 1 2 3 28 28 H 1.08993 * 109.47230 * 149.99590 * 1 2 3 29 29 H 1.08002 * 125.52295 * 179.97438 * 4 3 2 30 30 H 0.96692 * 113.99981 * 309.66803 * 8 7 6 31 31 H 1.09003 * 113.76732 * 336.34676 * 9 7 6 32 32 H 1.09008 * 113.76873 * 107.73994 * 9 7 6 33 33 H 0.97002 * 120.00114 * 359.97438 * 13 11 10 34 34 H 1.08993 * 109.47768 * 299.99980 * 14 13 11 35 35 H 1.09007 * 109.47016 * 59.99909 * 14 13 11 36 36 H 1.08992 * 109.47422 * 300.00284 * 15 14 13 37 37 H 1.08996 * 109.46900 * 60.00774 * 15 14 13 38 38 H 1.09002 * 109.47043 * 300.00106 * 16 15 14 39 39 H 1.09001 * 109.47260 * 60.00640 * 16 15 14 40 40 H 0.96997 * 120.00032 * 180.02562 * 20 19 17 41 41 H 1.09003 * 113.76890 * 221.06110 * 25 10 9 42 42 H 1.08997 * 113.77564 * 89.65664 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1242 0.0000 4 6 3.5348 0.6764 0.0006 5 7 3.5096 -0.6557 0.0003 6 6 2.2706 -1.0761 0.0002 7 6 1.8246 -2.5155 -0.0006 8 8 0.4282 -2.6662 0.2634 9 6 2.7204 -3.4425 0.8410 10 7 2.5917 -4.4078 -0.2679 11 6 2.6885 -5.7482 -0.3694 12 8 2.5295 -6.2894 -1.4465 13 7 2.9615 -6.4887 0.7231 14 6 3.0661 -7.9458 0.6129 15 6 3.3811 -8.5399 1.9872 16 6 3.4910 -10.0616 1.8720 17 6 3.8006 -10.6469 3.2258 18 1 3.9086 -9.9983 4.0826 19 6 3.9459 -12.0102 3.3706 20 7 3.8149 -12.8000 2.3271 21 14 4.3304 -12.7356 5.0485 22 1 4.4275 -11.6430 6.0496 23 1 3.2477 -13.6726 5.4425 24 1 5.6208 -13.4679 4.9875 25 6 2.3146 -3.3157 -1.2211 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8899 -0.5139 29 1 4.4255 1.2873 0.0003 30 1 0.1223 -2.1887 1.0465 31 1 3.7339 -3.0661 0.9805 32 1 2.2576 -3.7761 1.7698 33 1 3.0886 -6.0570 1.5824 34 1 2.1222 -8.3515 0.2490 35 1 3.8641 -8.2011 -0.0844 36 1 4.3251 -8.1343 2.3507 37 1 2.5833 -8.2848 2.6848 38 1 2.5470 -10.4676 1.5083 39 1 4.2890 -10.3165 1.1746 40 1 3.9168 -13.7592 2.4290 41 1 1.5278 -3.5480 -1.9387 42 1 3.2088 -2.9020 -1.6874 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001311913465.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:01 Heat of formation + Delta-G solvation = 54.961509 kcal Electronic energy + Delta-G solvation = -24805.093425 eV Core-core repulsion = 21017.079511 eV Total energy + Delta-G solvation = -3788.013914 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.81290 -40.69135 -38.70024 -36.22166 -35.27755 -34.28798 -33.27969 -32.16302 -31.20760 -29.13875 -27.79035 -26.88527 -26.26920 -23.85790 -22.70568 -22.48460 -20.93023 -20.58556 -19.62729 -18.36058 -17.91685 -17.03303 -16.58003 -16.40691 -16.07695 -15.85277 -15.22307 -14.97453 -14.75808 -14.49210 -14.35751 -13.94940 -13.84128 -13.53964 -13.43492 -13.20600 -12.81787 -12.50624 -12.28236 -11.81240 -11.71564 -11.69627 -11.12282 -10.91460 -10.71054 -10.56560 -10.55699 -10.28805 -10.10296 -9.99716 -9.85098 -9.43831 -9.10152 -9.06037 -8.56285 -8.36426 -6.00842 -4.03801 0.95391 1.68157 2.30426 2.37132 2.94776 3.20154 3.30519 3.37956 3.41338 3.46269 3.75850 3.85905 4.02807 4.20756 4.45182 4.49394 4.55500 4.87713 4.90981 4.93990 5.07488 5.16722 5.34954 5.35163 5.38951 5.68011 5.75506 5.82995 5.89593 6.11469 6.20046 6.53810 6.63731 6.65042 6.85245 7.03044 7.15650 7.53120 7.65428 7.78151 7.98275 8.07112 8.39128 8.71673 9.03110 9.60287 11.10487 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.028616 B = 0.002145 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.229049 B =13048.816576 C =13343.589998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.370 5.370 3 N -0.317 5.317 4 C 0.204 3.796 5 N -0.526 5.526 6 C 0.255 3.745 7 C 0.168 3.832 8 O -0.516 6.516 9 C 0.098 3.902 10 N -0.659 5.659 11 C 0.732 3.268 12 O -0.585 6.585 13 N -0.736 5.736 14 C 0.135 3.865 15 C -0.120 4.120 16 C 0.023 3.977 17 C -0.521 4.521 18 H 0.056 0.944 19 C 0.056 3.944 20 N -0.893 5.893 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.161 3.839 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.113 0.887 29 H 0.222 0.778 30 H 0.384 0.616 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.393 0.607 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.260 0.740 41 H 0.097 0.903 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.232 30.011 -3.334 30.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.160 5.160 3 N -0.144 5.144 4 C -0.099 4.099 5 N -0.254 5.254 6 C -0.023 4.023 7 C 0.122 3.878 8 O -0.322 6.322 9 C -0.026 4.026 10 N -0.400 5.400 11 C 0.435 3.565 12 O -0.463 6.463 13 N -0.390 5.390 14 C 0.012 3.988 15 C -0.158 4.158 16 C -0.014 4.014 17 C -0.559 4.559 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.532 5.532 21 Si 0.721 3.279 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C 0.036 3.964 26 H 0.101 0.899 27 H 0.113 0.887 28 H 0.131 0.869 29 H 0.238 0.762 30 H 0.233 0.767 31 H 0.127 0.873 32 H 0.110 0.890 33 H 0.226 0.774 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.070 0.930 41 H 0.115 0.885 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.322 29.334 -4.739 30.380 hybrid contribution 0.110 0.162 1.894 1.904 sum -6.212 29.497 -2.845 30.278 Atomic orbital electron populations 1.22371 0.73259 1.06470 1.04313 1.50310 1.08274 1.03614 1.53817 1.78113 1.02237 1.08015 1.26061 1.26058 0.95889 0.90044 0.97912 1.70405 1.18828 1.11772 1.24411 1.24560 0.87072 0.92109 0.98544 1.21172 0.82880 0.83228 1.00505 1.86708 1.20026 1.74956 1.50498 1.23781 1.00545 0.85834 0.92485 1.48668 1.76866 1.02893 1.11551 1.15330 0.77729 0.78712 0.84736 1.90939 1.58265 1.69897 1.27152 1.45317 1.75884 1.08390 1.09393 1.21553 1.01720 0.75730 0.99799 1.21889 1.00406 1.00273 0.93213 1.19039 0.97648 0.87323 0.97420 1.21236 1.48257 0.91908 0.94517 0.92613 1.25038 0.95468 0.97363 0.96680 1.69977 1.50029 1.03995 1.29243 0.86526 0.77938 0.79136 0.84318 1.19787 1.21024 1.21006 1.22983 1.00396 0.81468 0.91518 0.89918 0.88704 0.86912 0.76183 0.76666 0.87301 0.89006 0.77383 0.91851 0.91829 0.92742 0.92785 0.96208 0.96192 0.92986 0.88470 0.87634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.25 9.93 59.84 0.59 0.84 16 2 N -0.37 -2.63 4.04 -65.11 -0.26 -2.89 16 3 N -0.32 -2.79 12.70 29.29 0.37 -2.41 16 4 C 0.20 1.60 13.03 -91.81 -1.20 0.40 16 5 N -0.53 -4.71 10.77 -11.97 -0.13 -4.84 16 6 C 0.26 1.98 6.98 -155.70 -1.09 0.89 16 7 C 0.17 1.23 1.86 -90.85 -0.17 1.06 16 8 O -0.52 -3.10 11.19 -35.23 -0.39 -3.49 16 9 C 0.10 0.79 7.82 -2.98 -0.02 0.77 16 10 N -0.66 -7.85 3.61 -184.05 -0.66 -8.52 16 11 C 0.73 11.93 8.76 -86.92 -0.76 11.17 16 12 O -0.59 -12.06 17.07 5.29 0.09 -11.97 16 13 N -0.74 -11.22 5.56 -65.23 -0.36 -11.58 16 14 C 0.13 2.45 5.67 -4.04 -0.02 2.43 16 15 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 16 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 17 C -0.52 -14.55 9.11 -34.44 -0.31 -14.87 16 18 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 20 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 21 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 22 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 C 0.16 1.56 8.23 -2.97 -0.02 1.53 16 26 H 0.08 0.10 8.01 -51.93 -0.42 -0.32 16 27 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.11 0.29 6.17 -51.93 -0.32 -0.03 16 29 H 0.22 0.94 8.06 -52.49 -0.42 0.51 16 30 H 0.38 0.82 7.63 45.56 0.35 1.17 16 31 H 0.11 0.85 7.76 -51.93 -0.40 0.45 16 32 H 0.09 0.60 8.14 -51.92 -0.42 0.17 16 33 H 0.39 4.89 8.08 -40.82 -0.33 4.56 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.06 1.23 8.14 -51.92 -0.42 0.80 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.11 0.95 8.09 -51.93 -0.42 0.53 16 LS Contribution 359.29 15.07 5.41 5.41 Total: -1.00 -37.53 359.29 -8.91 -46.44 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -5.31 Total: -0.16 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -3.38 Total: 3.68 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: -0.31 Total: -56.38 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.30 Total: -15.47 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -37.53 -8.91 -46.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001311913465.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.402 kcal (2) G-P(sol) polarization free energy of solvation -37.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds