Wall clock time and date at job start Fri Apr 10 2020 18:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40447 * 126.82437 * 2 1 4 4 C 1.30718 * 106.79063 * 179.97438 * 3 2 1 5 5 N 1.33241 * 108.94820 * 0.02562 * 4 3 2 6 6 C 1.30834 * 109.82716 * 359.97438 * 5 4 3 7 7 C 1.50694 * 125.95659 * 179.97438 * 6 5 4 8 8 O 1.42910 * 112.94222 * 168.43044 * 7 6 5 9 9 C 1.53950 * 113.74465 * 36.70246 * 7 6 5 10 10 N 1.47576 * 86.11961 * 222.04108 * 9 7 6 11 11 C 1.34773 * 134.49464 * 204.63232 * 10 9 7 12 12 O 1.21591 * 119.99890 * 180.02562 * 11 10 9 13 13 N 1.34776 * 119.99865 * 0.02562 * 11 10 9 14 14 C 1.46498 * 119.99838 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47044 * 179.97438 * 14 13 11 16 16 C 1.53003 * 109.47047 * 180.02562 * 15 14 13 17 17 C 1.50704 * 109.47064 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99811 * 359.97438 * 17 16 15 19 19 C 1.37873 * 119.99999 * 179.97438 * 17 16 15 20 20 N 1.31519 * 120.00021 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00062 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46883 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46867 * 120.00135 * 21 19 17 24 24 H 1.48498 * 109.47484 * 240.00105 * 21 19 17 25 25 C 1.47582 * 91.01346 * 24.64138 * 10 9 7 26 26 H 1.09000 * 109.47090 * 269.99837 * 1 2 3 27 27 H 1.09001 * 109.46754 * 29.99749 * 1 2 3 28 28 H 1.08993 * 109.47230 * 149.99590 * 1 2 3 29 29 H 1.08002 * 125.52295 * 179.97438 * 4 3 2 30 30 H 0.96692 * 113.99981 * 309.66803 * 8 7 6 31 31 H 1.09003 * 113.76732 * 336.34676 * 9 7 6 32 32 H 1.09008 * 113.76873 * 107.73994 * 9 7 6 33 33 H 0.97002 * 120.00114 * 359.97438 * 13 11 10 34 34 H 1.08993 * 109.47768 * 299.99980 * 14 13 11 35 35 H 1.09007 * 109.47016 * 59.99909 * 14 13 11 36 36 H 1.08992 * 109.47422 * 300.00284 * 15 14 13 37 37 H 1.08996 * 109.46900 * 60.00774 * 15 14 13 38 38 H 1.09002 * 109.47043 * 300.00106 * 16 15 14 39 39 H 1.09001 * 109.47260 * 60.00640 * 16 15 14 40 40 H 0.96997 * 120.00032 * 180.02562 * 20 19 17 41 41 H 1.09003 * 113.76890 * 221.06110 * 25 10 9 42 42 H 1.08997 * 113.77564 * 89.65664 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1242 0.0000 4 6 3.5348 0.6764 0.0006 5 7 3.5096 -0.6557 0.0003 6 6 2.2706 -1.0761 0.0002 7 6 1.8246 -2.5155 -0.0006 8 8 0.4282 -2.6662 0.2634 9 6 2.7204 -3.4425 0.8410 10 7 2.5917 -4.4078 -0.2679 11 6 2.6885 -5.7482 -0.3694 12 8 2.5295 -6.2894 -1.4465 13 7 2.9615 -6.4887 0.7231 14 6 3.0661 -7.9458 0.6129 15 6 3.3811 -8.5399 1.9872 16 6 3.4910 -10.0616 1.8720 17 6 3.8006 -10.6469 3.2258 18 1 3.9086 -9.9983 4.0826 19 6 3.9459 -12.0102 3.3706 20 7 3.8149 -12.8000 2.3271 21 14 4.3304 -12.7356 5.0485 22 1 4.4275 -11.6430 6.0496 23 1 3.2477 -13.6726 5.4425 24 1 5.6208 -13.4679 4.9875 25 6 2.3146 -3.3157 -1.2211 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8899 -0.5139 29 1 4.4255 1.2873 0.0003 30 1 0.1223 -2.1887 1.0465 31 1 3.7339 -3.0661 0.9805 32 1 2.2576 -3.7761 1.7698 33 1 3.0886 -6.0570 1.5824 34 1 2.1222 -8.3515 0.2490 35 1 3.8641 -8.2011 -0.0844 36 1 4.3251 -8.1343 2.3507 37 1 2.5833 -8.2848 2.6848 38 1 2.5470 -10.4676 1.5083 39 1 4.2890 -10.3165 1.1746 40 1 3.9168 -13.7592 2.4290 41 1 1.5278 -3.5480 -1.9387 42 1 3.2088 -2.9020 -1.6874 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001311913465.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:00 Heat of formation + Delta-G solvation = 26.436122 kcal Electronic energy + Delta-G solvation = -24806.330379 eV Core-core repulsion = 21017.079511 eV Total energy + Delta-G solvation = -3789.250867 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.37780 -41.59033 -39.77404 -37.05435 -36.69587 -35.17040 -34.76897 -33.18138 -32.60431 -30.15470 -28.51325 -27.89531 -27.45441 -25.11308 -23.99841 -23.05812 -22.28880 -21.58523 -20.72192 -19.17471 -18.72815 -18.46916 -17.71058 -17.15120 -17.05258 -16.95004 -16.46852 -16.14221 -15.80357 -15.58265 -15.39176 -14.90506 -14.69812 -14.40789 -14.25679 -14.06570 -13.77775 -13.70572 -13.48749 -13.37293 -13.09164 -12.76653 -12.53442 -12.39495 -12.31380 -11.79919 -11.66466 -11.54924 -11.26943 -11.15524 -11.09493 -10.81760 -10.56051 -10.54451 -10.31724 -9.66804 -8.17816 -6.29116 0.39508 1.15567 1.37817 1.43229 1.43392 1.56593 1.78810 2.06641 2.41722 2.43049 2.68730 2.96192 3.16024 3.18770 3.42774 3.69887 4.02594 4.14316 4.24293 4.26481 4.35012 4.37686 4.42567 4.48621 4.56155 4.60278 4.66474 4.76136 4.97187 5.00548 5.18216 5.18784 5.38656 5.46131 5.55268 5.64496 5.73030 5.86233 6.07756 6.24258 6.34559 6.87762 6.92789 6.98044 7.40307 7.49348 8.94563 Molecular weight = 309.16amu Principal moments of inertia in cm(-1) A = 0.028616 B = 0.002145 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.229049 B =13048.816576 C =13343.589998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.367 5.367 3 N -0.341 5.341 4 C 0.198 3.802 5 N -0.548 5.548 6 C 0.253 3.747 7 C 0.192 3.808 8 O -0.520 6.520 9 C 0.100 3.900 10 N -0.659 5.659 11 C 0.727 3.273 12 O -0.637 6.637 13 N -0.725 5.725 14 C 0.150 3.850 15 C -0.099 4.099 16 C 0.023 3.977 17 C -0.538 4.538 18 H 0.067 0.933 19 C -0.005 4.005 20 N -0.936 5.936 21 Si 0.968 3.032 22 H -0.258 1.258 23 H -0.280 1.280 24 H -0.281 1.281 25 C 0.151 3.849 26 H 0.108 0.892 27 H 0.098 0.902 28 H 0.120 0.880 29 H 0.247 0.753 30 H 0.403 0.597 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.410 0.590 34 H 0.048 0.952 35 H 0.047 0.953 36 H 0.068 0.932 37 H 0.069 0.931 38 H -0.007 1.007 39 H -0.008 1.008 40 H 0.263 0.737 41 H 0.090 0.910 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.549 31.968 -1.073 32.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.158 5.158 3 N -0.169 5.169 4 C -0.104 4.104 5 N -0.277 5.277 6 C -0.025 4.025 7 C 0.146 3.854 8 O -0.329 6.329 9 C -0.023 4.023 10 N -0.399 5.399 11 C 0.430 3.570 12 O -0.519 6.519 13 N -0.380 5.380 14 C 0.025 3.975 15 C -0.137 4.137 16 C -0.015 4.015 17 C -0.576 4.576 18 H 0.085 0.915 19 C -0.203 4.203 20 N -0.576 5.576 21 Si 0.793 3.207 22 H -0.181 1.181 23 H -0.206 1.206 24 H -0.207 1.207 25 C 0.027 3.973 26 H 0.126 0.874 27 H 0.116 0.884 28 H 0.138 0.862 29 H 0.263 0.737 30 H 0.256 0.744 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.246 0.754 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.011 0.989 39 H 0.011 0.989 40 H 0.071 0.929 41 H 0.109 0.891 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.665 31.383 -2.422 32.175 hybrid contribution 0.152 -0.350 1.139 1.201 sum -6.513 31.033 -1.283 31.735 Atomic orbital electron populations 1.22683 0.71252 1.07024 1.06161 1.50535 1.09388 1.02970 1.52877 1.78073 1.02852 1.09052 1.26911 1.26624 0.96584 0.89995 0.97203 1.70386 1.19649 1.12464 1.25155 1.24438 0.87107 0.92166 0.98754 1.20640 0.83443 0.82731 0.98578 1.86692 1.18941 1.75400 1.51847 1.24028 1.01447 0.84444 0.92398 1.48654 1.75319 1.01911 1.13969 1.15464 0.77526 0.80059 0.83951 1.90898 1.60475 1.71507 1.29003 1.44947 1.75794 1.07050 1.10187 1.21121 1.00312 0.77609 0.98426 1.21581 1.01706 0.96125 0.94281 1.18954 0.95153 0.91394 0.95997 1.21701 1.47778 0.92510 0.95587 0.91452 1.26042 0.95267 0.98038 1.00944 1.70124 1.51233 1.04387 1.31852 0.85351 0.77625 0.78465 0.79293 1.18122 1.20621 1.20670 1.23174 1.00736 0.81098 0.92337 0.87396 0.88378 0.86161 0.73715 0.74419 0.86684 0.86744 0.75403 0.93384 0.93463 0.91345 0.91241 0.98872 0.98932 0.92850 0.89136 0.87200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.27 9.93 127.77 1.27 1.54 16 2 N -0.37 -4.48 4.04 -359.90 -1.45 -5.93 16 3 N -0.34 -5.46 12.70 -61.24 -0.78 -6.23 16 4 C 0.20 2.81 13.03 180.76 2.36 5.17 16 5 N -0.55 -8.90 10.77 -191.78 -2.06 -10.97 16 6 C 0.25 3.43 6.98 138.22 0.97 4.40 16 7 C 0.19 2.40 1.86 -10.88 -0.02 2.38 16 8 O -0.52 -4.85 11.19 -148.98 -1.67 -6.51 16 9 C 0.10 1.36 7.82 86.48 0.68 2.04 16 10 N -0.66 -14.94 3.61 -858.31 -3.10 -18.04 16 11 C 0.73 23.49 8.76 179.06 1.57 25.05 16 12 O -0.64 -26.94 17.07 -4.00 -0.07 -27.00 16 13 N -0.72 -21.39 5.56 -478.54 -2.66 -24.05 16 14 C 0.15 5.48 5.67 86.38 0.49 5.97 16 15 C -0.10 -3.83 5.27 30.60 0.16 -3.67 16 16 C 0.02 1.19 4.97 29.85 0.15 1.34 16 17 C -0.54 -29.95 9.11 25.60 0.23 -29.71 16 18 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 19 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 20 N -0.94 -57.33 13.29 21.45 0.28 -57.05 16 21 Si 0.97 43.76 29.54 68.60 2.03 45.78 16 22 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 25 C 0.15 2.78 8.23 86.48 0.71 3.49 16 26 H 0.11 -0.10 8.01 -2.39 -0.02 -0.12 16 27 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.12 0.31 6.17 -2.39 -0.01 0.30 16 29 H 0.25 1.68 8.06 -2.91 -0.02 1.65 16 30 H 0.40 0.33 7.63 -74.06 -0.57 -0.24 16 31 H 0.12 1.51 7.76 -2.39 -0.02 1.49 16 32 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.41 9.23 8.08 -92.71 -0.75 8.48 16 34 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 38 H -0.01 -0.41 8.14 -2.39 -0.02 -0.42 16 39 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 40 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 41 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.11 1.93 8.09 -2.39 -0.02 1.91 16 Total: -1.00 -82.56 359.29 -0.71 -83.27 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -0.26 Total: 8.59 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: 9.02 Total: 18.15 kcal Atomic # 7 Polarization: -112.51 SS G_CDS: -9.77 Total: -122.28 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: -1.74 Total: -33.52 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -82.56 -0.71 -83.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001311913465.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.707 kcal (2) G-P(sol) polarization free energy of solvation -82.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds